Wall clock time and date at job start Tue Mar 31 2020 00:59:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46490 * 109.47271 * 2 1 4 4 C 1.46500 * 120.00345 * 269.99983 * 3 2 1 5 5 C 1.50703 * 109.47160 * 270.00581 * 4 3 2 6 6 H 1.08000 * 119.99634 * 359.97438 * 5 4 3 7 7 C 1.37874 * 120.00002 * 179.97438 * 5 4 3 8 8 N 1.31515 * 120.00203 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 120.00042 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47061 * 59.99747 * 9 7 5 11 11 H 1.48499 * 109.47292 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47042 * 300.00067 * 9 7 5 13 13 C 1.38048 * 120.00354 * 90.00032 * 3 2 1 14 14 N 1.28849 * 124.81576 * 179.97438 * 13 3 2 15 15 C 1.34900 * 117.86871 * 179.97438 * 14 13 3 16 16 C 1.41084 * 128.70143 * 180.02562 * 15 14 13 17 17 C 1.37203 * 120.46707 * 179.97438 * 16 15 14 18 18 C 1.38891 * 120.57570 * 0.04003 * 17 16 15 19 19 F 1.35091 * 120.03945 * 180.02562 * 18 17 16 20 20 C 1.37901 * 119.92337 * 359.97438 * 18 17 16 21 21 C 1.39283 * 120.18619 * 359.97438 * 20 18 17 22 22 S 1.75799 * 124.80799 * 0.02562 * 13 3 2 23 23 H 1.09005 * 109.47378 * 300.00025 * 1 2 3 24 24 H 1.08999 * 109.46942 * 59.99760 * 1 2 3 25 25 H 1.08998 * 109.47298 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.46976 * 239.99700 * 2 1 3 27 27 H 1.08999 * 109.46942 * 120.00240 * 2 1 3 28 28 H 1.09007 * 109.46744 * 29.99805 * 4 3 2 29 29 H 1.08989 * 109.47623 * 150.00060 * 4 3 2 30 30 H 0.97004 * 119.99904 * 180.02562 * 8 7 5 31 31 H 1.07996 * 119.76400 * 359.97351 * 16 15 14 32 32 H 1.08003 * 119.70996 * 180.02562 * 17 16 15 33 33 H 1.07992 * 119.90950 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8349 -1.7038 6 1 4.3428 1.2306 -1.0958 7 6 4.1491 2.3895 -2.8779 8 7 3.3489 3.1249 -3.6185 9 14 5.9135 2.0964 -3.4169 10 1 6.1416 0.6397 -3.5937 11 1 6.1607 2.7953 -4.7036 12 1 6.8407 2.6206 -2.3822 13 6 2.2484 2.0319 1.1955 14 7 2.6769 3.2423 1.3036 15 6 2.8525 3.7406 2.5448 16 6 3.3052 5.0215 2.9253 17 6 3.4211 5.3528 4.2517 18 6 3.0958 4.4334 5.2406 19 9 3.2135 4.7713 6.5432 20 6 2.6515 3.1756 4.8911 21 6 2.5275 2.8244 3.5490 22 16 1.9996 1.3263 2.7863 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 1.5817 1.6876 -2.0284 29 1 2.0956 3.1409 -1.1384 30 1 3.6748 3.5148 -4.4448 31 1 3.5623 5.7463 2.1671 32 1 3.7685 6.3371 4.5291 33 1 2.3990 2.4607 5.6602 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603302774.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:59:29 Heat of formation + Delta-G solvation = -3.003729 kcal Electronic energy + Delta-G solvation = -18869.817043 eV Core-core repulsion = 15742.790532 eV Total energy + Delta-G solvation = -3127.026511 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.074 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.85929 -41.05203 -38.98910 -36.61428 -34.87040 -32.15172 -32.00006 -30.14280 -28.62329 -25.63766 -24.94067 -24.34471 -22.84643 -21.25223 -19.55103 -18.66978 -18.41417 -17.97257 -16.90975 -16.66859 -16.61743 -16.23775 -15.96539 -15.52754 -14.86092 -14.72944 -14.60438 -14.38742 -14.06222 -13.76595 -13.42242 -13.25863 -13.10637 -12.72923 -12.61139 -12.55436 -12.22783 -12.05654 -11.72576 -11.71886 -11.12275 -10.63191 -10.37213 -10.27465 -9.18502 -8.51666 -8.11984 -6.35377 -0.39901 0.00596 0.03509 0.61558 1.37351 1.40227 1.44103 1.48483 2.02484 2.39020 2.65001 3.08988 3.26190 3.40275 3.67786 3.97403 4.05542 4.20662 4.26265 4.44010 4.46648 4.74205 4.80053 4.90681 4.93716 5.00684 5.08750 5.14512 5.23752 5.31132 5.62181 5.72780 5.96665 6.06901 6.22397 6.72841 7.07624 7.33938 8.84734 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.017897 B = 0.005397 C = 0.004458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.161683 B = 5186.452947 C = 6279.087173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.109 3.891 3 N -0.559 5.559 4 C 0.277 3.723 5 C -0.538 4.538 6 H 0.049 0.951 7 C 0.017 3.983 8 N -0.924 5.924 9 Si 0.961 3.039 10 H -0.264 1.264 11 H -0.279 1.279 12 H -0.280 1.280 13 C 0.383 3.617 14 N -0.590 5.590 15 C 0.112 3.888 16 C -0.080 4.080 17 C -0.110 4.110 18 C 0.077 3.923 19 F -0.135 7.135 20 C -0.086 4.086 21 C -0.202 4.202 22 S 0.066 5.934 23 H 0.054 0.946 24 H 0.049 0.951 25 H 0.100 0.900 26 H 0.091 0.909 27 H 0.084 0.916 28 H 0.028 0.972 29 H 0.012 0.988 30 H 0.267 0.733 31 H 0.143 0.857 32 H 0.173 0.827 33 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.576 -3.052 14.923 15.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.013 4.013 3 N -0.273 5.273 4 C 0.154 3.846 5 C -0.577 4.577 6 H 0.067 0.933 7 C -0.183 4.183 8 N -0.564 5.564 9 Si 0.786 3.214 10 H -0.188 1.188 11 H -0.204 1.204 12 H -0.206 1.206 13 C 0.007 3.993 14 N -0.318 5.318 15 C -0.009 4.009 16 C -0.102 4.102 17 C -0.131 4.131 18 C 0.054 3.946 19 F -0.114 7.114 20 C -0.110 4.110 21 C -0.322 4.322 22 S 0.315 5.685 23 H 0.073 0.927 24 H 0.068 0.932 25 H 0.119 0.881 26 H 0.109 0.891 27 H 0.103 0.897 28 H 0.046 0.954 29 H 0.030 0.970 30 H 0.076 0.924 31 H 0.160 0.840 32 H 0.191 0.809 33 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -3.901 -3.821 14.414 15.413 hybrid contribution 1.193 1.009 -0.459 1.629 sum -2.708 -2.812 13.954 14.490 Atomic orbital electron populations 1.22176 0.93915 1.03968 1.01984 1.21825 0.95792 0.79679 1.03965 1.46847 1.64868 1.13739 1.01883 1.18893 0.95334 0.91914 0.78476 1.21588 0.97669 1.32078 1.06405 0.93258 1.25696 1.01775 0.94485 0.96352 1.70023 1.37560 1.34072 1.14744 0.85575 0.79668 0.78847 0.77352 1.18843 1.20377 1.20571 1.24174 0.93363 0.90128 0.91615 1.66354 1.28565 1.12767 1.24086 1.19371 0.99741 0.96474 0.85317 1.20626 0.99732 0.93278 0.96561 1.21067 1.00654 1.01061 0.90367 1.17204 1.04920 0.94108 0.78362 1.91492 1.94100 1.92596 1.33188 1.20222 1.01000 0.96402 0.93341 1.23290 1.12658 0.98012 0.98286 1.84190 1.72519 1.13755 0.98002 0.92674 0.93209 0.88091 0.89093 0.89734 0.95415 0.96998 0.92392 0.83950 0.80915 0.82380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.10 10.24 71.98 0.74 -3.36 16 2 C 0.11 3.40 6.11 86.38 0.53 3.93 16 3 N -0.56 -23.31 2.54 -711.64 -1.81 -25.12 16 4 C 0.28 14.21 5.27 85.63 0.45 14.66 16 5 C -0.54 -29.88 9.39 25.60 0.24 -29.64 16 6 H 0.05 2.75 7.81 -2.91 -0.02 2.73 16 7 C 0.02 0.92 5.46 84.65 0.46 1.38 16 8 N -0.92 -54.07 13.29 21.45 0.28 -53.78 16 9 Si 0.96 43.98 29.54 68.60 2.03 46.01 16 10 H -0.26 -11.44 7.11 99.48 0.71 -10.74 16 11 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 12 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 13 C 0.38 15.73 7.87 179.75 1.41 17.15 16 14 N -0.59 -26.68 9.79 -189.19 -1.85 -28.53 16 15 C 0.11 4.25 6.94 39.74 0.28 4.53 16 16 C -0.08 -2.50 10.09 22.72 0.23 -2.27 16 17 C -0.11 -2.67 9.97 22.18 0.22 -2.45 16 18 C 0.08 1.91 7.30 22.35 0.16 2.07 16 19 F -0.14 -3.14 17.27 44.97 0.78 -2.37 16 20 C -0.09 -2.25 10.03 22.44 0.23 -2.02 16 21 C -0.20 -6.56 6.52 22.89 0.15 -6.41 16 22 S 0.07 2.06 21.89 -56.49 -1.24 0.83 16 23 H 0.05 1.39 8.14 -2.38 -0.02 1.37 16 24 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 25 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 26 H 0.09 2.87 8.07 -2.39 -0.02 2.85 16 27 H 0.08 2.27 7.04 -2.39 -0.02 2.25 16 28 H 0.03 1.46 8.07 -2.38 -0.02 1.44 16 29 H 0.01 0.70 7.60 -2.39 -0.02 0.68 16 30 H 0.27 14.76 8.31 -92.71 -0.77 13.99 16 31 H 0.14 4.25 8.06 -2.91 -0.02 4.23 16 32 H 0.17 2.96 8.06 -2.91 -0.02 2.94 16 33 H 0.16 3.25 8.06 -2.91 -0.02 3.23 16 Total: -1.00 -65.48 306.33 4.41 -61.07 By element: Atomic # 1 Polarization: 3.20 SS G_CDS: 1.13 Total: 4.33 kcal Atomic # 6 Polarization: -7.53 SS G_CDS: 5.10 Total: -2.43 kcal Atomic # 7 Polarization: -104.05 SS G_CDS: -3.38 Total: -107.43 kcal Atomic # 9 Polarization: -3.14 SS G_CDS: 0.78 Total: -2.37 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Atomic # 16 Polarization: 2.06 SS G_CDS: -1.24 Total: 0.83 kcal Total: -65.48 4.41 -61.07 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603302774.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.064 kcal (2) G-P(sol) polarization free energy of solvation -65.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds