Wall clock time and date at job start Tue Mar 31 2020 01:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46899 * 109.47008 * 2 1 4 4 C 1.46895 * 111.00291 * 295.14745 * 3 2 1 5 5 C 1.50696 * 109.46974 * 290.11393 * 4 3 2 6 6 H 1.07997 * 120.00463 * 355.10709 * 5 4 3 7 7 C 1.37880 * 119.99942 * 175.10675 * 5 4 3 8 8 N 1.31517 * 119.99875 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00151 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47299 * 60.00235 * 9 7 5 11 11 H 1.48499 * 109.47373 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47098 * 300.00454 * 9 7 5 13 13 C 1.38560 * 110.99923 * 59.10473 * 3 2 1 14 14 N 1.32953 * 120.69063 * 235.99445 * 13 3 2 15 15 C 1.32216 * 121.33364 * 180.02562 * 14 13 3 16 16 Cl 1.73602 * 118.83513 * 179.97438 * 15 14 13 17 17 N 1.31619 * 122.33008 * 0.02562 * 15 14 13 18 18 C 1.33572 * 120.41686 * 0.02562 * 17 15 14 19 19 C 1.45917 * 134.87319 * 179.97438 * 18 17 15 20 20 C 1.34619 * 107.05490 * 180.02562 * 19 18 17 21 21 N 1.36402 * 109.87837 * 0.02562 * 20 19 18 22 22 H 0.97005 * 125.09946 * 180.02562 * 21 20 19 23 23 C 1.37586 * 109.79452 * 359.97438 * 21 20 19 24 24 H 1.09003 * 109.46889 * 64.55892 * 1 2 3 25 25 H 1.09001 * 109.47100 * 184.55316 * 1 2 3 26 26 H 1.08997 * 109.47432 * 304.55934 * 1 2 3 27 27 H 1.08996 * 109.47441 * 239.99933 * 2 1 3 28 28 H 1.09004 * 109.47202 * 119.99983 * 2 1 3 29 29 H 1.08998 * 109.47089 * 50.11084 * 4 3 2 30 30 H 1.09000 * 109.47128 * 170.11642 * 4 3 2 31 31 H 0.96998 * 119.99542 * 179.97438 * 8 7 5 32 32 H 1.08002 * 126.47364 * 0.04877 * 19 18 17 33 33 H 1.08001 * 125.06099 * 180.26537 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6457 2.0756 -1.2414 5 6 2.4343 1.5040 -2.3913 6 1 3.1983 0.7633 -2.2069 7 6 2.1803 1.9265 -3.6790 8 7 1.2502 2.8288 -3.9035 9 14 3.1572 1.2175 -5.1045 10 1 2.9526 -0.2522 -5.1624 11 1 2.6960 1.8323 -6.3751 12 1 4.6002 1.5090 -4.9092 13 6 1.5589 2.0745 1.1100 14 7 0.8764 3.2069 0.9704 15 6 0.4313 3.8754 2.0207 16 17 -0.4523 5.3474 1.7633 17 7 0.6352 3.4649 3.2545 18 6 1.3123 2.3377 3.4889 19 6 1.7127 1.6074 4.6871 20 6 2.3906 0.5187 4.2780 21 7 2.4546 0.4971 2.9156 22 1 2.8920 -0.1898 2.3886 23 6 1.8048 1.5954 2.4011 24 1 -0.3633 0.4415 -0.9280 25 1 -0.3633 -1.0244 0.0816 26 1 -0.3634 0.5829 0.8463 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 0.5806 1.9377 -1.4272 30 1 1.8631 3.1394 -1.1450 31 1 1.0718 3.1263 -4.8093 32 1 1.5041 1.8873 5.7092 33 1 2.8166 -0.2285 4.9310 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693057859.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:55:41 Heat of formation + Delta-G solvation = 92.668035 kcal Electronic energy + Delta-G solvation = -19723.631369 eV Core-core repulsion = 16618.629752 eV Total energy + Delta-G solvation = -3105.001617 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.079 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.82305 -38.78653 -37.58114 -36.21499 -33.04106 -32.48971 -30.36746 -29.95269 -29.27443 -26.81637 -24.05671 -23.40712 -22.77280 -21.04401 -20.17181 -18.65251 -17.07136 -16.50079 -16.21426 -15.75910 -15.17566 -14.89980 -14.55119 -14.07797 -13.53665 -13.36169 -13.24743 -12.96780 -12.55372 -12.12809 -11.68196 -11.38736 -11.15802 -11.05073 -11.00954 -10.88231 -10.85472 -10.58693 -10.51345 -10.10583 -9.44924 -8.82882 -8.75775 -8.59076 -8.38070 -7.47489 -6.09837 -4.14658 1.06517 1.40319 1.84443 2.62504 3.04177 3.26778 3.32591 3.33625 3.91909 4.13280 4.29452 4.44732 4.78307 4.88528 5.07463 5.23453 5.25266 5.45356 5.49220 5.58156 5.74180 5.98085 6.18208 6.29709 6.34079 6.51653 6.61436 6.94035 7.23419 7.34166 7.38856 7.59919 7.76752 7.97425 8.27467 8.43588 8.90946 9.49019 10.99881 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.017862 B = 0.006125 C = 0.004889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.226580 B = 4570.571937 C = 5725.438871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.067 3.933 3 N -0.468 5.468 4 C 0.196 3.804 5 C -0.525 4.525 6 H 0.062 0.938 7 C 0.062 3.938 8 N -0.887 5.887 9 Si 0.899 3.101 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.411 3.589 14 N -0.527 5.527 15 C 0.372 3.628 16 Cl 0.010 6.990 17 N -0.510 5.510 18 C 0.143 3.857 19 C -0.201 4.201 20 C 0.080 3.920 21 N -0.564 5.564 22 H 0.422 0.578 23 C -0.032 4.032 24 H 0.078 0.922 25 H 0.059 0.941 26 H 0.043 0.957 27 H 0.105 0.895 28 H 0.052 0.948 29 H 0.025 0.975 30 H 0.050 0.950 31 H 0.264 0.736 32 H 0.156 0.844 33 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.200 -6.076 14.406 15.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.059 4.059 3 N -0.184 5.184 4 C 0.073 3.927 5 C -0.564 4.564 6 H 0.080 0.920 7 C -0.141 4.141 8 N -0.525 5.525 9 Si 0.726 3.274 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.162 3.838 14 N -0.252 5.252 15 C 0.075 3.925 16 Cl 0.037 6.963 17 N -0.231 5.231 18 C 0.007 3.993 19 C -0.228 4.228 20 C -0.053 4.053 21 N -0.168 5.168 22 H 0.261 0.739 23 C -0.146 4.146 24 H 0.096 0.904 25 H 0.078 0.922 26 H 0.062 0.938 27 H 0.124 0.876 28 H 0.071 0.929 29 H 0.043 0.957 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.173 0.827 33 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 0.113 -5.135 14.028 14.939 hybrid contribution 0.418 -1.019 -1.047 1.519 sum 0.531 -6.153 12.982 14.376 Atomic orbital electron populations 1.22405 0.96946 1.01723 1.03106 1.22150 0.93775 0.87475 1.02527 1.59349 1.51441 1.03513 1.04065 1.19922 0.96408 0.95050 0.81288 1.21047 1.20034 1.24658 0.90659 0.92006 1.24945 0.95275 0.95071 0.98794 1.69966 1.31314 1.29792 1.21390 0.86559 0.80356 0.79102 0.81360 1.20253 1.21202 1.20179 1.19474 0.86389 0.89284 0.88676 1.68091 1.14369 1.09478 1.33275 1.22353 0.94657 0.90941 0.84566 1.98391 1.72306 1.29256 1.96321 1.67235 1.18838 1.14794 1.22243 1.19835 0.96012 0.90324 0.93162 1.21350 1.08098 0.96457 0.96846 1.22035 1.00441 0.99638 0.83154 1.41671 1.47390 1.21512 1.06201 0.73886 1.19347 1.05971 0.93877 0.95452 0.90357 0.92191 0.93796 0.87649 0.92945 0.95735 0.93194 0.92608 0.82663 0.80164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.09 9.34 37.16 0.35 -2.74 16 2 C 0.07 1.14 5.68 -3.82 -0.02 1.11 16 3 N -0.47 -9.70 4.72 -174.31 -0.82 -10.52 16 4 C 0.20 4.97 3.95 -4.98 -0.02 4.95 16 5 C -0.53 -14.03 8.41 -34.44 -0.29 -14.32 16 6 H 0.06 1.60 7.57 -52.49 -0.40 1.20 16 7 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 8 N -0.89 -25.75 13.29 55.43 0.74 -25.01 16 9 Si 0.90 20.85 29.54 -169.99 -5.02 15.83 16 10 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 11 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 13 C 0.41 8.28 4.88 -154.69 -0.75 7.52 16 14 N -0.53 -11.50 8.63 -10.80 -0.09 -11.59 16 15 C 0.37 7.46 8.17 -91.94 -0.75 6.71 16 16 Cl 0.01 0.17 29.26 -51.86 -1.52 -1.35 16 17 N -0.51 -9.69 10.46 -8.56 -0.09 -9.78 16 18 C 0.14 2.44 7.57 -83.15 -0.63 1.81 16 19 C -0.20 -2.45 11.07 -37.79 -0.42 -2.87 16 20 C 0.08 0.75 11.82 -16.80 -0.20 0.56 16 21 N -0.56 -6.77 5.55 -10.52 -0.06 -6.83 16 22 H 0.42 4.15 7.31 -40.82 -0.30 3.85 16 23 C -0.03 -0.54 6.62 -83.77 -0.55 -1.09 16 24 H 0.08 1.53 6.54 -51.93 -0.34 1.19 16 25 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 26 H 0.04 0.78 7.03 -51.93 -0.37 0.41 16 27 H 0.11 1.86 7.12 -51.93 -0.37 1.49 16 28 H 0.05 0.70 5.49 -51.93 -0.29 0.42 16 29 H 0.02 0.67 6.12 -51.93 -0.32 0.35 16 30 H 0.05 1.43 7.37 -51.93 -0.38 1.04 16 31 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 32 H 0.16 1.53 8.06 -52.49 -0.42 1.11 16 33 H 0.18 0.81 8.06 -52.49 -0.42 0.39 16 LS Contribution 292.82 15.07 4.41 4.41 Total: -1.00 -31.84 292.82 -9.00 -40.84 By element: Atomic # 1 Polarization: 3.91 SS G_CDS: -3.16 Total: 0.76 kcal Atomic # 6 Polarization: 6.63 SS G_CDS: -3.39 Total: 3.24 kcal Atomic # 7 Polarization: -63.41 SS G_CDS: -0.33 Total: -63.73 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Atomic # 17 Polarization: 0.17 SS G_CDS: -1.52 Total: -1.35 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -31.84 -9.00 -40.84 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693057859.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.511 kcal (2) G-P(sol) polarization free energy of solvation -31.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.843 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds