Wall clock time and date at job start Tue Mar 31 2020 01:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46899 * 109.47008 * 2 1 4 4 C 1.46895 * 111.00291 * 295.14745 * 3 2 1 5 5 C 1.50696 * 109.46974 * 290.11393 * 4 3 2 6 6 H 1.07997 * 120.00463 * 355.10709 * 5 4 3 7 7 C 1.37880 * 119.99942 * 175.10675 * 5 4 3 8 8 N 1.31517 * 119.99875 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00151 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47299 * 60.00235 * 9 7 5 11 11 H 1.48499 * 109.47373 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47098 * 300.00454 * 9 7 5 13 13 C 1.38560 * 110.99923 * 59.10473 * 3 2 1 14 14 N 1.32953 * 120.69063 * 235.99445 * 13 3 2 15 15 C 1.32216 * 121.33364 * 180.02562 * 14 13 3 16 16 Cl 1.73602 * 118.83513 * 179.97438 * 15 14 13 17 17 N 1.31619 * 122.33008 * 0.02562 * 15 14 13 18 18 C 1.33572 * 120.41686 * 0.02562 * 17 15 14 19 19 C 1.45917 * 134.87319 * 179.97438 * 18 17 15 20 20 C 1.34619 * 107.05490 * 180.02562 * 19 18 17 21 21 N 1.36402 * 109.87837 * 0.02562 * 20 19 18 22 22 H 0.97005 * 125.09946 * 180.02562 * 21 20 19 23 23 C 1.37586 * 109.79452 * 359.97438 * 21 20 19 24 24 H 1.09003 * 109.46889 * 64.55892 * 1 2 3 25 25 H 1.09001 * 109.47100 * 184.55316 * 1 2 3 26 26 H 1.08997 * 109.47432 * 304.55934 * 1 2 3 27 27 H 1.08996 * 109.47441 * 239.99933 * 2 1 3 28 28 H 1.09004 * 109.47202 * 119.99983 * 2 1 3 29 29 H 1.08998 * 109.47089 * 50.11084 * 4 3 2 30 30 H 1.09000 * 109.47128 * 170.11642 * 4 3 2 31 31 H 0.96998 * 119.99542 * 179.97438 * 8 7 5 32 32 H 1.08002 * 126.47364 * 0.04877 * 19 18 17 33 33 H 1.08001 * 125.06099 * 180.26537 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6457 2.0756 -1.2414 5 6 2.4343 1.5040 -2.3913 6 1 3.1983 0.7633 -2.2069 7 6 2.1803 1.9265 -3.6790 8 7 1.2502 2.8288 -3.9035 9 14 3.1572 1.2175 -5.1045 10 1 2.9526 -0.2522 -5.1624 11 1 2.6960 1.8323 -6.3751 12 1 4.6002 1.5090 -4.9092 13 6 1.5589 2.0745 1.1100 14 7 0.8764 3.2069 0.9704 15 6 0.4313 3.8754 2.0207 16 17 -0.4523 5.3474 1.7633 17 7 0.6352 3.4649 3.2545 18 6 1.3123 2.3377 3.4889 19 6 1.7127 1.6074 4.6871 20 6 2.3906 0.5187 4.2780 21 7 2.4546 0.4971 2.9156 22 1 2.8920 -0.1898 2.3886 23 6 1.8048 1.5954 2.4011 24 1 -0.3633 0.4415 -0.9280 25 1 -0.3633 -1.0244 0.0816 26 1 -0.3634 0.5829 0.8463 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 0.5806 1.9377 -1.4272 30 1 1.8631 3.1394 -1.1450 31 1 1.0718 3.1263 -4.8093 32 1 1.5041 1.8873 5.7092 33 1 2.8166 -0.2285 4.9310 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693057859.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:55:41 Heat of formation + Delta-G solvation = 70.308099 kcal Electronic energy + Delta-G solvation = -19724.600968 eV Core-core repulsion = 16618.629752 eV Total energy + Delta-G solvation = -3105.971216 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.079 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.06905 -40.08507 -39.06392 -37.62790 -34.94021 -34.05069 -31.65926 -31.20306 -30.76069 -28.60286 -25.52543 -25.04208 -24.19980 -22.33852 -21.43571 -19.91795 -18.50420 -18.23579 -17.80916 -17.21950 -16.67728 -16.30127 -16.08900 -15.58624 -15.05630 -14.63764 -14.47464 -14.06842 -13.95861 -13.78896 -13.27863 -13.00358 -12.73707 -12.68470 -12.52937 -12.45315 -12.37362 -12.21263 -12.07832 -11.87249 -11.40295 -10.62995 -10.26756 -10.20559 -9.59860 -8.87635 -8.19625 -6.32742 -0.25888 0.06571 0.43470 1.42208 1.45656 1.53427 1.64583 2.00968 2.35576 2.55037 2.75956 3.12598 3.13808 3.50890 3.63444 3.85800 4.10249 4.12025 4.30565 4.39770 4.56524 4.74764 4.83331 4.97873 5.08620 5.20783 5.32088 5.35158 5.54484 5.61072 5.78369 5.96256 6.13349 6.36016 6.47187 6.79556 7.02761 7.36571 8.91002 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.017862 B = 0.006125 C = 0.004889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.226580 B = 4570.571937 C = 5725.438871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.065 3.935 3 N -0.472 5.472 4 C 0.221 3.779 5 C -0.533 4.533 6 H 0.072 0.928 7 C 0.006 3.994 8 N -0.930 5.930 9 Si 0.972 3.028 10 H -0.260 1.260 11 H -0.288 1.288 12 H -0.270 1.270 13 C 0.389 3.611 14 N -0.570 5.570 15 C 0.350 3.650 16 Cl 0.014 6.986 17 N -0.515 5.515 18 C 0.117 3.883 19 C -0.217 4.217 20 C 0.128 3.872 21 N -0.553 5.553 22 H 0.435 0.565 23 C -0.038 4.038 24 H 0.039 0.961 25 H 0.096 0.904 26 H 0.030 0.970 27 H 0.099 0.901 28 H 0.097 0.903 29 H -0.006 1.006 30 H 0.005 0.995 31 H 0.264 0.736 32 H 0.181 0.819 33 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.071 -9.352 16.606 19.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.060 4.060 3 N -0.189 5.189 4 C 0.097 3.903 5 C -0.572 4.572 6 H 0.090 0.910 7 C -0.193 4.193 8 N -0.569 5.569 9 Si 0.796 3.204 10 H -0.185 1.185 11 H -0.213 1.213 12 H -0.195 1.195 13 C 0.141 3.859 14 N -0.296 5.296 15 C 0.052 3.948 16 Cl 0.041 6.959 17 N -0.236 5.236 18 C -0.020 4.020 19 C -0.243 4.243 20 C -0.005 4.005 21 N -0.158 5.158 22 H 0.277 0.723 23 C -0.153 4.153 24 H 0.058 0.942 25 H 0.114 0.886 26 H 0.049 0.951 27 H 0.117 0.883 28 H 0.115 0.885 29 H 0.012 0.988 30 H 0.023 0.977 31 H 0.073 0.927 32 H 0.198 0.802 33 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges 1.997 -8.444 16.261 18.431 hybrid contribution -0.156 -0.061 -1.515 1.524 sum 1.841 -8.504 14.746 17.122 Atomic orbital electron populations 1.22282 0.97164 1.03225 1.00429 1.22313 0.93624 0.85797 1.04304 1.59340 1.52389 1.04689 1.02441 1.19290 0.94413 0.93034 0.83597 1.21402 1.20014 1.24495 0.91254 0.91009 1.25922 0.96224 0.95285 1.01897 1.70135 1.33282 1.31521 1.21951 0.85404 0.78677 0.79005 0.77316 1.18459 1.21317 1.19497 1.19539 0.87407 0.89332 0.89643 1.67934 1.16011 1.10829 1.34814 1.22449 0.95846 0.91640 0.84817 1.98368 1.72183 1.28903 1.96400 1.67282 1.19056 1.15854 1.21413 1.20721 0.95835 0.89996 0.95428 1.21816 1.09094 0.96796 0.96581 1.23073 0.96536 0.98903 0.81963 1.41820 1.46275 1.20199 1.07491 0.72296 1.19135 1.06644 0.95650 0.93859 0.94220 0.88564 0.95080 0.88293 0.88519 0.98817 0.97726 0.92689 0.80192 0.73674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.85 9.34 71.98 0.67 -5.18 16 2 C 0.06 2.15 5.68 86.30 0.49 2.64 16 3 N -0.47 -20.03 4.72 -705.39 -3.33 -23.36 16 4 C 0.22 11.90 3.95 85.56 0.34 12.24 16 5 C -0.53 -29.24 8.41 25.60 0.22 -29.03 16 6 H 0.07 3.70 7.57 -2.91 -0.02 3.68 16 7 C 0.01 0.32 5.46 84.66 0.46 0.78 16 8 N -0.93 -56.36 13.29 21.45 0.28 -56.07 16 9 Si 0.97 43.08 29.54 68.60 2.03 45.11 16 10 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 11 H -0.29 -12.70 7.11 99.48 0.71 -11.99 16 12 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 13 C 0.39 16.03 4.88 133.23 0.65 16.69 16 14 N -0.57 -26.44 8.63 -188.08 -1.62 -28.07 16 15 C 0.35 14.74 8.17 180.81 1.48 16.21 16 16 Cl 0.01 0.52 29.26 -2.72 -0.08 0.44 16 17 N -0.52 -19.83 10.46 -181.00 -1.89 -21.73 16 18 C 0.12 3.83 7.57 41.44 0.31 4.14 16 19 C -0.22 -4.38 11.07 23.43 0.26 -4.12 16 20 C 0.13 1.61 11.82 83.15 0.98 2.59 16 21 N -0.55 -10.83 5.55 -187.19 -1.04 -11.87 16 22 H 0.43 6.33 7.31 -92.70 -0.68 5.65 16 23 C -0.04 -1.21 6.62 39.22 0.26 -0.95 16 24 H 0.04 1.63 6.54 -2.39 -0.02 1.62 16 25 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 26 H 0.03 1.11 7.03 -2.39 -0.02 1.09 16 27 H 0.10 3.40 7.12 -2.39 -0.02 3.38 16 28 H 0.10 2.28 5.49 -2.39 -0.01 2.27 16 29 H -0.01 -0.36 6.12 -2.39 -0.01 -0.37 16 30 H 0.00 0.28 7.37 -2.39 -0.02 0.27 16 31 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 32 H 0.18 2.69 8.06 -2.91 -0.02 2.67 16 33 H 0.25 -0.06 8.06 -2.91 -0.02 -0.08 16 Total: -1.00 -76.42 292.82 0.96 -75.46 By element: Atomic # 1 Polarization: 3.58 SS G_CDS: 0.49 Total: 4.07 kcal Atomic # 6 Polarization: 9.89 SS G_CDS: 6.12 Total: 16.01 kcal Atomic # 7 Polarization: -133.49 SS G_CDS: -7.60 Total: -141.09 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Atomic # 17 Polarization: 0.52 SS G_CDS: -0.08 Total: 0.44 kcal Total: -76.42 0.96 -75.46 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693057859.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.771 kcal (2) G-P(sol) polarization free energy of solvation -76.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds