Wall clock time and date at job start Tue Mar 31 2020 01:57:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21319 * 120.00162 * 2 1 4 4 C 1.46626 * 120.00135 * 179.97438 * 2 1 3 5 5 C 1.38649 * 126.50807 * 359.97438 * 4 2 1 6 6 N 1.34086 * 108.36644 * 179.97438 * 5 4 2 7 7 H 0.96994 * 125.35293 * 180.02562 * 6 5 4 8 8 C 1.37886 * 109.29747 * 359.97438 * 6 5 4 9 9 C 1.46672 * 125.81111 * 180.02562 * 8 6 5 10 10 O 1.21602 * 119.99755 * 180.02562 * 9 8 6 11 11 O 1.34863 * 119.99771 * 0.02562 * 9 8 6 12 12 C 1.45206 * 116.99691 * 180.02562 * 11 9 8 13 13 C 1.50699 * 109.47021 * 180.02562 * 12 11 9 14 14 O 1.21297 * 119.99980 * 0.02562 * 13 12 11 15 15 N 1.34779 * 120.00033 * 180.02562 * 13 12 11 16 16 C 1.37088 * 120.00081 * 180.02562 * 15 13 12 17 17 H 1.08003 * 119.99914 * 359.97438 * 16 15 13 18 18 C 1.38949 * 120.00230 * 179.97438 * 16 15 13 19 19 N 1.31416 * 119.99807 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00303 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46948 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.46809 * 120.00147 * 20 18 16 23 23 H 1.48497 * 109.47378 * 239.99941 * 20 18 16 24 24 C 1.36334 * 108.37703 * 0.26771 * 8 6 5 25 25 H 1.09002 * 109.46992 * 269.99778 * 1 2 3 26 26 H 1.08997 * 109.46899 * 29.99634 * 1 2 3 27 27 H 1.09003 * 109.46875 * 150.00113 * 1 2 3 28 28 H 1.08001 * 125.81626 * 0.02562 * 5 4 2 29 29 H 1.09004 * 109.47122 * 299.99998 * 12 11 9 30 30 H 1.09000 * 109.47070 * 60.00023 * 12 11 9 31 31 H 0.97004 * 119.99472 * 359.97438 * 15 13 12 32 32 H 0.97002 * 120.00022 * 179.97438 * 19 18 16 33 33 H 1.07999 * 126.51330 * 179.73911 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1136 1.0506 0.0000 4 6 2.2401 -1.2698 0.0006 5 6 1.6875 -2.5414 0.0016 6 7 2.6862 -3.4361 0.0013 7 1 2.5763 -4.3998 0.0015 8 6 3.8940 -2.7709 -0.0006 9 6 5.2195 -3.3987 -0.0021 10 8 6.2198 -2.7072 -0.0032 11 8 5.3290 -4.7429 -0.0021 12 6 6.6720 -5.2949 -0.0031 13 6 6.5965 -6.8000 -0.0036 14 8 5.5169 -7.3530 -0.0038 15 7 7.7285 -7.5315 -0.0040 16 6 7.6598 -8.9007 -0.0051 17 1 6.6985 -9.3931 -0.0052 18 6 8.8268 -9.6549 -0.0060 19 7 9.9963 -9.0556 -0.0063 20 14 8.7332 -11.5206 -0.0067 21 1 7.3101 -11.9448 -0.0068 22 1 9.4070 -12.0494 -1.2198 23 1 9.4081 -12.0506 1.2052 24 6 3.6463 -1.4302 0.0046 25 1 -0.3633 0.0000 1.0277 26 1 -0.3633 0.8900 -0.5138 27 1 -0.3633 -0.8900 -0.5138 28 1 0.6324 -2.7719 0.0018 29 1 7.2028 -4.9577 -0.8934 30 1 7.2040 -4.9577 0.8866 31 1 8.5917 -7.0891 -0.0043 32 1 10.8111 -9.5821 -0.0066 33 1 4.3831 -0.6406 0.0087 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731236892.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:57:13 Heat of formation + Delta-G solvation = -142.811538 kcal Electronic energy + Delta-G solvation = -20269.244664 eV Core-core repulsion = 16681.029971 eV Total energy + Delta-G solvation = -3588.214693 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.094 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.69016 -41.29999 -40.02471 -39.65290 -37.58801 -36.06237 -33.45200 -32.84023 -31.78759 -30.55575 -29.35187 -26.69770 -24.50335 -23.89158 -21.49521 -21.46945 -20.56870 -20.10933 -19.30065 -18.19940 -17.85289 -17.77889 -16.88214 -16.41464 -16.19475 -16.11319 -15.77982 -15.72823 -15.60587 -14.93357 -14.73026 -14.63210 -13.95521 -13.76572 -13.58605 -13.36331 -12.96345 -12.94075 -12.85139 -12.48926 -12.12111 -12.04424 -11.98163 -11.60960 -10.75349 -10.55839 -10.33343 -10.14825 -9.58014 -8.54779 -6.05691 0.05167 0.43284 1.18600 1.33062 1.43218 1.57473 1.75164 1.83812 1.96966 2.25274 2.27894 2.98391 3.10890 3.36419 3.64588 3.87438 3.97276 4.08262 4.10109 4.17120 4.27705 4.57686 4.73699 4.84567 4.92655 5.08781 5.26096 5.34967 5.44289 5.48574 5.85945 6.24994 6.39783 6.50419 6.77024 6.99791 7.36380 7.88509 8.62405 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.053174 B = 0.002735 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 526.449168 B =10234.049381 C =10740.050940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.424 3.576 3 O -0.527 6.527 4 C -0.302 4.302 5 C 0.152 3.848 6 N -0.504 5.504 7 H 0.443 0.557 8 C -0.070 4.070 9 C 0.531 3.469 10 O -0.528 6.528 11 O -0.340 6.340 12 C 0.073 3.927 13 C 0.439 3.561 14 O -0.616 6.616 15 N -0.557 5.557 16 C -0.337 4.337 17 H 0.087 0.913 18 C -0.010 4.010 19 N -0.916 5.916 20 Si 0.999 3.001 21 H -0.269 1.269 22 H -0.270 1.270 23 H -0.270 1.270 24 C -0.050 4.050 25 H 0.116 0.884 26 H 0.084 0.916 27 H 0.118 0.882 28 H 0.252 0.748 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.400 0.600 32 H 0.281 0.719 33 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.206 11.694 0.098 21.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.307 3.693 3 O -0.407 6.407 4 C -0.308 4.308 5 C 0.006 3.994 6 N -0.098 5.098 7 H 0.285 0.715 8 C -0.178 4.178 9 C 0.378 3.622 10 O -0.418 6.418 11 O -0.255 6.255 12 C -0.005 4.005 13 C 0.225 3.775 14 O -0.503 6.503 15 N -0.194 5.194 16 C -0.466 4.466 17 H 0.105 0.895 18 C -0.211 4.211 19 N -0.556 5.556 20 Si 0.822 3.178 21 H -0.194 1.194 22 H -0.195 1.195 23 H -0.195 1.195 24 C -0.076 4.076 25 H 0.134 0.866 26 H 0.103 0.897 27 H 0.137 0.863 28 H 0.268 0.732 29 H 0.125 0.875 30 H 0.125 0.875 31 H 0.234 0.766 32 H 0.091 0.909 33 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -17.994 11.767 0.096 21.500 hybrid contribution 1.342 -0.936 0.002 1.636 sum -16.652 10.831 0.098 19.865 Atomic orbital electron populations 1.22231 0.89567 1.06398 1.06263 1.22269 0.93145 0.85399 0.68503 1.90553 1.73667 1.35728 1.40783 1.20551 0.92787 0.95888 1.21590 1.23660 0.95910 0.86017 0.93786 1.41994 1.04440 1.11292 1.52069 0.71519 1.18668 0.83308 0.91701 1.24123 1.20310 0.89033 0.80245 0.72607 1.90885 1.38383 1.64330 1.48197 1.86562 1.32793 1.22170 1.84022 1.22566 0.81357 0.90982 1.05547 1.19978 0.84765 0.88478 0.84271 1.90506 1.29232 1.73617 1.56908 1.41755 1.07168 1.06684 1.63832 1.19762 0.94676 0.81533 1.50580 0.89543 1.26164 0.93837 1.05461 0.95629 1.69683 0.98170 1.38592 1.49112 0.84778 0.78573 0.76031 0.78394 1.19351 1.19537 1.19524 1.21337 0.97005 0.92862 0.96356 0.86612 0.89717 0.86327 0.73220 0.87510 0.87498 0.76580 0.90946 0.84111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.14 10.02 71.24 0.71 -0.42 16 2 C 0.42 7.51 7.24 27.88 0.20 7.71 16 3 O -0.53 -14.81 17.67 -3.15 -0.06 -14.87 16 4 C -0.30 -5.37 6.11 -20.18 -0.12 -5.50 16 5 C 0.15 1.45 11.28 84.45 0.95 2.40 16 6 N -0.50 -8.21 6.00 -183.19 -1.10 -9.31 16 7 H 0.44 6.10 8.96 -92.71 -0.83 5.27 16 8 C -0.07 -1.80 7.02 39.95 0.28 -1.52 16 9 C 0.53 17.37 7.93 70.02 0.56 17.92 16 10 O -0.53 -19.59 16.65 19.50 0.32 -19.27 16 11 O -0.34 -12.11 9.77 -51.37 -0.50 -12.61 16 12 C 0.07 2.69 5.96 71.24 0.42 3.11 16 13 C 0.44 20.75 7.86 87.66 0.69 21.44 16 14 O -0.62 -33.35 16.08 15.72 0.25 -33.10 16 15 N -0.56 -28.02 5.29 -306.98 -1.62 -29.64 16 16 C -0.34 -18.48 9.68 84.04 0.81 -17.67 16 17 H 0.09 5.01 7.16 -2.91 -0.02 4.99 16 18 C -0.01 -0.53 5.50 84.93 0.47 -0.06 16 19 N -0.92 -48.14 13.05 21.66 0.28 -47.86 16 20 Si 1.00 41.20 29.55 68.60 2.03 43.23 16 21 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 22 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 23 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 24 C -0.05 -1.28 10.37 22.64 0.23 -1.04 16 25 H 0.12 0.32 8.14 -2.39 -0.02 0.30 16 26 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.12 -0.12 7.20 -2.39 -0.02 -0.14 16 28 H 0.25 -0.86 7.49 -2.91 -0.02 -0.88 16 29 H 0.11 3.59 8.14 -2.38 -0.02 3.57 16 30 H 0.11 3.59 8.14 -2.39 -0.02 3.57 16 31 H 0.40 19.07 7.90 -92.71 -0.73 18.34 16 32 H 0.28 13.75 8.31 -92.71 -0.77 12.98 16 33 H 0.14 3.98 8.06 -2.91 -0.02 3.96 16 Total: -1.00 -79.29 311.97 4.44 -74.84 By element: Atomic # 1 Polarization: 22.56 SS G_CDS: -0.37 Total: 22.19 kcal Atomic # 6 Polarization: 21.18 SS G_CDS: 5.21 Total: 26.39 kcal Atomic # 7 Polarization: -84.37 SS G_CDS: -2.44 Total: -86.81 kcal Atomic # 8 Polarization: -79.86 SS G_CDS: 0.02 Total: -79.84 kcal Atomic # 14 Polarization: 41.20 SS G_CDS: 2.03 Total: 43.23 kcal Total: -79.29 4.44 -74.84 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731236892.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.968 kcal (2) G-P(sol) polarization free energy of solvation -79.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds