Wall clock time and date at job start Tue Mar 31 2020 01:08:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 119.99840 * 2 1 4 4 H 1.48499 * 109.47277 * 269.99663 * 3 2 1 5 5 H 1.48503 * 109.47381 * 29.99631 * 3 2 1 6 6 H 1.48506 * 109.47198 * 149.99730 * 3 2 1 7 7 C 1.37873 * 119.99771 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99977 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00373 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.47258 * 179.97438 * 9 7 2 11 11 C 1.34779 * 119.99782 * 180.02562 * 10 9 7 12 12 O 1.21275 * 120.00130 * 359.97438 * 11 10 9 13 13 C 1.50699 * 119.99705 * 180.02562 * 11 10 9 14 14 O 1.45196 * 109.47184 * 179.97438 * 13 11 10 15 15 C 1.34711 * 117.00276 * 179.97438 * 14 13 11 16 16 O 1.21468 * 119.99602 * 359.97438 * 15 14 13 17 17 C 1.47739 * 120.00239 * 179.97438 * 15 14 13 18 18 C 1.39619 * 120.53337 * 0.04560 * 17 15 14 19 19 N 1.31645 * 120.67530 * 179.97438 * 18 17 15 20 20 C 1.31914 * 121.95110 * 359.97438 * 19 18 17 21 21 C 1.38809 * 121.01282 * 359.97438 * 20 19 18 22 22 O 1.35923 * 120.40391 * 180.02562 * 21 20 19 23 23 C 1.38875 * 119.19737 * 0.02562 * 21 20 19 24 24 H 0.97002 * 120.00075 * 0.02562 * 1 2 3 25 25 H 1.09009 * 109.46857 * 59.99886 * 9 7 2 26 26 H 1.09002 * 109.47553 * 300.00182 * 9 7 2 27 27 H 0.96994 * 119.99745 * 0.02562 * 10 9 7 28 28 H 1.09001 * 109.47741 * 59.99374 * 13 11 10 29 29 H 1.09013 * 109.47113 * 299.99634 * 13 11 10 30 30 H 1.07996 * 119.65867 * 359.97438 * 18 17 15 31 31 H 1.07997 * 119.49080 * 180.02562 * 20 19 18 32 32 H 0.96696 * 114.00611 * 89.98992 * 22 21 20 33 33 H 1.07997 * 120.88206 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6126 0.0005 11 6 1.7537 -4.8833 0.0000 12 8 0.5614 -5.1049 0.0000 13 6 2.7330 -6.0288 0.0006 14 8 2.0071 -7.2862 0.0005 15 6 2.7407 -8.4160 0.0004 16 8 3.9538 -8.3524 0.0000 17 6 2.0700 -9.7324 0.0009 18 6 0.6765 -9.8185 0.0004 19 7 0.0760 -10.9899 0.0003 20 6 0.7536 -12.1218 0.0001 21 6 2.1416 -12.1243 -0.0005 22 8 2.8274 -13.2979 -0.0012 23 6 2.8213 -10.9132 -0.0004 24 1 -0.4850 0.8401 -0.0004 25 1 0.6247 -2.5570 -0.8898 26 1 0.6240 -2.5567 0.8903 27 1 3.1566 -3.4354 0.0009 28 1 3.3591 -5.9712 0.8910 29 1 3.3604 -5.9709 -0.8890 30 1 0.0853 -8.9147 0.0001 31 1 0.2201 -13.0608 -0.0004 32 1 3.0253 -13.6373 -0.8847 33 1 3.9009 -10.8835 -0.0004 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000732394971.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:08:33 Heat of formation + Delta-G solvation = -126.411181 kcal Electronic energy + Delta-G solvation = -20175.053594 eV Core-core repulsion = 16587.550074 eV Total energy + Delta-G solvation = -3587.503520 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.094 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.24292 -40.20758 -38.75109 -37.71701 -36.52815 -34.29555 -32.97152 -32.44304 -30.92803 -29.24792 -26.86926 -25.20298 -23.91311 -22.67639 -21.53179 -20.01008 -19.24614 -17.98223 -17.70535 -17.37015 -16.79142 -16.67318 -16.42912 -15.66025 -15.32811 -15.10016 -14.74563 -14.29931 -13.85824 -13.76291 -13.28369 -13.14245 -13.03223 -12.63519 -12.03117 -11.92363 -11.82956 -11.12829 -11.03271 -10.95541 -10.82230 -10.40437 -10.36993 -9.90791 -9.47188 -9.46970 -9.24607 -8.81145 -8.03209 -6.21986 -4.29592 0.02581 0.58772 2.13361 2.17002 3.11065 3.20483 3.21554 3.27921 3.30127 3.50677 3.81762 4.00775 4.27820 4.30000 4.35530 4.51100 4.73061 4.92692 5.10594 5.13436 5.15808 5.27329 5.45250 5.53171 5.92908 6.10024 6.94612 7.18421 7.24955 7.34392 7.42502 7.44646 7.58364 7.89162 8.45168 8.67280 8.91470 9.36893 10.88111 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.053596 B = 0.002610 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.302411 B =10726.372361 C =11225.650341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.546 4.546 8 H 0.064 0.936 9 C 0.251 3.749 10 N -0.705 5.705 11 C 0.500 3.500 12 O -0.533 6.533 13 C 0.050 3.950 14 O -0.321 6.321 15 C 0.514 3.486 16 O -0.503 6.503 17 C -0.158 4.158 18 C 0.157 3.843 19 N -0.471 5.471 20 C 0.112 3.888 21 C 0.043 3.957 22 O -0.487 6.487 23 C -0.039 4.039 24 H 0.267 0.733 25 H 0.030 0.970 26 H 0.030 0.970 27 H 0.393 0.607 28 H 0.100 0.900 29 H 0.100 0.900 30 H 0.183 0.817 31 H 0.169 0.831 32 H 0.395 0.605 33 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.506 -23.112 -1.690 24.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.140 4.140 3 Si 0.733 3.267 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.584 4.584 8 H 0.082 0.918 9 C 0.131 3.869 10 N -0.356 5.356 11 C 0.282 3.718 12 O -0.410 6.410 13 C -0.027 4.027 14 O -0.236 6.236 15 C 0.357 3.643 16 O -0.392 6.392 17 C -0.161 4.161 18 C -0.001 4.001 19 N -0.180 5.180 20 C -0.046 4.046 21 C -0.004 4.004 22 O -0.296 6.296 23 C -0.065 4.065 24 H 0.077 0.923 25 H 0.048 0.952 26 H 0.048 0.952 27 H 0.226 0.774 28 H 0.118 0.882 29 H 0.118 0.882 30 H 0.200 0.800 31 H 0.186 0.814 32 H 0.252 0.748 33 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 4.885 -23.045 -1.077 23.582 hybrid contribution 2.112 1.038 -0.493 2.404 sum 6.996 -22.007 -1.570 23.146 Atomic orbital electron populations 1.69971 1.06118 1.27452 1.48606 1.24952 0.94940 0.99508 0.94591 0.86387 0.79600 0.82501 0.78257 1.20422 1.20964 1.19721 1.21198 0.93328 0.90286 1.53602 0.91764 1.19191 0.88143 0.81487 0.98086 1.46366 1.11573 1.05304 1.72319 1.19836 0.89075 0.83961 0.78889 1.90714 1.16241 1.84514 1.49565 1.22948 0.94471 0.80430 1.04888 1.86577 1.39838 1.13879 1.83306 1.20843 0.85490 0.84828 0.73101 1.90852 1.14616 1.87948 1.45753 1.20094 0.95249 0.90939 1.09822 1.23513 0.90871 0.96832 0.88889 1.67901 1.39804 0.97933 1.12369 1.23551 0.90698 0.97775 0.92574 1.19310 0.91207 0.85929 1.03962 1.84886 1.75653 1.35102 1.33945 1.22086 1.02118 0.90150 0.92186 0.92340 0.95205 0.95184 0.77385 0.88209 0.88211 0.79993 0.81423 0.74845 0.82662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.58 13.29 55.43 0.74 -24.84 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.91 20.47 29.54 -169.99 -5.02 15.45 16 4 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 7 C -0.55 -14.40 9.28 -34.44 -0.32 -14.72 16 8 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 9 C 0.25 6.43 5.43 -5.20 -0.03 6.40 16 10 N -0.71 -14.10 5.55 -61.47 -0.34 -14.44 16 11 C 0.50 9.58 7.91 -10.98 -0.09 9.49 16 12 O -0.53 -12.50 16.50 -14.10 -0.23 -12.73 16 13 C 0.05 0.71 5.95 36.01 0.21 0.93 16 14 O -0.32 -4.74 9.03 -47.20 -0.43 -5.16 16 15 C 0.51 6.75 7.91 34.61 0.27 7.02 16 16 O -0.50 -7.26 16.21 -19.24 -0.31 -7.57 16 17 C -0.16 -1.73 5.89 -104.85 -0.62 -2.34 16 18 C 0.16 1.70 10.78 -17.12 -0.18 1.52 16 19 N -0.47 -4.93 10.34 -12.78 -0.13 -5.06 16 20 C 0.11 0.89 11.13 -17.31 -0.19 0.70 16 21 C 0.04 0.33 6.73 -39.13 -0.26 0.07 16 22 O -0.49 -2.92 13.52 -19.50 -0.26 -3.18 16 23 C -0.04 -0.36 9.67 -38.70 -0.37 -0.73 16 24 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 25 H 0.03 0.84 8.14 -51.92 -0.42 0.42 16 26 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.39 6.56 8.32 -40.82 -0.34 6.22 16 28 H 0.10 1.23 8.14 -51.93 -0.42 0.80 16 29 H 0.10 1.21 8.14 -51.92 -0.42 0.79 16 30 H 0.18 1.98 7.62 -52.49 -0.40 1.58 16 31 H 0.17 0.87 8.06 -52.49 -0.42 0.45 16 32 H 0.40 0.40 9.06 45.56 0.41 0.81 16 33 H 0.16 1.31 7.73 -52.49 -0.41 0.90 16 LS Contribution 310.68 15.07 4.68 4.68 Total: -1.00 -34.45 310.68 -5.37 -39.82 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -2.38 Total: 3.08 kcal Atomic # 6 Polarization: 11.65 SS G_CDS: -1.68 Total: 9.98 kcal Atomic # 7 Polarization: -44.61 SS G_CDS: 0.26 Total: -44.35 kcal Atomic # 8 Polarization: -27.42 SS G_CDS: -1.23 Total: -28.65 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -34.45 -5.37 -39.82 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732394971.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.594 kcal (2) G-P(sol) polarization free energy of solvation -34.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds