Wall clock time and date at job start Tue Mar 31 2020 01:08:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 119.99840 * 2 1 4 4 H 1.48499 * 109.47277 * 269.99663 * 3 2 1 5 5 H 1.48503 * 109.47381 * 29.99631 * 3 2 1 6 6 H 1.48506 * 109.47198 * 149.99730 * 3 2 1 7 7 C 1.37873 * 119.99771 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99977 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00373 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.47258 * 179.97438 * 9 7 2 11 11 C 1.34779 * 119.99782 * 180.02562 * 10 9 7 12 12 O 1.21275 * 120.00130 * 359.97438 * 11 10 9 13 13 C 1.50699 * 119.99705 * 180.02562 * 11 10 9 14 14 O 1.45196 * 109.47184 * 179.97438 * 13 11 10 15 15 C 1.34711 * 117.00276 * 179.97438 * 14 13 11 16 16 O 1.21468 * 119.99602 * 359.97438 * 15 14 13 17 17 C 1.47739 * 120.00239 * 179.97438 * 15 14 13 18 18 C 1.39619 * 120.53337 * 0.04560 * 17 15 14 19 19 N 1.31645 * 120.67530 * 179.97438 * 18 17 15 20 20 C 1.31914 * 121.95110 * 359.97438 * 19 18 17 21 21 C 1.38809 * 121.01282 * 359.97438 * 20 19 18 22 22 O 1.35923 * 120.40391 * 180.02562 * 21 20 19 23 23 C 1.38875 * 119.19737 * 0.02562 * 21 20 19 24 24 H 0.97002 * 120.00075 * 0.02562 * 1 2 3 25 25 H 1.09009 * 109.46857 * 59.99886 * 9 7 2 26 26 H 1.09002 * 109.47553 * 300.00182 * 9 7 2 27 27 H 0.96994 * 119.99745 * 0.02562 * 10 9 7 28 28 H 1.09001 * 109.47741 * 59.99374 * 13 11 10 29 29 H 1.09013 * 109.47113 * 299.99634 * 13 11 10 30 30 H 1.07996 * 119.65867 * 359.97438 * 18 17 15 31 31 H 1.07997 * 119.49080 * 180.02562 * 20 19 18 32 32 H 0.96696 * 114.00611 * 89.98992 * 22 21 20 33 33 H 1.07997 * 120.88206 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6126 0.0005 11 6 1.7537 -4.8833 0.0000 12 8 0.5614 -5.1049 0.0000 13 6 2.7330 -6.0288 0.0006 14 8 2.0071 -7.2862 0.0005 15 6 2.7407 -8.4160 0.0004 16 8 3.9538 -8.3524 0.0000 17 6 2.0700 -9.7324 0.0009 18 6 0.6765 -9.8185 0.0004 19 7 0.0760 -10.9899 0.0003 20 6 0.7536 -12.1218 0.0001 21 6 2.1416 -12.1243 -0.0005 22 8 2.8274 -13.2979 -0.0012 23 6 2.8213 -10.9132 -0.0004 24 1 -0.4850 0.8401 -0.0004 25 1 0.6247 -2.5570 -0.8898 26 1 0.6240 -2.5567 0.8903 27 1 3.1566 -3.4354 0.0009 28 1 3.3591 -5.9712 0.8910 29 1 3.3604 -5.9709 -0.8890 30 1 0.0853 -8.9147 0.0001 31 1 0.2201 -13.0608 -0.0004 32 1 3.0253 -13.6373 -0.8847 33 1 3.9009 -10.8835 -0.0004 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000732394971.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:08:33 Heat of formation + Delta-G solvation = -153.627555 kcal Electronic energy + Delta-G solvation = -20176.233785 eV Core-core repulsion = 16587.550074 eV Total energy + Delta-G solvation = -3588.683711 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.094 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.12810 -41.16900 -40.29066 -38.28929 -37.66981 -36.18201 -34.41739 -33.74374 -31.66873 -30.69951 -28.58931 -26.15158 -24.64603 -24.53809 -22.49469 -21.65663 -20.05406 -19.21284 -18.79617 -18.21664 -17.90525 -17.80050 -17.53091 -17.06356 -16.88445 -16.31269 -16.10487 -15.81668 -14.79384 -14.70660 -14.43887 -14.32518 -14.11747 -13.94839 -13.83629 -13.66287 -12.93820 -12.71799 -12.48857 -12.22973 -12.15443 -11.98230 -11.49624 -11.15835 -10.92713 -10.81495 -10.62708 -10.13820 -9.92566 -8.29365 -6.45795 -0.74256 -0.09505 1.06563 1.23591 1.44889 1.46429 1.55578 1.57823 2.31639 2.48290 2.51772 2.94774 3.06048 3.20691 3.54499 3.61094 3.65740 3.73283 4.02377 4.04817 4.08418 4.33552 4.77201 4.81518 5.02674 5.11089 5.22726 5.28254 5.42106 5.63039 5.82601 6.36378 6.58593 6.63383 6.74072 6.77923 7.20847 7.36039 8.82702 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.053596 B = 0.002610 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.302411 B =10726.372361 C =11225.650341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.004 3.996 3 Si 0.984 3.016 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.255 1.255 7 C -0.556 4.556 8 H 0.086 0.914 9 C 0.266 3.734 10 N -0.698 5.698 11 C 0.500 3.500 12 O -0.582 6.582 13 C 0.061 3.939 14 O -0.339 6.339 15 C 0.520 3.480 16 O -0.517 6.517 17 C -0.169 4.169 18 C 0.147 3.853 19 N -0.490 5.490 20 C 0.116 3.884 21 C 0.061 3.939 22 O -0.489 6.489 23 C -0.041 4.041 24 H 0.269 0.731 25 H -0.007 1.007 26 H -0.007 1.007 27 H 0.413 0.587 28 H 0.128 0.872 29 H 0.129 0.871 30 H 0.172 0.828 31 H 0.199 0.801 32 H 0.420 0.580 33 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.902 -24.376 -1.797 26.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.196 4.196 3 Si 0.808 3.192 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.179 1.179 7 C -0.594 4.594 8 H 0.104 0.896 9 C 0.144 3.856 10 N -0.350 5.350 11 C 0.285 3.715 12 O -0.462 6.462 13 C -0.015 4.015 14 O -0.254 6.254 15 C 0.365 3.635 16 O -0.407 6.407 17 C -0.173 4.173 18 C -0.010 4.010 19 N -0.200 5.200 20 C -0.042 4.042 21 C 0.014 3.986 22 O -0.302 6.302 23 C -0.067 4.067 24 H 0.078 0.922 25 H 0.011 0.989 26 H 0.011 0.989 27 H 0.249 0.751 28 H 0.146 0.854 29 H 0.147 0.853 30 H 0.189 0.811 31 H 0.215 0.785 32 H 0.280 0.720 33 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 7.343 -24.349 -1.202 25.460 hybrid contribution 1.343 1.229 -0.470 1.880 sum 8.685 -23.120 -1.672 24.754 Atomic orbital electron populations 1.70132 1.08232 1.28608 1.49889 1.26045 0.95769 1.03863 0.93894 0.85159 0.78490 0.77025 0.78562 1.19648 1.21098 1.17916 1.21610 0.94434 0.90397 1.52951 0.89570 1.18632 0.88574 0.83770 0.94644 1.46029 1.11750 1.04692 1.72510 1.20648 0.89283 0.84683 0.76862 1.90693 1.18848 1.85270 1.51396 1.22824 0.92582 0.78536 1.07575 1.86572 1.40712 1.14413 1.83702 1.21110 0.85303 0.84806 0.72320 1.90836 1.15041 1.88044 1.46759 1.19991 0.95242 0.90413 1.11631 1.23363 0.90898 0.96981 0.89747 1.67908 1.40494 0.98405 1.13185 1.24033 0.91141 0.98000 0.91001 1.19215 0.91088 0.86068 1.02268 1.84838 1.75238 1.33989 1.36144 1.22219 1.02461 0.90027 0.91963 0.92222 0.98907 0.98921 0.75068 0.85450 0.85326 0.81087 0.78454 0.71959 0.81942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.27 13.29 21.45 0.28 -54.98 16 2 C 0.00 0.22 5.46 84.65 0.46 0.68 16 3 Si 0.98 41.57 29.54 68.60 2.03 43.60 16 4 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 5 H -0.29 -12.02 7.11 99.48 0.71 -11.31 16 6 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 7 C -0.56 -29.40 9.28 25.60 0.24 -29.16 16 8 H 0.09 4.08 7.60 -2.91 -0.02 4.05 16 9 C 0.27 14.17 5.43 85.63 0.46 14.63 16 10 N -0.70 -28.05 5.55 -466.78 -2.59 -30.64 16 11 C 0.50 19.35 7.91 87.66 0.69 20.04 16 12 O -0.58 -28.45 16.50 15.79 0.26 -28.19 16 13 C 0.06 1.67 5.95 71.24 0.42 2.09 16 14 O -0.34 -9.89 9.03 -49.82 -0.45 -10.34 16 15 C 0.52 13.25 7.91 70.33 0.56 13.81 16 16 O -0.52 -14.14 16.21 19.94 0.32 -13.82 16 17 C -0.17 -3.61 5.89 -20.02 -0.12 -3.72 16 18 C 0.15 3.22 10.78 85.05 0.92 4.14 16 19 N -0.49 -9.87 10.34 -194.36 -2.01 -11.88 16 20 C 0.12 1.60 11.13 84.82 0.94 2.54 16 21 C 0.06 0.79 6.73 22.56 0.15 0.94 16 22 O -0.49 -4.23 13.52 -92.68 -1.25 -5.49 16 23 C -0.04 -0.68 9.67 22.84 0.22 -0.46 16 24 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 25 H -0.01 -0.42 8.14 -2.38 -0.02 -0.44 16 26 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 27 H 0.41 13.21 8.32 -92.71 -0.77 12.44 16 28 H 0.13 2.82 8.14 -2.39 -0.02 2.80 16 29 H 0.13 2.81 8.14 -2.38 -0.02 2.79 16 30 H 0.17 3.98 7.62 -2.91 -0.02 3.95 16 31 H 0.20 1.42 8.06 -2.91 -0.02 1.39 16 32 H 0.42 -0.68 9.06 -74.06 -0.67 -1.35 16 33 H 0.16 2.42 7.73 -2.91 -0.02 2.40 16 Total: -1.00 -76.73 310.68 1.29 -75.44 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -0.26 Total: 10.76 kcal Atomic # 6 Polarization: 20.58 SS G_CDS: 4.95 Total: 25.54 kcal Atomic # 7 Polarization: -93.19 SS G_CDS: -4.31 Total: -97.50 kcal Atomic # 8 Polarization: -56.71 SS G_CDS: -1.12 Total: -57.83 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 2.03 Total: 43.60 kcal Total: -76.73 1.29 -75.44 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732394971.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.185 kcal (2) G-P(sol) polarization free energy of solvation -76.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds