Wall clock time and date at job start Tue Mar 31 2020 01:57:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 O 1.21328 * 119.99833 * 2 1 4 4 C 1.46613 * 119.99983 * 179.97438 * 2 1 3 5 5 C 1.38640 * 126.51196 * 359.97438 * 4 2 1 6 6 N 1.34150 * 108.36208 * 180.02562 * 5 4 2 7 7 H 0.96995 * 125.34520 * 180.02562 * 6 5 4 8 8 C 1.37846 * 109.29846 * 359.97438 * 6 5 4 9 9 C 1.46718 * 125.80745 * 179.97438 * 8 6 5 10 10 O 1.21717 * 119.99679 * 172.40279 * 9 8 6 11 11 N 1.34774 * 120.00109 * 352.40536 * 9 8 6 12 12 C 1.36871 * 119.99913 * 353.45651 * 11 9 8 13 13 H 1.08004 * 119.99973 * 315.68575 * 12 11 9 14 14 C 1.39022 * 120.00119 * 135.68471 * 12 11 9 15 15 N 1.31392 * 120.00020 * 167.95665 * 14 12 11 16 16 Si 1.86803 * 119.99735 * 347.95091 * 14 12 11 17 17 H 1.48502 * 109.46545 * 92.05867 * 16 14 12 18 18 H 1.48501 * 109.47021 * 212.05725 * 16 14 12 19 19 H 1.48502 * 109.47484 * 332.05955 * 16 14 12 20 20 C 1.46500 * 120.00153 * 173.45458 * 11 9 8 21 21 C 1.50704 * 109.47120 * 85.43538 * 20 11 9 22 22 O 1.20829 * 119.99761 * 5.23303 * 21 20 11 23 23 O 1.34220 * 120.00023 * 185.23325 * 21 20 11 24 24 C 1.36356 * 108.38396 * 0.26902 * 8 6 5 25 25 H 1.08997 * 109.47004 * 240.00499 * 1 2 3 26 26 H 1.09002 * 109.46835 * 0.02562 * 1 2 3 27 27 H 1.08997 * 109.46873 * 120.00187 * 1 2 3 28 28 H 1.08006 * 125.81699 * 0.05385 * 5 4 2 29 29 H 0.97003 * 119.99710 * 180.02562 * 15 14 12 30 30 H 1.09002 * 109.47031 * 205.43652 * 20 11 9 31 31 H 1.09004 * 109.46838 * 325.43445 * 20 11 9 32 32 H 0.96701 * 117.00062 * 179.97438 * 23 21 20 33 33 H 1.07999 * 126.51270 * 179.73655 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1137 1.0508 0.0000 4 6 2.2401 -1.2697 0.0006 5 6 1.6876 -2.5412 0.0016 6 7 2.6869 -3.4363 0.0024 7 1 2.5770 -4.4000 0.0029 8 6 3.8942 -2.7711 0.0013 9 6 5.2202 -3.3991 0.0022 10 8 6.2174 -2.7154 -0.1383 11 7 5.3341 -4.7329 0.1586 12 6 4.2281 -5.4846 0.4498 13 1 3.5250 -5.1444 1.1958 14 6 4.0096 -6.6862 -0.2144 15 7 3.0913 -7.5195 0.2200 16 14 5.0215 -7.1158 -1.7247 17 1 6.2162 -7.8966 -1.3142 18 1 4.1980 -7.9252 -2.6585 19 1 5.4549 -5.8673 -2.4019 20 6 6.6417 -5.3780 0.0167 21 6 7.3776 -5.3161 1.3304 22 8 6.8275 -4.8729 2.3106 23 8 8.6440 -5.7532 1.4114 24 6 3.6465 -1.4302 0.0059 25 1 -0.3633 -0.5137 0.8900 26 1 -0.3633 1.0277 -0.0005 27 1 -0.3633 -0.5139 -0.8900 28 1 0.6324 -2.7718 0.0014 29 1 2.9392 -8.3580 -0.2433 30 1 6.5034 -6.4196 -0.2735 31 1 7.2206 -4.8613 -0.7489 32 1 9.0749 -5.6929 2.2751 33 1 4.3833 -0.6407 0.0103 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000736186975.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:57:11 Heat of formation + Delta-G solvation = -102.565251 kcal Electronic energy + Delta-G solvation = -21897.757824 eV Core-core repulsion = 18311.288341 eV Total energy + Delta-G solvation = -3586.469483 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.094 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.98875 -39.83708 -38.57143 -37.96824 -35.72237 -35.17419 -32.46706 -31.31221 -30.02049 -29.22872 -27.47291 -25.35280 -22.67592 -22.13204 -20.88761 -19.51606 -18.74653 -18.18306 -17.73272 -16.90433 -15.88757 -15.82113 -15.38607 -15.07545 -14.78879 -14.77635 -14.27415 -14.17221 -13.92584 -13.21100 -13.07030 -12.88588 -12.53546 -12.42199 -12.07462 -11.99973 -11.91024 -11.73716 -11.38810 -11.12655 -10.76097 -10.41148 -10.08114 -9.69704 -9.39956 -9.16985 -8.54658 -8.27344 -7.77161 -6.93750 -4.71838 1.80365 2.20032 2.71233 2.76741 2.94757 2.96968 3.30265 3.60814 3.69228 3.79716 4.01391 4.16938 4.57414 4.69368 5.28967 5.37139 5.44440 5.53798 5.55200 5.62927 5.73623 5.81730 5.85692 6.13411 6.44136 6.57931 6.81807 6.91837 7.11758 7.35279 7.57598 7.69268 7.98685 8.11231 8.39527 8.45786 8.85087 9.20175 10.12296 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.019065 B = 0.006108 C = 0.005089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.290208 B = 4582.680962 C = 5500.419274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.425 3.575 3 O -0.484 6.484 4 C -0.285 4.285 5 C 0.064 3.936 6 N -0.492 5.492 7 H 0.442 0.558 8 C -0.017 4.017 9 C 0.568 3.432 10 O -0.572 6.572 11 N -0.454 5.454 12 C -0.364 4.364 13 H 0.108 0.892 14 C 0.068 3.932 15 N -0.844 5.844 16 Si 0.875 3.125 17 H -0.264 1.264 18 H -0.277 1.277 19 H -0.252 1.252 20 C 0.109 3.891 21 C 0.465 3.535 22 O -0.496 6.496 23 O -0.526 6.526 24 C -0.078 4.078 25 H 0.089 0.911 26 H 0.076 0.924 27 H 0.088 0.912 28 H 0.174 0.826 29 H 0.284 0.716 30 H 0.109 0.891 31 H 0.111 0.889 32 H 0.401 0.599 33 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.627 1.242 -2.301 3.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C 0.305 3.695 3 O -0.362 6.362 4 C -0.293 4.293 5 C -0.083 4.083 6 N -0.094 5.094 7 H 0.294 0.706 8 C -0.130 4.130 9 C 0.359 3.641 10 O -0.454 6.454 11 N -0.176 5.176 12 C -0.491 4.491 13 H 0.126 0.874 14 C -0.144 4.144 15 N -0.477 5.477 16 Si 0.701 3.299 17 H -0.191 1.191 18 H -0.203 1.203 19 H -0.176 1.176 20 C -0.016 4.016 21 C 0.305 3.695 22 O -0.382 6.382 23 O -0.338 6.338 24 C -0.102 4.102 25 H 0.107 0.893 26 H 0.095 0.905 27 H 0.107 0.893 28 H 0.192 0.808 29 H 0.095 0.905 30 H 0.126 0.874 31 H 0.129 0.871 32 H 0.259 0.741 33 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -2.226 1.781 -2.491 3.786 hybrid contribution 0.520 -1.173 0.115 1.288 sum -1.707 0.608 -2.376 2.988 Atomic orbital electron populations 1.22212 0.94732 1.04246 1.04139 1.21517 0.90627 0.86986 0.70365 1.90509 1.72339 1.34315 1.39001 1.20119 0.94274 0.93428 1.21515 1.22615 0.94306 0.88789 1.02552 1.43538 1.04713 1.11743 1.49402 0.70558 1.19897 0.85690 0.91479 1.15924 1.17276 0.86943 0.81751 0.78125 1.90726 1.37385 1.63018 1.54229 1.43196 1.04839 1.05727 1.63853 1.19108 1.01806 1.05026 1.23186 0.87443 1.25613 0.96096 0.95336 0.97342 1.69665 1.31013 1.08968 1.38039 0.86895 0.80178 0.80164 0.82671 1.19057 1.20301 1.17576 1.21382 0.86798 1.01055 0.92382 1.24359 0.79228 0.73461 0.92491 1.90684 1.67505 1.41558 1.38420 1.84558 1.29039 1.78842 1.41341 1.21058 0.94610 0.93880 1.00692 0.89269 0.90474 0.89311 0.80839 0.90484 0.87408 0.87082 0.74126 0.83588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.01 9.76 36.01 0.35 -1.66 16 2 C 0.42 6.62 7.24 -30.93 -0.22 6.40 16 3 O -0.48 -9.30 17.65 5.52 0.10 -9.20 16 4 C -0.29 -4.85 6.11 -105.11 -0.64 -5.49 16 5 C 0.06 0.95 11.45 -16.39 -0.19 0.76 16 6 N -0.49 -8.98 5.16 -9.23 -0.05 -9.03 16 7 H 0.44 8.32 5.46 -40.82 -0.22 8.10 16 8 C -0.02 -0.36 6.66 -82.41 -0.55 -0.91 16 9 C 0.57 13.37 7.52 -12.84 -0.10 13.27 16 10 O -0.57 -14.41 16.60 5.17 0.09 -14.33 16 11 N -0.45 -10.38 1.61 -117.56 -0.19 -10.57 16 12 C -0.36 -8.44 6.94 -15.01 -0.10 -8.54 16 13 H 0.11 2.64 6.57 -52.48 -0.34 2.30 16 14 C 0.07 1.53 5.40 -17.45 -0.09 1.44 16 15 N -0.84 -19.91 13.96 55.50 0.77 -19.13 16 16 Si 0.88 17.37 24.79 -169.99 -4.21 13.16 16 17 H -0.26 -5.02 6.70 56.52 0.38 -4.64 16 18 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 19 H -0.25 -5.04 7.08 56.52 0.40 -4.64 16 20 C 0.11 2.25 4.42 -5.19 -0.02 2.23 16 21 C 0.46 9.52 8.36 36.01 0.30 9.82 16 22 O -0.50 -11.82 17.17 -18.75 -0.32 -12.14 16 23 O -0.53 -8.34 13.42 -39.23 -0.53 -8.87 16 24 C -0.08 -1.57 10.38 -39.00 -0.40 -1.97 16 25 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.08 0.76 8.12 -51.93 -0.42 0.34 16 27 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.17 1.76 8.00 -52.48 -0.42 1.34 16 29 H 0.28 6.25 8.31 -40.82 -0.34 5.91 16 30 H 0.11 2.15 3.59 -51.93 -0.19 1.96 16 31 H 0.11 2.13 7.67 -51.93 -0.40 1.74 16 32 H 0.40 4.43 9.10 45.56 0.41 4.85 16 33 H 0.15 3.01 8.06 -52.49 -0.42 2.59 16 LS Contribution 296.64 15.07 4.47 4.47 Total: -1.00 -31.34 296.64 -3.55 -34.89 By element: Atomic # 1 Polarization: 17.41 SS G_CDS: -2.01 Total: 15.41 kcal Atomic # 6 Polarization: 17.02 SS G_CDS: -1.67 Total: 15.34 kcal Atomic # 7 Polarization: -39.27 SS G_CDS: 0.54 Total: -38.73 kcal Atomic # 8 Polarization: -43.87 SS G_CDS: -0.67 Total: -44.54 kcal Atomic # 14 Polarization: 17.37 SS G_CDS: -4.21 Total: 13.16 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -31.34 -3.55 -34.89 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736186975.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.674 kcal (2) G-P(sol) polarization free energy of solvation -31.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds