Wall clock time and date at job start Tue Mar 31 2020 01:57:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 O 1.21328 * 119.99833 * 2 1 4 4 C 1.46613 * 119.99983 * 179.97438 * 2 1 3 5 5 C 1.38640 * 126.51196 * 359.97438 * 4 2 1 6 6 N 1.34150 * 108.36208 * 180.02562 * 5 4 2 7 7 H 0.96995 * 125.34520 * 180.02562 * 6 5 4 8 8 C 1.37846 * 109.29846 * 359.97438 * 6 5 4 9 9 C 1.46718 * 125.80745 * 179.97438 * 8 6 5 10 10 O 1.21717 * 119.99679 * 172.40279 * 9 8 6 11 11 N 1.34774 * 120.00109 * 352.40536 * 9 8 6 12 12 C 1.36871 * 119.99913 * 353.45651 * 11 9 8 13 13 H 1.08004 * 119.99973 * 315.68575 * 12 11 9 14 14 C 1.39022 * 120.00119 * 135.68471 * 12 11 9 15 15 N 1.31392 * 120.00020 * 167.95665 * 14 12 11 16 16 Si 1.86803 * 119.99735 * 347.95091 * 14 12 11 17 17 H 1.48502 * 109.46545 * 92.05867 * 16 14 12 18 18 H 1.48501 * 109.47021 * 212.05725 * 16 14 12 19 19 H 1.48502 * 109.47484 * 332.05955 * 16 14 12 20 20 C 1.46500 * 120.00153 * 173.45458 * 11 9 8 21 21 C 1.50704 * 109.47120 * 85.43538 * 20 11 9 22 22 O 1.20829 * 119.99761 * 5.23303 * 21 20 11 23 23 O 1.34220 * 120.00023 * 185.23325 * 21 20 11 24 24 C 1.36356 * 108.38396 * 0.26902 * 8 6 5 25 25 H 1.08997 * 109.47004 * 240.00499 * 1 2 3 26 26 H 1.09002 * 109.46835 * 0.02562 * 1 2 3 27 27 H 1.08997 * 109.46873 * 120.00187 * 1 2 3 28 28 H 1.08006 * 125.81699 * 0.05385 * 5 4 2 29 29 H 0.97003 * 119.99710 * 180.02562 * 15 14 12 30 30 H 1.09002 * 109.47031 * 205.43652 * 20 11 9 31 31 H 1.09004 * 109.46838 * 325.43445 * 20 11 9 32 32 H 0.96701 * 117.00062 * 179.97438 * 23 21 20 33 33 H 1.07999 * 126.51270 * 179.73655 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1137 1.0508 0.0000 4 6 2.2401 -1.2697 0.0006 5 6 1.6876 -2.5412 0.0016 6 7 2.6869 -3.4363 0.0024 7 1 2.5770 -4.4000 0.0029 8 6 3.8942 -2.7711 0.0013 9 6 5.2202 -3.3991 0.0022 10 8 6.2174 -2.7154 -0.1383 11 7 5.3341 -4.7329 0.1586 12 6 4.2281 -5.4846 0.4498 13 1 3.5250 -5.1444 1.1958 14 6 4.0096 -6.6862 -0.2144 15 7 3.0913 -7.5195 0.2200 16 14 5.0215 -7.1158 -1.7247 17 1 6.2162 -7.8966 -1.3142 18 1 4.1980 -7.9252 -2.6585 19 1 5.4549 -5.8673 -2.4019 20 6 6.6417 -5.3780 0.0167 21 6 7.3776 -5.3161 1.3304 22 8 6.8275 -4.8729 2.3106 23 8 8.6440 -5.7532 1.4114 24 6 3.6465 -1.4302 0.0059 25 1 -0.3633 -0.5137 0.8900 26 1 -0.3633 1.0277 -0.0005 27 1 -0.3633 -0.5139 -0.8900 28 1 0.6324 -2.7718 0.0014 29 1 2.9392 -8.3580 -0.2433 30 1 6.5034 -6.4196 -0.2735 31 1 7.2206 -4.8613 -0.7489 32 1 9.0749 -5.6929 2.2751 33 1 4.3833 -0.6407 0.0103 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000736186975.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:57:10 Heat of formation + Delta-G solvation = -125.714890 kcal Electronic energy + Delta-G solvation = -21898.761668 eV Core-core repulsion = 18311.288341 eV Total energy + Delta-G solvation = -3587.473327 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.094 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.47914 -41.42513 -40.09536 -39.42672 -37.34265 -36.86690 -34.22900 -32.62931 -31.41103 -30.65274 -28.86998 -27.09657 -24.11197 -23.51655 -22.45757 -21.08286 -20.37711 -19.56826 -19.30430 -18.47091 -17.44672 -17.37472 -17.08103 -16.64257 -16.19855 -16.16456 -15.64180 -15.50032 -15.48475 -14.74194 -14.61773 -14.43258 -14.10658 -14.06048 -13.66120 -13.12814 -13.05790 -12.92329 -12.82227 -12.66015 -12.40801 -12.03994 -11.76770 -11.40883 -10.94393 -10.64245 -10.12829 -9.94433 -9.21642 -8.67754 -6.50561 0.54944 0.60950 1.11451 1.17776 1.34096 1.41502 1.78817 2.05924 2.22500 2.32841 2.43260 2.56847 2.91757 3.49579 3.82449 4.01007 4.14634 4.18408 4.25141 4.32785 4.46857 4.74072 4.86719 4.93563 5.07893 5.11356 5.43100 5.53061 5.66824 5.77241 5.88017 5.94832 6.61851 6.71125 6.86243 6.93624 7.08927 7.44736 8.40770 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.019065 B = 0.006108 C = 0.005089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.290208 B = 4582.680962 C = 5500.419274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.424 3.576 3 O -0.532 6.532 4 C -0.301 4.301 5 C 0.106 3.894 6 N -0.497 5.497 7 H 0.441 0.559 8 C -0.053 4.053 9 C 0.555 3.445 10 O -0.604 6.604 11 N -0.457 5.457 12 C -0.368 4.368 13 H 0.087 0.913 14 C 0.045 3.955 15 N -0.870 5.870 16 Si 0.916 3.084 17 H -0.247 1.247 18 H -0.270 1.270 19 H -0.258 1.258 20 C 0.097 3.903 21 C 0.471 3.529 22 O -0.538 6.538 23 O -0.507 6.507 24 C -0.093 4.093 25 H 0.116 0.884 26 H 0.081 0.919 27 H 0.119 0.881 28 H 0.235 0.765 29 H 0.291 0.709 30 H 0.119 0.881 31 H 0.124 0.876 32 H 0.425 0.575 33 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.230 0.252 -2.997 5.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.308 3.692 3 O -0.413 6.413 4 C -0.308 4.308 5 C -0.040 4.040 6 N -0.098 5.098 7 H 0.293 0.707 8 C -0.165 4.165 9 C 0.347 3.653 10 O -0.489 6.489 11 N -0.178 5.178 12 C -0.495 4.495 13 H 0.104 0.896 14 C -0.165 4.165 15 N -0.503 5.503 16 Si 0.739 3.261 17 H -0.172 1.172 18 H -0.195 1.195 19 H -0.181 1.181 20 C -0.028 4.028 21 C 0.313 3.687 22 O -0.427 6.427 23 O -0.320 6.320 24 C -0.118 4.118 25 H 0.135 0.865 26 H 0.100 0.900 27 H 0.137 0.863 28 H 0.251 0.749 29 H 0.101 0.899 30 H 0.136 0.864 31 H 0.142 0.858 32 H 0.287 0.713 33 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -3.805 0.750 -3.174 5.011 hybrid contribution 1.023 -0.862 0.380 1.390 sum -2.782 -0.112 -2.795 3.945 Atomic orbital electron populations 1.22216 0.89580 1.05614 1.06730 1.22262 0.93176 0.85369 0.68416 1.90502 1.73863 1.35575 1.41370 1.20454 0.92904 0.95455 1.22034 1.23500 0.95955 0.86939 0.97643 1.43426 1.04529 1.11926 1.49893 0.70746 1.19693 0.85973 0.91894 1.18906 1.17716 0.87705 0.82024 0.77823 1.90673 1.38582 1.63624 1.55982 1.43233 1.05560 1.05576 1.63454 1.18943 1.02237 1.05347 1.22961 0.89550 1.26001 0.96768 0.94789 0.98892 1.69705 1.32045 1.09522 1.39063 0.86247 0.79841 0.79934 0.80046 1.17234 1.19531 1.18147 1.21563 0.86419 1.01630 0.93144 1.24202 0.80190 0.72650 0.91706 1.90674 1.68796 1.43612 1.39624 1.84478 1.26816 1.77535 1.43195 1.21136 0.96451 0.93247 1.01012 0.86522 0.89982 0.86303 0.74860 0.89860 0.86368 0.85830 0.71297 0.85600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.99 9.76 71.24 0.70 -2.30 16 2 C 0.42 12.52 7.24 27.88 0.20 12.72 16 3 O -0.53 -20.56 17.65 -3.18 -0.06 -20.62 16 4 C -0.30 -9.88 6.11 -20.18 -0.12 -10.00 16 5 C 0.11 2.84 11.45 84.43 0.97 3.81 16 6 N -0.50 -17.75 5.16 -183.12 -0.94 -18.70 16 7 H 0.44 16.34 5.46 -92.71 -0.51 15.84 16 8 C -0.05 -2.29 6.66 39.98 0.27 -2.02 16 9 C 0.55 27.00 7.52 86.46 0.65 27.65 16 10 O -0.60 -31.75 16.60 -4.40 -0.07 -31.83 16 11 N -0.46 -21.16 1.61 -644.07 -1.04 -22.20 16 12 C -0.37 -17.16 6.94 84.09 0.58 -16.58 16 13 H 0.09 4.34 6.57 -2.91 -0.02 4.32 16 14 C 0.05 2.00 5.40 84.95 0.46 2.46 16 15 N -0.87 -40.31 13.96 21.68 0.30 -40.00 16 16 Si 0.92 34.36 24.79 68.60 1.70 36.06 16 17 H -0.25 -8.57 6.70 99.48 0.67 -7.90 16 18 H -0.27 -9.80 7.11 99.48 0.71 -9.09 16 19 H -0.26 -9.87 7.08 99.48 0.70 -9.17 16 20 C 0.10 3.98 4.42 85.63 0.38 4.36 16 21 C 0.47 19.11 8.36 71.24 0.60 19.70 16 22 O -0.54 -25.97 17.17 21.95 0.38 -25.59 16 23 O -0.51 -15.15 13.42 -51.32 -0.69 -15.84 16 24 C -0.09 -3.87 10.38 22.65 0.24 -3.64 16 25 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.08 1.31 8.12 -2.39 -0.02 1.29 16 27 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.24 3.28 8.00 -2.91 -0.02 3.26 16 29 H 0.29 12.43 8.31 -92.71 -0.77 11.66 16 30 H 0.12 4.54 3.59 -2.39 -0.01 4.53 16 31 H 0.12 4.71 7.67 -2.38 -0.02 4.69 16 32 H 0.43 8.48 9.10 -74.06 -0.67 7.81 16 33 H 0.13 5.61 8.06 -2.91 -0.02 5.59 16 Total: -1.00 -71.62 296.64 4.46 -67.16 By element: Atomic # 1 Polarization: 35.42 SS G_CDS: -0.02 Total: 35.40 kcal Atomic # 6 Polarization: 31.26 SS G_CDS: 4.91 Total: 36.16 kcal Atomic # 7 Polarization: -79.22 SS G_CDS: -1.68 Total: -80.90 kcal Atomic # 8 Polarization: -93.44 SS G_CDS: -0.44 Total: -93.88 kcal Atomic # 14 Polarization: 34.36 SS G_CDS: 1.70 Total: 36.06 kcal Total: -71.62 4.46 -67.16 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736186975.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.557 kcal (2) G-P(sol) polarization free energy of solvation -71.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds