Wall clock time and date at job start Tue Mar 31 2020 01:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86803 * 119.99772 * 2 1 4 4 H 1.48509 * 109.46967 * 240.00097 * 3 2 1 5 5 H 1.48499 * 109.47312 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47191 * 120.00038 * 3 2 1 7 7 C 1.38951 * 120.00366 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00401 * 201.12685 * 7 2 1 9 9 N 1.37097 * 119.99592 * 21.12903 * 7 2 1 10 10 C 1.46500 * 120.00431 * 16.26036 * 9 7 2 11 11 C 1.50698 * 109.47011 * 264.14725 * 10 9 7 12 12 O 1.20820 * 120.00656 * 359.97438 * 11 10 9 13 13 O 1.34231 * 119.99782 * 179.97438 * 11 10 9 14 14 C 1.34783 * 119.99943 * 196.26431 * 9 7 2 15 15 O 1.21290 * 119.99648 * 359.97438 * 14 9 7 16 16 C 1.50693 * 120.00077 * 180.02562 * 14 9 7 17 17 N 1.46502 * 109.47025 * 179.97438 * 16 14 9 18 18 C 1.35757 * 119.62531 * 89.99917 * 17 16 14 19 19 C 1.35351 * 120.70023 * 180.27815 * 18 17 16 20 20 C 1.40200 * 119.94764 * 359.43064 * 19 18 17 21 21 C 1.36397 * 119.26480 * 0.58088 * 20 19 18 22 22 C 1.34664 * 119.61917 * 270.01618 * 17 16 14 23 23 O 1.22057 * 119.98947 * 0.02562 * 22 17 16 24 24 H 0.96998 * 120.00016 * 0.02562 * 1 2 3 25 25 H 1.09006 * 109.47039 * 24.14512 * 10 9 7 26 26 H 1.08991 * 109.47178 * 144.14405 * 10 9 7 27 27 H 0.96703 * 117.00275 * 180.02562 * 13 11 10 28 28 H 1.09000 * 109.47313 * 59.99763 * 16 14 9 29 29 H 1.09003 * 109.47216 * 299.99605 * 16 14 9 30 30 H 1.07999 * 119.64998 * 0.02562 * 18 17 16 31 31 H 1.07998 * 120.02622 * 179.69922 * 19 18 17 32 32 H 1.08003 * 120.36532 * 180.32112 * 20 19 18 33 33 H 1.07998 * 120.34716 * 179.73284 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1019 1.6965 -1.2126 5 1 1.2831 2.7465 -0.0006 6 1 3.1018 1.6965 1.2124 7 6 2.0090 -1.2033 0.0005 8 1 3.0345 -1.2346 0.3376 9 7 1.3926 -2.3509 -0.4270 10 6 0.1548 -2.2709 -1.2065 11 6 -1.0289 -2.4276 -0.2871 12 8 -0.8564 -2.5899 0.8976 13 8 -2.2750 -2.3867 -0.7845 14 6 1.9254 -3.5528 -0.1299 15 8 2.9504 -3.6190 0.5152 16 6 1.2482 -4.8141 -0.6003 17 7 2.0179 -5.9776 -0.1528 18 6 1.7403 -6.5440 1.0493 19 6 2.4414 -7.6160 1.4866 20 6 3.4587 -8.1595 0.6894 21 6 3.7365 -7.5888 -0.5179 22 6 2.9931 -6.4727 -0.9386 23 8 3.2315 -5.9520 -2.0164 24 1 -0.4850 0.8400 -0.0004 25 1 0.1017 -1.3032 -1.7056 26 1 0.1432 -3.0655 -1.9524 27 1 -3.0023 -2.4916 -0.1558 28 1 1.1927 -4.8125 -1.6889 29 1 0.2415 -4.8626 -0.1852 30 1 0.9543 -6.1324 1.6650 31 1 2.2146 -8.0550 2.4469 32 1 4.0189 -9.0180 1.0294 33 1 4.5193 -7.9905 -1.1441 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739079209.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:09:27 Heat of formation + Delta-G solvation = -127.926103 kcal Electronic energy + Delta-G solvation = -22359.238741 eV Core-core repulsion = 18771.669529 eV Total energy + Delta-G solvation = -3587.569212 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.094 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.44493 -41.16202 -39.89514 -37.92948 -37.12399 -36.43138 -35.40774 -33.85534 -30.86968 -29.97602 -29.34595 -26.62695 -24.80006 -23.80824 -22.89175 -21.20366 -19.14416 -18.83455 -18.53716 -18.32029 -18.25675 -17.41020 -17.23302 -16.87849 -16.27108 -16.03474 -15.88616 -15.58930 -15.33620 -15.05588 -14.43325 -13.87931 -13.60850 -13.53584 -13.36402 -13.17150 -12.91962 -12.74468 -12.71658 -12.46211 -12.19367 -12.14763 -11.59621 -11.37925 -11.04229 -11.01615 -10.52233 -9.97837 -8.95096 -8.51889 -6.04115 -0.05028 0.96053 1.31436 1.39804 1.48599 1.57188 1.61549 1.76055 2.18934 2.45773 2.65783 2.88335 3.03287 3.64753 3.67133 3.77123 3.95801 4.05694 4.21339 4.25565 4.39292 4.53637 4.68987 4.84831 5.04625 5.20311 5.37763 5.38031 5.67280 5.87815 5.92212 6.12331 6.27430 6.97520 7.00963 7.17772 7.38919 7.75632 8.54059 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.021445 B = 0.005925 C = 0.005203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.340813 B = 4724.237812 C = 5380.541139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.007 3.993 3 Si 0.992 3.008 4 H -0.267 1.267 5 H -0.267 1.267 6 H -0.281 1.281 7 C -0.345 4.345 8 H 0.075 0.925 9 N -0.434 5.434 10 C 0.133 3.867 11 C 0.500 3.500 12 O -0.544 6.544 13 O -0.515 6.515 14 C 0.435 3.565 15 O -0.614 6.614 16 C 0.086 3.914 17 N -0.477 5.477 18 C 0.124 3.876 19 C -0.225 4.225 20 C 0.010 3.990 21 C -0.277 4.277 22 C 0.494 3.506 23 O -0.613 6.613 24 H 0.279 0.721 25 H 0.124 0.876 26 H 0.119 0.881 27 H 0.417 0.583 28 H 0.122 0.878 29 H 0.132 0.868 30 H 0.176 0.824 31 H 0.186 0.814 32 H 0.180 0.820 33 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.181 -12.011 0.276 13.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.196 4.196 3 Si 0.815 3.185 4 H -0.192 1.192 5 H -0.191 1.191 6 H -0.207 1.207 7 C -0.472 4.472 8 H 0.093 0.907 9 N -0.152 5.152 10 C 0.007 3.993 11 C 0.342 3.658 12 O -0.433 6.433 13 O -0.327 6.327 14 C 0.224 3.776 15 O -0.500 6.500 16 C -0.040 4.040 17 N -0.185 5.185 18 C -0.002 4.002 19 C -0.247 4.247 20 C -0.012 4.012 21 C -0.299 4.299 22 C 0.300 3.700 23 O -0.501 6.501 24 H 0.089 0.911 25 H 0.142 0.858 26 H 0.136 0.864 27 H 0.277 0.723 28 H 0.140 0.860 29 H 0.149 0.851 30 H 0.193 0.807 31 H 0.204 0.796 32 H 0.197 0.803 33 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -4.372 -11.521 -0.057 12.323 hybrid contribution -0.130 1.276 0.568 1.403 sum -4.502 -10.245 0.510 11.202 Atomic orbital electron populations 1.69825 1.06602 1.29162 1.46771 1.25923 0.96225 1.02137 0.95278 0.85024 0.78016 0.76589 0.78859 1.19158 1.19130 1.20694 1.19542 0.97147 0.85124 1.45418 0.90697 1.43502 1.20773 1.04770 1.46200 1.20942 0.80266 1.06428 0.91632 1.23545 0.84210 0.69861 0.88175 1.90607 1.86440 1.47131 1.19091 1.84451 1.16571 1.85298 1.46415 1.20835 0.87610 0.85477 0.83664 1.90517 1.27643 1.86944 1.44940 1.21740 0.95628 0.83044 1.03572 1.45102 1.30543 1.25064 1.17765 1.22572 0.99266 0.93510 0.84883 1.21177 1.00104 0.99305 1.04091 1.21903 0.92278 0.96625 0.90360 1.22134 1.06226 0.99320 1.02191 1.17834 0.80810 0.86582 0.84790 1.90873 1.69531 1.64822 1.24858 0.91133 0.85799 0.86371 0.72322 0.86001 0.85055 0.80713 0.79650 0.80304 0.82892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -44.47 9.25 21.66 0.20 -44.27 16 2 C 0.01 0.36 4.89 84.93 0.42 0.77 16 3 Si 0.99 41.84 29.60 68.60 2.03 43.87 16 4 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 5 H -0.27 -10.48 7.11 99.48 0.71 -9.78 16 6 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 7 C -0.35 -19.51 9.35 84.04 0.79 -18.72 16 8 H 0.08 4.63 7.36 -2.91 -0.02 4.61 16 9 N -0.43 -22.10 2.18 -639.61 -1.39 -23.49 16 10 C 0.13 5.49 4.97 85.63 0.43 5.92 16 11 C 0.50 19.96 5.87 71.24 0.42 20.38 16 12 O -0.54 -25.82 16.81 21.98 0.37 -25.45 16 13 O -0.51 -15.60 13.42 -51.42 -0.69 -16.29 16 14 C 0.44 21.91 7.48 87.65 0.66 22.57 16 15 O -0.61 -36.22 16.07 -3.06 -0.05 -36.27 16 16 C 0.09 3.27 4.42 85.63 0.38 3.64 16 17 N -0.48 -17.23 2.07 -655.06 -1.36 -18.59 16 18 C 0.12 3.41 10.28 83.42 0.86 4.27 16 19 C -0.22 -4.58 10.01 22.08 0.22 -4.36 16 20 C 0.01 0.20 10.10 22.32 0.23 0.43 16 21 C -0.28 -8.28 9.99 22.40 0.22 -8.06 16 22 C 0.49 19.66 7.40 84.82 0.63 20.29 16 23 O -0.61 -29.58 16.64 -5.50 -0.09 -29.67 16 24 H 0.28 13.20 8.31 -92.71 -0.77 12.43 16 25 H 0.12 5.38 6.34 -2.38 -0.02 5.37 16 26 H 0.12 3.86 6.68 -2.39 -0.02 3.85 16 27 H 0.42 8.89 9.10 -74.06 -0.67 8.22 16 28 H 0.12 4.42 6.66 -2.39 -0.02 4.41 16 29 H 0.13 4.15 7.39 -2.39 -0.02 4.14 16 30 H 0.18 4.04 8.04 -2.91 -0.02 4.01 16 31 H 0.19 2.18 8.06 -2.91 -0.02 2.15 16 32 H 0.18 1.98 8.06 -2.91 -0.02 1.95 16 33 H 0.15 4.11 8.06 -2.91 -0.02 4.09 16 Total: -1.00 -84.16 296.20 4.75 -79.41 By element: Atomic # 1 Polarization: 23.12 SS G_CDS: 0.50 Total: 23.61 kcal Atomic # 6 Polarization: 41.90 SS G_CDS: 5.24 Total: 47.13 kcal Atomic # 7 Polarization: -83.80 SS G_CDS: -2.55 Total: -86.35 kcal Atomic # 8 Polarization: -107.21 SS G_CDS: -0.46 Total: -107.67 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 2.03 Total: 43.87 kcal Total: -84.16 4.75 -79.41 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739079209.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.521 kcal (2) G-P(sol) polarization free energy of solvation -84.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds