Wall clock time and date at job start Tue Mar 31 2020 01:16:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31321 * 1 3 3 Si 1.86803 * 119.99527 * 2 1 4 4 H 1.48497 * 109.46897 * 274.66898 * 3 2 1 5 5 H 1.48491 * 109.47139 * 34.66784 * 3 2 1 6 6 H 1.48502 * 109.46712 * 154.67339 * 3 2 1 7 7 C 1.39109 * 120.00280 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99816 * 339.67507 * 7 2 1 9 9 N 1.36781 * 120.00356 * 159.96078 * 7 2 1 10 10 C 1.46508 * 119.99448 * 320.81643 * 9 7 2 11 11 C 1.50697 * 109.47051 * 265.85530 * 10 9 7 12 12 O 1.20833 * 120.00063 * 4.33448 * 11 10 9 13 13 O 1.34224 * 120.00263 * 184.33338 * 11 10 9 14 14 C 1.34774 * 120.00570 * 140.81755 * 9 7 2 15 15 O 1.21549 * 119.99339 * 355.83396 * 14 9 7 16 16 C 1.48162 * 120.00187 * 175.83303 * 14 9 7 17 17 C 1.42329 * 126.94670 * 174.14031 * 16 14 9 18 18 C 1.35286 * 103.92458 * 179.91148 * 17 16 14 19 19 C 1.50691 * 126.65578 * 180.11036 * 18 17 16 20 20 C 1.52999 * 117.50209 * 189.01443 * 19 18 17 21 21 C 1.53001 * 117.49822 * 120.35242 * 19 18 17 22 22 O 1.34034 * 106.68773 * 0.35411 * 18 17 16 23 23 N 1.20907 * 111.86405 * 359.76098 * 22 18 17 24 24 H 0.97001 * 120.00363 * 359.97438 * 1 2 3 25 25 H 1.08996 * 109.47141 * 25.85695 * 10 9 7 26 26 H 1.08994 * 109.46542 * 145.85850 * 10 9 7 27 27 H 0.96697 * 117.00172 * 179.97438 * 13 11 10 28 28 H 1.07996 * 128.04069 * 0.04712 * 17 16 14 29 29 H 1.09004 * 115.55531 * 334.68326 * 19 18 17 30 30 H 1.09008 * 117.49572 * 359.97438 * 20 19 18 31 31 H 1.08995 * 117.50500 * 145.02078 * 20 19 18 32 32 H 1.09002 * 117.49922 * 214.97626 * 21 19 18 33 33 H 1.08997 * 117.50068 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3132 0.0000 0.0000 3 14 2.2471 1.6178 0.0000 4 1 2.3958 2.1035 -1.3954 5 1 1.4973 2.6222 0.7963 6 1 3.5906 1.4138 0.5989 7 6 2.0088 -1.2047 -0.0005 8 1 1.5192 -2.1111 0.3240 9 7 3.3145 -1.2404 -0.4064 10 6 3.7500 -0.4278 -1.5451 11 6 3.6924 -1.2548 -2.8036 12 8 3.2516 -2.3793 -2.7680 13 8 4.1307 -0.7423 -3.9641 14 6 4.2004 -2.0230 0.2409 15 8 3.8573 -2.6385 1.2313 16 6 5.5924 -2.1330 -0.2545 17 6 6.6720 -2.8167 0.3721 18 6 7.7130 -2.6224 -0.4698 19 6 9.1188 -3.1365 -0.2960 20 6 10.1848 -2.6198 -1.2642 21 6 9.6737 -4.0577 -1.3842 22 8 7.2526 -1.8793 -1.4859 23 7 6.0800 -1.6154 -1.3556 24 1 -0.4851 0.8400 0.0004 25 1 3.0931 0.4359 -1.6475 26 1 4.7726 -0.0890 -1.3795 27 1 4.0739 -1.3107 -4.7443 28 1 6.6620 -3.3653 1.3023 29 1 9.4246 -3.3309 0.7321 30 1 9.8691 -1.9083 -2.0273 31 1 11.1919 -2.4746 -0.8734 32 1 10.3449 -4.8579 -1.0721 33 1 9.0219 -4.2923 -2.2257 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739079505.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:16:13 Heat of formation + Delta-G solvation = -5.982677 kcal Electronic energy + Delta-G solvation = -22257.840071 eV Core-core repulsion = 18675.558723 eV Total energy + Delta-G solvation = -3582.281349 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.094 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -44.77493 -39.88074 -38.47058 -37.55473 -35.67441 -34.89909 -33.63268 -32.29839 -31.22400 -28.07923 -26.09906 -24.12402 -23.20833 -22.61606 -21.90452 -21.49084 -18.80584 -17.75893 -17.45967 -17.38981 -17.24580 -16.60024 -16.01180 -15.60728 -15.44035 -14.88746 -14.33411 -13.89626 -13.81496 -13.35245 -12.77844 -12.65888 -12.56599 -12.40713 -12.09404 -11.85301 -11.47035 -11.19859 -11.08261 -11.02211 -10.70897 -10.54457 -10.17695 -10.05326 -9.93640 -9.36150 -9.08129 -8.98820 -8.06516 -6.57926 -4.16944 1.40341 1.96827 2.81440 2.92224 3.05071 3.12127 3.14248 3.35994 3.58790 3.88409 3.97168 4.05330 4.27177 4.47173 4.56916 4.66131 4.88102 5.10551 5.32460 5.35437 5.36482 5.50669 5.60214 5.62047 5.77593 5.81530 5.82612 5.93521 6.13313 6.98256 7.28796 8.02713 8.20398 8.35891 8.47666 8.70109 9.04585 9.45054 10.52521 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.023610 B = 0.005935 C = 0.005497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.656312 B = 4716.764274 C = 5092.912732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.064 3.936 3 Si 0.863 3.137 4 H -0.267 1.267 5 H -0.275 1.275 6 H -0.257 1.257 7 C -0.312 4.312 8 H 0.114 0.886 9 N -0.424 5.424 10 C 0.095 3.905 11 C 0.473 3.527 12 O -0.499 6.499 13 O -0.521 6.521 14 C 0.540 3.460 15 O -0.536 6.536 16 C 0.003 3.997 17 C -0.177 4.177 18 C -0.015 4.015 19 C -0.081 4.081 20 C -0.167 4.167 21 C -0.164 4.164 22 O 0.106 5.894 23 N -0.352 5.352 24 H 0.279 0.721 25 H 0.111 0.889 26 H 0.116 0.884 27 H 0.399 0.601 28 H 0.178 0.822 29 H 0.138 0.862 30 H 0.104 0.896 31 H 0.105 0.895 32 H 0.106 0.894 33 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.581 -1.013 -4.863 19.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C -0.144 4.144 3 Si 0.688 3.312 4 H -0.194 1.194 5 H -0.201 1.201 6 H -0.181 1.181 7 C -0.439 4.439 8 H 0.131 0.869 9 N -0.145 5.145 10 C -0.031 4.031 11 C 0.313 3.687 12 O -0.385 6.385 13 O -0.332 6.332 14 C 0.327 3.673 15 O -0.415 6.415 16 C -0.156 4.156 17 C -0.199 4.199 18 C -0.078 4.078 19 C -0.100 4.100 20 C -0.204 4.204 21 C -0.201 4.201 22 O 0.037 5.963 23 N -0.058 5.058 24 H 0.090 0.910 25 H 0.129 0.871 26 H 0.134 0.866 27 H 0.257 0.743 28 H 0.195 0.805 29 H 0.156 0.844 30 H 0.122 0.878 31 H 0.123 0.877 32 H 0.124 0.876 33 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 17.516 -0.559 -4.928 18.205 hybrid contribution 0.268 0.102 0.046 0.291 sum 17.785 -0.456 -4.882 18.448 Atomic orbital electron populations 1.69678 1.06188 1.28472 1.43592 1.25437 0.95304 0.98345 0.95359 0.87138 0.81667 0.83725 0.78625 1.19410 1.20123 1.18129 1.19105 0.82986 0.97073 1.44762 0.86878 1.43170 1.09281 1.39558 1.22530 1.21708 1.03602 0.94491 0.83310 1.24088 0.73019 0.86742 0.84816 1.90694 1.41792 1.20120 1.85899 1.84549 1.78646 1.50723 1.19310 1.16851 0.81116 0.85155 0.84153 1.90679 1.77532 1.47389 1.25871 1.24058 0.98916 0.99901 0.92738 1.22304 0.89881 1.04550 1.03150 1.23309 0.96602 0.98263 0.89631 1.20379 0.86116 1.05360 0.98106 1.23083 0.98119 0.97542 1.01695 1.23121 1.03097 0.93872 1.00022 1.84711 1.19143 1.52264 1.40219 1.74280 0.92181 1.20059 1.19322 0.91004 0.87121 0.86649 0.74325 0.80475 0.84410 0.87768 0.87702 0.87597 0.88165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.07 13.95 55.50 0.77 -23.30 16 2 C 0.06 1.76 5.31 -17.45 -0.09 1.67 16 3 Si 0.86 19.87 24.99 -169.99 -4.25 15.62 16 4 H -0.27 -5.69 6.68 56.52 0.38 -5.31 16 5 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 6 H -0.26 -5.87 7.11 56.52 0.40 -5.47 16 7 C -0.31 -9.04 9.32 -15.02 -0.14 -9.18 16 8 H 0.11 3.66 7.97 -52.48 -0.42 3.24 16 9 N -0.42 -11.06 1.66 -117.06 -0.19 -11.25 16 10 C 0.09 2.13 4.21 -5.19 -0.02 2.10 16 11 C 0.47 10.18 7.02 36.00 0.25 10.44 16 12 O -0.50 -12.39 17.17 -18.76 -0.32 -12.71 16 13 O -0.52 -8.68 13.42 -39.24 -0.53 -9.21 16 14 C 0.54 13.77 7.58 -12.19 -0.09 13.68 16 15 O -0.54 -15.02 16.87 5.32 0.09 -14.93 16 16 C 0.00 0.06 6.78 -82.55 -0.56 -0.50 16 17 C -0.18 -2.94 10.93 -39.06 -0.43 -3.37 16 18 C -0.01 -0.21 6.93 -35.36 -0.25 -0.45 16 19 C -0.08 -0.74 6.26 -91.78 -0.57 -1.32 16 20 C -0.17 -1.25 10.18 -26.69 -0.27 -1.52 16 21 C -0.16 -1.26 10.24 -26.69 -0.27 -1.54 16 22 O 0.11 1.67 10.96 17.20 0.19 1.86 16 23 N -0.35 -6.70 7.87 33.29 0.26 -6.43 16 24 H 0.28 7.26 8.31 -40.82 -0.34 6.92 16 25 H 0.11 2.48 3.51 -51.93 -0.18 2.30 16 26 H 0.12 2.37 5.77 -51.93 -0.30 2.07 16 27 H 0.40 4.71 9.10 45.56 0.41 5.12 16 28 H 0.18 2.61 8.06 -52.49 -0.42 2.19 16 29 H 0.14 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.10 0.85 8.01 -51.92 -0.42 0.43 16 31 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.11 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 295.84 15.07 4.46 4.46 Total: -1.00 -34.71 295.84 -4.14 -38.85 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -2.17 Total: 7.03 kcal Atomic # 6 Polarization: 12.46 SS G_CDS: -2.45 Total: 10.01 kcal Atomic # 7 Polarization: -41.83 SS G_CDS: 0.84 Total: -40.98 kcal Atomic # 8 Polarization: -34.41 SS G_CDS: -0.57 Total: -34.99 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -4.25 Total: 15.62 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -34.71 -4.14 -38.85 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739079505.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.869 kcal (2) G-P(sol) polarization free energy of solvation -34.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds