Wall clock time and date at job start Tue Mar 31 2020 01:24:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.37413 * 122.44402 * 2 1 4 4 C 1.36752 * 113.28923 * 180.02562 * 3 2 1 5 5 C 1.46394 * 125.46084 * 180.02562 * 4 3 2 6 6 O 1.21621 * 120.00401 * 355.22959 * 5 4 3 7 7 O 1.34895 * 119.99561 * 175.23012 * 5 4 3 8 8 C 1.45202 * 117.00125 * 185.16363 * 7 5 4 9 9 C 1.52999 * 109.47309 * 175.48567 * 8 7 5 10 10 C 1.50695 * 115.55352 * 64.63051 * 9 8 7 11 11 H 1.08000 * 120.00025 * 266.67461 * 10 9 8 12 12 C 1.37879 * 120.00222 * 86.66598 * 10 9 8 13 13 N 1.31513 * 120.00280 * 178.77405 * 12 10 9 14 14 Si 1.86805 * 119.99642 * 358.78672 * 12 10 9 15 15 H 1.48498 * 109.47362 * 90.60875 * 14 12 10 16 16 H 1.48499 * 109.46713 * 210.60783 * 14 12 10 17 17 H 1.48499 * 109.47101 * 330.60538 * 14 12 10 18 18 C 1.53001 * 117.49802 * 278.95983 * 9 8 7 19 19 C 1.52999 * 117.49484 * 210.30034 * 9 8 7 20 20 S 1.75832 * 109.07322 * 0.27304 * 4 3 2 21 21 C 1.33857 * 122.44448 * 180.02562 * 2 1 3 22 22 C 1.50695 * 124.52070 * 359.93255 * 21 2 1 23 23 H 1.08997 * 109.47337 * 89.97106 * 1 2 3 24 24 H 1.08999 * 109.46954 * 209.96783 * 1 2 3 25 25 H 1.08997 * 109.47018 * 329.96742 * 1 2 3 26 26 H 1.07998 * 123.35502 * 0.02562 * 3 2 1 27 27 H 1.09003 * 109.46569 * 295.48569 * 8 7 5 28 28 H 1.08993 * 109.47046 * 55.47947 * 8 7 5 29 29 H 0.97002 * 120.00057 * 180.02562 * 13 12 10 30 30 H 1.09003 * 117.49467 * 0.02562 * 18 9 8 31 31 H 1.08992 * 117.50155 * 145.02080 * 18 9 8 32 32 H 1.09003 * 117.49832 * 214.97453 * 19 9 8 33 33 H 1.08995 * 117.50097 * 359.97438 * 19 9 8 34 34 H 1.08997 * 109.47259 * 90.00522 * 22 21 2 35 35 H 1.09001 * 109.47388 * 210.00638 * 22 21 2 36 36 H 1.09005 * 109.47333 * 330.00416 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2442 1.1597 0.0000 4 6 3.5943 0.9421 -0.0006 5 6 4.6225 1.9842 -0.0002 6 8 4.3025 3.1543 -0.0869 7 8 5.9250 1.6465 0.0964 8 6 6.8814 2.7334 0.2067 9 6 8.2837 2.1593 0.4184 10 6 8.8334 1.3477 -0.7262 11 1 8.7040 0.2755 -0.7390 12 6 9.5014 1.9738 -1.7571 13 7 10.0022 1.2631 -2.7438 14 14 9.6956 3.8317 -1.7519 15 1 10.9585 4.1956 -1.0607 16 1 9.7357 4.3290 -3.1506 17 1 8.5467 4.4475 -1.0404 18 6 8.6642 1.7288 1.8364 19 6 9.2741 2.9957 1.2311 20 16 3.8972 -0.7899 -0.0090 21 6 2.2252 -1.1296 -0.0005 22 6 1.6355 -2.5164 0.0003 23 1 -0.3634 0.0005 -1.0276 24 1 -0.3633 -0.8903 0.5133 25 1 -0.3633 0.8897 0.5143 26 1 1.8015 2.1447 0.0004 27 1 6.8655 3.3256 -0.7083 28 1 6.6161 3.3661 1.0536 29 1 10.4725 1.7036 -3.4689 30 1 7.9153 1.8543 2.6184 31 1 9.3124 0.8589 1.9415 32 1 10.3234 2.9585 0.9382 33 1 8.9268 3.9550 1.6146 34 1 1.4924 -2.8510 -1.0271 35 1 2.3128 -3.1990 0.5137 36 1 0.6747 -2.5025 0.5151 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000744276028.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:24:52 Heat of formation + Delta-G solvation = -35.068019 kcal Electronic energy + Delta-G solvation = -19163.503268 eV Core-core repulsion = 16126.253899 eV Total energy + Delta-G solvation = -3037.249369 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.092 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.87624 -38.51642 -37.06045 -35.38850 -32.40289 -32.10471 -29.81391 -27.73283 -26.11845 -25.14710 -23.56736 -21.72462 -20.71269 -19.19528 -18.49574 -18.04650 -16.75264 -16.02659 -15.88773 -15.76527 -14.86732 -14.56518 -14.25501 -13.83405 -13.42875 -13.08284 -13.01777 -12.66563 -12.61855 -12.49776 -12.25782 -11.94452 -11.77932 -11.72726 -11.15638 -10.90946 -10.72558 -10.57924 -10.33691 -10.13013 -10.01591 -9.65329 -9.05203 -8.67004 -8.60000 -8.59475 -8.38823 -6.12155 -4.15061 0.46571 1.51234 1.98612 2.25558 3.07660 3.19459 3.27119 3.37295 3.40407 4.39690 4.63997 4.77486 4.95337 5.02541 5.13414 5.22077 5.26147 5.31063 5.44902 5.50685 5.63886 5.66216 5.78412 5.84663 5.95267 5.97066 6.11154 6.20247 6.31055 6.38042 6.40668 6.65507 6.85836 7.05485 7.07166 7.68216 8.17837 8.49420 8.92595 9.49989 10.99672 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.025595 B = 0.004507 C = 0.004360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.703215 B = 6211.750678 C = 6420.940154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.131 4.131 3 C -0.050 4.050 4 C -0.252 4.252 5 C 0.531 3.469 6 O -0.513 6.513 7 O -0.327 6.327 8 C 0.110 3.890 9 C -0.006 4.006 10 C -0.481 4.481 11 H 0.082 0.918 12 C 0.077 3.923 13 N -0.895 5.895 14 Si 0.875 3.125 15 H -0.276 1.276 16 H -0.291 1.291 17 H -0.261 1.261 18 C -0.173 4.173 19 C -0.189 4.189 20 S 0.269 5.731 21 C -0.215 4.215 22 C -0.084 4.084 23 H 0.068 0.932 24 H 0.066 0.934 25 H 0.065 0.935 26 H 0.151 0.849 27 H 0.070 0.930 28 H 0.048 0.952 29 H 0.265 0.735 30 H 0.073 0.927 31 H 0.091 0.909 32 H 0.095 0.905 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.635 -4.605 6.836 18.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.144 4.144 3 C -0.083 4.083 4 C -0.371 4.371 5 C 0.374 3.626 6 O -0.405 6.405 7 O -0.242 6.242 8 C 0.036 3.964 9 C -0.007 4.007 10 C -0.518 4.518 11 H 0.100 0.900 12 C -0.125 4.125 13 N -0.532 5.532 14 Si 0.703 3.297 15 H -0.201 1.201 16 H -0.218 1.218 17 H -0.186 1.186 18 C -0.210 4.210 19 C -0.227 4.227 20 S 0.540 5.460 21 C -0.335 4.335 22 C -0.142 4.142 23 H 0.087 0.913 24 H 0.085 0.915 25 H 0.084 0.916 26 H 0.169 0.831 27 H 0.088 0.912 28 H 0.066 0.934 29 H 0.075 0.925 30 H 0.092 0.908 31 H 0.109 0.891 32 H 0.113 0.887 33 H 0.093 0.907 34 H 0.096 0.904 35 H 0.089 0.911 36 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -15.203 -5.176 6.604 17.365 hybrid contribution -1.050 2.191 -0.190 2.437 sum -16.252 -2.984 6.414 17.725 Atomic orbital electron populations 1.20482 0.89623 1.02597 1.02214 1.18549 0.97682 0.91105 1.07022 1.20552 0.90485 0.99944 0.97327 1.23619 0.95999 0.97456 1.20040 1.19709 0.82761 0.86786 0.73295 1.90828 1.83130 1.19594 1.46979 1.86647 1.14682 1.40733 1.82133 1.23107 0.86672 0.86056 1.00542 1.19332 0.89147 0.99522 0.92737 1.20208 1.34535 0.94791 1.02283 0.90037 1.24981 0.94568 0.97983 0.94982 1.69880 1.36715 1.35804 1.10821 0.86927 0.79377 0.86415 0.76994 1.20140 1.21804 1.18557 1.22829 1.03171 0.98000 0.96991 1.23008 0.99506 0.94245 1.05911 1.83625 1.00119 0.96932 1.65278 1.24341 1.00158 1.00316 1.08702 1.20383 1.00971 0.89853 1.03003 0.91323 0.91513 0.91556 0.83121 0.91221 0.93400 0.92492 0.90813 0.89062 0.88692 0.90710 0.90420 0.91062 0.90386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.74 9.84 36.01 0.35 -0.39 16 2 C -0.13 -1.52 5.78 -106.46 -0.62 -2.13 16 3 C -0.05 -0.69 9.80 -40.42 -0.40 -1.09 16 4 C -0.25 -4.18 6.45 -36.84 -0.24 -4.42 16 5 C 0.53 10.71 7.92 34.01 0.27 10.98 16 6 O -0.51 -11.19 16.63 -19.36 -0.32 -11.51 16 7 O -0.33 -7.21 10.01 -41.03 -0.41 -7.63 16 8 C 0.11 2.48 4.95 37.16 0.18 2.67 16 9 C -0.01 -0.15 1.06 -155.66 -0.17 -0.32 16 10 C -0.48 -13.41 9.35 -34.44 -0.32 -13.73 16 11 H 0.08 2.48 8.06 -52.49 -0.42 2.06 16 12 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 13 N -0.90 -27.08 13.96 55.43 0.77 -26.30 16 14 Si 0.88 21.64 24.88 -169.99 -4.23 17.41 16 15 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 16 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 17 H -0.26 -6.18 5.75 56.52 0.32 -5.85 16 18 C -0.17 -3.51 9.96 -26.69 -0.27 -3.77 16 19 C -0.19 -3.98 7.62 -26.69 -0.20 -4.18 16 20 S 0.27 3.79 22.87 -107.50 -2.46 1.33 16 21 C -0.22 -2.45 6.28 -35.85 -0.23 -2.67 16 22 C -0.08 -0.66 9.98 36.00 0.36 -0.30 16 23 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 24 H 0.07 0.45 6.54 -51.93 -0.34 0.11 16 25 H 0.07 0.50 8.13 -51.93 -0.42 0.07 16 26 H 0.15 1.96 8.06 -52.49 -0.42 1.54 16 27 H 0.07 1.67 6.62 -51.93 -0.34 1.33 16 28 H 0.05 0.99 8.06 -51.93 -0.42 0.57 16 29 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 30 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 31 H 0.09 1.84 8.14 -51.93 -0.42 1.42 16 32 H 0.09 2.05 7.29 -51.93 -0.38 1.68 16 33 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 34 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.08 0.49 6.57 -51.93 -0.34 0.15 16 LS Contribution 319.24 15.07 4.81 4.81 Total: -1.00 -31.67 319.24 -8.03 -39.70 By element: Atomic # 1 Polarization: 4.26 SS G_CDS: -4.84 Total: -0.57 kcal Atomic # 6 Polarization: -15.88 SS G_CDS: -1.36 Total: -17.24 kcal Atomic # 7 Polarization: -27.08 SS G_CDS: 0.77 Total: -26.30 kcal Atomic # 8 Polarization: -18.40 SS G_CDS: -0.73 Total: -19.13 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.23 Total: 17.41 kcal Atomic # 16 Polarization: 3.79 SS G_CDS: -2.46 Total: 1.33 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.67 -8.03 -39.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744276028.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.632 kcal (2) G-P(sol) polarization free energy of solvation -31.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds