Wall clock time and date at job start Tue Mar 31 2020 01:28:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50700 * 109.46995 * 2 1 4 4 C 1.37414 * 123.35335 * 264.70205 * 3 2 1 5 5 C 1.33862 * 115.10760 * 179.81043 * 4 3 2 6 6 S 1.70614 * 110.96457 * 0.44608 * 5 4 3 7 7 C 1.36753 * 123.35789 * 84.99963 * 3 2 1 8 8 C 1.46391 * 125.46084 * 359.95913 * 7 3 2 9 9 O 1.21627 * 120.00136 * 356.31192 * 8 7 3 10 10 O 1.34892 * 119.99783 * 176.31298 * 8 7 3 11 11 C 1.45208 * 117.00041 * 184.58167 * 10 8 7 12 12 C 1.52994 * 109.47172 * 184.13590 * 11 10 8 13 13 C 1.50705 * 115.54883 * 306.70995 * 12 11 10 14 14 H 1.07997 * 120.00055 * 144.81708 * 13 12 11 15 15 C 1.37871 * 119.99935 * 324.81470 * 13 12 11 16 16 N 1.31515 * 120.00541 * 349.41825 * 15 13 12 17 17 Si 1.86808 * 119.99966 * 169.42459 * 15 13 12 18 18 H 1.48502 * 109.47342 * 89.99622 * 17 15 13 19 19 H 1.48496 * 109.47072 * 209.99888 * 17 15 13 20 20 H 1.48503 * 109.47058 * 329.99863 * 17 15 13 21 21 C 1.52996 * 117.50191 * 161.04320 * 12 11 10 22 22 C 1.52998 * 117.50278 * 92.38026 * 12 11 10 23 23 H 1.08997 * 109.47060 * 299.99982 * 1 2 3 24 24 H 1.08995 * 109.47321 * 60.00231 * 1 2 3 25 25 H 1.08998 * 109.47045 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47314 * 119.99908 * 2 1 3 27 27 H 1.08997 * 109.47060 * 240.00018 * 2 1 3 28 28 H 1.07996 * 122.44853 * 0.02562 * 4 3 2 29 29 H 1.07998 * 124.51375 * 180.17916 * 5 4 3 30 30 H 1.08993 * 109.47056 * 304.13385 * 11 10 8 31 31 H 1.09000 * 109.47091 * 64.13299 * 11 10 8 32 32 H 0.96999 * 120.00675 * 185.03793 * 16 15 13 33 33 H 1.09006 * 117.49578 * 359.97438 * 21 12 11 34 34 H 1.08995 * 117.50381 * 145.01704 * 21 12 11 35 35 H 1.08996 * 117.50119 * 214.97749 * 22 12 11 36 36 H 1.09002 * 117.49453 * 359.97438 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3841 2.0978 -1.1429 5 6 2.8052 3.3541 -0.9521 6 16 2.7933 3.7567 0.7058 7 6 2.1891 2.1630 1.1379 8 6 1.8998 1.7042 2.4976 9 8 1.4202 0.6012 2.6782 10 8 2.1653 2.5048 3.5503 11 6 1.9492 1.9473 4.8736 12 6 2.2020 3.0258 5.9289 13 6 3.5340 3.7248 5.8377 14 1 3.6118 4.7732 6.0852 15 6 4.6534 3.0259 5.4385 16 7 4.6094 1.7153 5.3382 17 14 6.2328 3.9405 5.0401 18 1 7.0553 4.0670 6.2700 19 1 6.9941 3.1883 4.0107 20 1 5.9045 5.2933 4.5229 21 6 1.6170 2.7997 7.3244 22 6 1.0018 3.8511 6.3973 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.8934 -0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 2.3219 1.6503 -2.1238 29 1 3.1154 4.0221 -1.7420 30 1 0.9217 1.5930 4.9552 31 1 2.6344 1.1149 5.0334 32 1 5.4151 1.2175 5.1286 33 1 1.0516 1.8827 7.4905 34 1 2.1952 3.1568 8.1765 35 1 1.1757 4.8993 6.6400 36 1 0.0321 3.6258 5.9533 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000744276080.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:28:30 Heat of formation + Delta-G solvation = -47.795884 kcal Electronic energy + Delta-G solvation = -19876.900791 eV Core-core repulsion = 16839.099500 eV Total energy + Delta-G solvation = -3037.801291 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.092 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.25964 -39.42409 -38.35030 -36.71013 -34.19119 -33.68411 -30.88098 -28.40358 -27.42463 -26.25510 -23.41063 -23.11497 -22.81899 -21.13190 -19.67155 -19.34757 -18.40274 -17.44156 -17.23225 -16.75436 -16.50255 -15.87351 -15.34099 -15.05186 -14.93216 -14.66142 -14.09749 -13.78205 -13.72967 -13.53835 -13.23924 -12.87760 -12.86025 -12.78191 -12.40861 -12.33685 -12.16147 -12.04383 -11.63740 -11.57296 -11.37801 -11.18292 -11.08357 -10.67879 -10.08838 -9.86640 -9.45881 -8.07823 -6.18087 -0.56404 0.51448 1.03568 1.31538 1.39124 1.42733 1.52347 1.83909 2.04433 2.41158 3.02137 3.56314 3.84692 3.88832 4.12855 4.20020 4.28065 4.36537 4.44789 4.49994 4.56702 4.73856 4.75636 4.84911 4.89247 4.97500 5.03534 5.08844 5.16007 5.30266 5.37899 5.39916 5.46901 5.50550 5.76883 5.81119 6.32222 6.76094 6.91169 7.43929 8.92172 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.016850 B = 0.006729 C = 0.005608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.367856 B = 4160.163077 C = 4991.424736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.074 4.074 3 C -0.011 4.011 4 C -0.155 4.155 5 C -0.210 4.210 6 S 0.224 5.776 7 C -0.300 4.300 8 C 0.521 3.479 9 O -0.534 6.534 10 O -0.337 6.337 11 C 0.130 3.870 12 C 0.007 3.993 13 C -0.497 4.497 14 H 0.057 0.943 15 C 0.034 3.966 16 N -0.907 5.907 17 Si 0.944 3.056 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.263 1.263 21 C -0.184 4.184 22 C -0.188 4.188 23 H 0.027 0.973 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.059 0.941 27 H 0.103 0.897 28 H 0.182 0.818 29 H 0.210 0.790 30 H 0.031 0.969 31 H 0.081 0.919 32 H 0.260 0.740 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.470 1.455 -14.632 15.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.113 4.113 3 C -0.028 4.028 4 C -0.185 4.185 5 C -0.348 4.348 6 S 0.494 5.506 7 C -0.417 4.417 8 C 0.367 3.633 9 O -0.428 6.428 10 O -0.252 6.252 11 C 0.057 3.943 12 C 0.007 3.993 13 C -0.534 4.534 14 H 0.075 0.925 15 C -0.167 4.167 16 N -0.545 5.545 17 Si 0.769 3.231 18 H -0.199 1.199 19 H -0.210 1.210 20 H -0.187 1.187 21 C -0.222 4.222 22 C -0.225 4.225 23 H 0.047 0.953 24 H 0.090 0.910 25 H 0.090 0.910 26 H 0.078 0.922 27 H 0.121 0.879 28 H 0.199 0.801 29 H 0.227 0.773 30 H 0.050 0.950 31 H 0.099 0.901 32 H 0.069 0.931 33 H 0.099 0.901 34 H 0.102 0.898 35 H 0.105 0.895 36 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -4.105 2.385 -13.807 14.600 hybrid contribution 0.461 -1.163 -0.270 1.280 sum -3.644 1.222 -14.077 14.592 Atomic orbital electron populations 1.21557 0.93559 1.02440 1.01253 1.20466 0.97195 0.90200 1.03472 1.19925 0.94760 0.97665 0.90438 1.20106 1.04327 0.94278 0.99775 1.25941 1.05199 1.01731 1.01893 1.83672 1.58278 1.09738 0.98882 1.23571 1.21309 1.02938 0.93931 1.20206 0.74692 0.82744 0.85645 1.90729 1.43397 1.21851 1.86869 1.86582 1.78316 1.44190 1.16117 1.22504 0.97179 0.97677 0.76936 1.19042 0.93089 0.96196 0.91003 1.20632 0.91844 0.95735 1.45231 0.92462 1.25569 1.01683 0.95330 0.94074 1.69934 1.28774 1.06801 1.49040 0.85756 0.79729 0.79338 0.78256 1.19900 1.21035 1.18702 1.22967 1.04409 0.99514 0.95271 1.22983 0.97298 0.96632 1.05576 0.95325 0.90964 0.91022 0.92241 0.87861 0.80066 0.77344 0.95036 0.90060 0.93097 0.90137 0.89762 0.89480 0.89665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.30 9.75 71.98 0.70 -2.60 16 2 C -0.07 -2.04 5.49 29.85 0.16 -1.88 16 3 C -0.01 -0.34 5.16 -20.41 -0.11 -0.45 16 4 C -0.15 -3.33 9.96 21.08 0.21 -3.12 16 5 C -0.21 -4.34 10.92 66.82 0.73 -3.61 16 6 S 0.22 6.84 22.93 -56.49 -1.30 5.54 16 7 C -0.30 -11.17 6.45 24.05 0.16 -11.01 16 8 C 0.52 24.06 7.91 69.94 0.55 24.62 16 9 O -0.53 -25.78 13.31 19.42 0.26 -25.52 16 10 O -0.34 -17.11 9.70 -58.06 -0.56 -17.67 16 11 C 0.13 6.76 4.60 71.98 0.33 7.09 16 12 C 0.01 0.36 2.13 -52.93 -0.11 0.25 16 13 C -0.50 -27.34 8.76 25.60 0.22 -27.12 16 14 H 0.06 3.11 7.84 -2.91 -0.02 3.08 16 15 C 0.03 1.85 5.17 84.65 0.44 2.29 16 16 N -0.91 -52.10 10.77 21.45 0.23 -51.87 16 17 Si 0.94 43.38 29.55 68.60 2.03 45.41 16 18 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 19 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 20 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 21 C -0.18 -8.20 9.96 30.62 0.30 -7.89 16 22 C -0.19 -8.06 9.92 30.62 0.30 -7.76 16 23 H 0.03 0.89 7.43 -2.39 -0.02 0.87 16 24 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 25 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 26 H 0.06 2.06 6.43 -2.38 -0.02 2.05 16 27 H 0.10 2.07 8.12 -2.39 -0.02 2.05 16 28 H 0.18 2.47 8.06 -2.91 -0.02 2.45 16 29 H 0.21 2.52 8.06 -2.91 -0.02 2.50 16 30 H 0.03 1.55 7.94 -2.39 -0.02 1.53 16 31 H 0.08 4.70 6.06 -2.39 -0.01 4.68 16 32 H 0.26 14.39 8.32 -92.71 -0.77 13.62 16 33 H 0.08 3.33 8.14 -2.38 -0.02 3.31 16 34 H 0.08 3.71 8.14 -2.39 -0.02 3.70 16 35 H 0.09 3.57 8.14 -2.39 -0.02 3.55 16 36 H 0.08 3.35 8.14 -2.39 -0.02 3.33 16 Total: -1.00 -65.88 320.87 5.63 -60.25 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: 1.08 Total: 15.05 kcal Atomic # 6 Polarization: -35.08 SS G_CDS: 3.90 Total: -31.18 kcal Atomic # 7 Polarization: -52.10 SS G_CDS: 0.23 Total: -51.87 kcal Atomic # 8 Polarization: -42.89 SS G_CDS: -0.30 Total: -43.19 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Atomic # 16 Polarization: 6.84 SS G_CDS: -1.30 Total: 5.54 kcal Total: -65.88 5.63 -60.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744276080.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.452 kcal (2) G-P(sol) polarization free energy of solvation -65.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds