Wall clock time and date at job start Tue Mar 31 2020 01:48:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47243 * 2 1 4 4 C 1.53004 * 109.47137 * 240.00434 * 2 1 3 5 5 C 1.50695 * 109.47535 * 64.99914 * 4 2 1 6 6 O 1.21283 * 119.99476 * 359.97438 * 5 4 2 7 7 C 1.46977 * 120.00272 * 180.27501 * 5 4 2 8 8 C 1.39952 * 120.19683 * 359.72720 * 7 5 4 9 9 C 1.37758 * 119.84960 * 179.97438 * 8 7 5 10 10 C 1.38518 * 120.25201 * 0.02562 * 9 8 7 11 11 C 1.38217 * 120.40438 * 0.02562 * 10 9 8 12 12 C 1.38279 * 120.14230 * 359.74014 * 11 10 9 13 13 F 1.35100 * 120.13363 * 180.25848 * 12 11 10 14 14 C 1.50699 * 109.47084 * 120.00492 * 2 1 3 15 15 O 1.21206 * 120.00235 * 120.00171 * 14 2 1 16 16 O 1.34310 * 119.99726 * 299.99770 * 14 2 1 17 17 C 1.34927 * 116.99894 * 180.02562 * 16 14 2 18 18 H 1.07992 * 119.99945 * 0.02562 * 17 16 14 19 19 C 1.38752 * 119.99641 * 180.02562 * 17 16 14 20 20 N 1.31442 * 120.00741 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99778 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47136 * 59.99498 * 21 19 17 23 23 H 1.48501 * 109.47458 * 180.02562 * 21 19 17 24 24 H 1.48509 * 109.47019 * 300.00146 * 21 19 17 25 25 H 1.08990 * 109.46949 * 299.99844 * 1 2 3 26 26 H 1.09000 * 109.46939 * 59.99651 * 1 2 3 27 27 H 1.09003 * 109.46857 * 179.97438 * 1 2 3 28 28 H 1.09009 * 109.46730 * 304.99822 * 4 2 1 29 29 H 1.08998 * 109.46846 * 185.00367 * 4 2 1 30 30 H 1.08001 * 120.07113 * 0.02562 * 8 7 5 31 31 H 1.08008 * 119.87264 * 179.97438 * 9 8 7 32 32 H 1.08005 * 119.79827 * 179.97438 * 10 9 8 33 33 H 1.07998 * 119.93037 * 180.02562 * 11 10 9 34 34 H 0.96993 * 120.00390 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 1.6414 0.0571 -2.4766 6 8 1.0110 1.0870 -2.3633 7 6 2.0109 -0.4353 -3.8113 8 6 2.7378 -1.6235 -3.9469 9 6 3.0798 -2.0787 -5.2013 10 6 2.7075 -1.3646 -6.3283 11 6 1.9904 -0.1894 -6.2065 12 6 1.6341 0.2802 -4.9556 13 9 0.9287 1.4263 -4.8370 14 6 2.0324 -0.7105 1.2304 15 8 2.7292 -1.6960 1.1192 16 8 1.7079 -0.2517 2.4503 17 6 2.1907 -0.9337 3.5096 18 1 2.8084 -1.8058 3.3544 19 6 1.8936 -0.5144 4.7985 20 7 1.1414 0.5468 4.9876 21 14 2.5627 -1.4582 6.2652 22 1 4.0469 -1.4557 6.2202 23 1 2.1038 -0.8119 7.5210 24 1 2.0686 -2.8580 6.2203 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6054 -1.7198 -1.2952 29 1 3.1264 -0.7994 -1.2056 30 1 3.0292 -2.1827 -3.0701 31 1 3.6412 -2.9954 -5.3063 32 1 2.9799 -1.7280 -7.3082 33 1 1.7037 0.3610 -7.0904 34 1 0.9341 0.8400 5.8885 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000745487898.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:48:46 Heat of formation + Delta-G solvation = -163.665827 kcal Electronic energy + Delta-G solvation = -20986.228401 eV Core-core repulsion = 17377.189437 eV Total energy + Delta-G solvation = -3609.038965 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.094 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.97897 -41.49791 -40.71282 -39.27078 -37.43905 -35.28692 -34.28072 -32.84981 -31.47448 -29.22391 -27.67973 -25.64606 -24.62200 -23.44874 -21.67195 -20.46017 -19.88107 -19.00353 -18.42418 -17.47876 -17.45352 -17.03367 -16.79098 -16.46286 -16.25561 -15.97762 -15.58152 -15.50751 -15.07313 -14.55315 -14.46783 -14.12554 -13.73635 -13.59715 -13.31323 -13.09566 -12.98089 -12.86851 -12.39195 -12.37083 -12.25340 -12.18791 -12.14855 -11.90026 -10.99150 -10.72264 -10.69781 -10.15887 -9.79443 -8.53666 -6.34425 -0.50975 0.18192 1.29213 1.31105 1.33969 1.50773 1.63449 2.07678 2.50302 2.63123 2.97461 3.07118 3.17863 3.52081 3.68906 3.89280 4.00634 4.10141 4.19254 4.29292 4.37332 4.56905 4.62146 4.70063 4.79719 4.89435 4.99634 5.03920 5.04541 5.15361 5.22862 5.25004 5.37230 5.82314 5.82521 6.39338 6.63074 6.90864 7.76715 8.66997 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.038302 B = 0.003456 C = 0.003211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.847738 B = 8100.335683 C = 8717.296626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.060 4.060 3 H 0.097 0.903 4 C -0.136 4.136 5 C 0.400 3.600 6 O -0.473 6.473 7 C -0.225 4.225 8 C -0.046 4.046 9 C -0.137 4.137 10 C -0.047 4.047 11 C -0.171 4.171 12 C 0.122 3.878 13 F -0.141 7.141 14 C 0.403 3.597 15 O -0.574 6.574 16 O -0.243 6.243 17 C -0.423 4.423 18 H 0.086 0.914 19 C -0.006 4.006 20 N -0.905 5.905 21 Si 1.019 2.981 22 H -0.260 1.260 23 H -0.262 1.262 24 H -0.259 1.259 25 H 0.050 0.950 26 H 0.086 0.914 27 H 0.061 0.939 28 H 0.121 0.879 29 H 0.118 0.882 30 H 0.157 0.843 31 H 0.170 0.830 32 H 0.177 0.823 33 H 0.159 0.841 34 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.386 -5.772 -22.787 23.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.079 4.079 3 H 0.115 0.885 4 C -0.173 4.173 5 C 0.280 3.720 6 O -0.350 6.350 7 C -0.227 4.227 8 C -0.064 4.064 9 C -0.154 4.154 10 C -0.064 4.064 11 C -0.190 4.190 12 C 0.103 3.897 13 F -0.119 7.119 14 C 0.251 3.749 15 O -0.472 6.472 16 O -0.151 6.151 17 C -0.499 4.499 18 H 0.104 0.896 19 C -0.206 4.206 20 N -0.542 5.542 21 Si 0.838 3.162 22 H -0.184 1.184 23 H -0.186 1.186 24 H -0.184 1.184 25 H 0.070 0.930 26 H 0.104 0.896 27 H 0.080 0.920 28 H 0.139 0.861 29 H 0.136 0.864 30 H 0.174 0.826 31 H 0.188 0.812 32 H 0.194 0.806 33 H 0.177 0.823 34 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.094 -5.289 -22.561 23.378 hybrid contribution -0.047 0.267 1.004 1.040 sum 3.047 -5.022 -21.557 22.343 Atomic orbital electron populations 1.21768 0.91876 1.02561 1.03262 1.20592 0.98675 1.00007 0.88612 0.88462 1.21819 1.04673 1.00889 0.89924 1.22484 0.75420 0.84055 0.90059 1.90553 1.31755 1.23452 1.89236 1.20606 1.08526 1.00681 0.92848 1.21752 0.92131 0.91888 1.00604 1.21677 1.00757 1.01949 0.91050 1.21780 0.91948 0.91403 1.01286 1.21485 1.02490 0.99727 0.95250 1.18440 0.93371 0.82909 0.95026 1.91528 1.75885 1.47537 1.96995 1.24120 0.80155 0.84345 0.86318 1.90487 1.40151 1.28686 1.87857 1.83910 1.64545 1.52601 1.14052 1.21459 1.33336 1.11885 0.83229 0.89609 1.26603 0.95991 0.97342 1.00705 1.70089 1.35603 1.24432 1.24098 0.84664 0.78882 0.77902 0.74783 1.18421 1.18633 1.18372 0.93046 0.89581 0.92026 0.86056 0.86430 0.82557 0.81227 0.80600 0.82312 0.91237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.13 8.87 71.98 0.64 -4.50 16 2 C -0.06 -2.34 2.48 -11.54 -0.03 -2.37 16 3 H 0.10 3.88 7.96 -2.39 -0.02 3.86 16 4 C -0.14 -4.10 3.13 29.85 0.09 -4.00 16 5 C 0.40 11.76 6.83 27.98 0.19 11.95 16 6 O -0.47 -16.99 12.95 -3.04 -0.04 -17.03 16 7 C -0.22 -5.26 5.87 -20.12 -0.12 -5.38 16 8 C -0.05 -0.73 9.47 22.57 0.21 -0.52 16 9 C -0.14 -1.37 10.02 22.22 0.22 -1.15 16 10 C -0.05 -0.42 10.03 22.33 0.22 -0.19 16 11 C -0.17 -2.50 10.01 22.27 0.22 -2.27 16 12 C 0.12 2.84 7.29 22.74 0.17 3.01 16 13 F -0.14 -4.14 15.55 44.97 0.70 -3.44 16 14 C 0.40 20.46 7.20 71.24 0.51 20.98 16 15 O -0.57 -30.24 15.16 20.79 0.32 -29.93 16 16 O -0.24 -14.69 9.65 14.81 0.14 -14.54 16 17 C -0.42 -26.02 9.65 67.94 0.66 -25.36 16 18 H 0.09 5.25 6.86 -2.91 -0.02 5.23 16 19 C -0.01 -0.37 5.49 84.87 0.47 0.10 16 20 N -0.90 -54.83 13.67 21.62 0.30 -54.53 16 21 Si 1.02 43.77 29.55 68.60 2.03 45.80 16 22 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 23 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 24 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 25 H 0.05 2.12 8.11 -2.39 -0.02 2.10 16 26 H 0.09 2.99 5.95 -2.39 -0.01 2.97 16 27 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 28 H 0.12 3.28 8.09 -2.38 -0.02 3.26 16 29 H 0.12 3.32 7.90 -2.39 -0.02 3.30 16 30 H 0.16 2.12 7.05 -2.91 -0.02 2.10 16 31 H 0.17 0.62 8.06 -2.91 -0.02 0.60 16 32 H 0.18 0.22 8.06 -2.91 -0.02 0.20 16 33 H 0.16 1.62 8.06 -2.91 -0.02 1.60 16 34 H 0.28 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -79.15 306.75 8.03 -71.11 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: 1.13 Total: 12.27 kcal Atomic # 6 Polarization: -13.17 SS G_CDS: 3.46 Total: -9.71 kcal Atomic # 7 Polarization: -54.83 SS G_CDS: 0.30 Total: -54.53 kcal Atomic # 8 Polarization: -61.91 SS G_CDS: 0.42 Total: -61.49 kcal Atomic # 9 Polarization: -4.14 SS G_CDS: 0.70 Total: -3.44 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Total: -79.15 8.03 -71.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745487898.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.551 kcal (2) G-P(sol) polarization free energy of solvation -79.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds