Wall clock time and date at job start Tue Mar 31 2020 01:19:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38258 * 119.99997 * 2 1 4 4 C 1.38211 * 119.99784 * 180.23526 * 3 2 1 5 5 C 1.38256 * 120.00062 * 359.47854 * 4 3 2 6 6 C 1.50703 * 120.00325 * 180.27920 * 5 4 3 7 7 O 1.45199 * 109.46674 * 90.00030 * 6 5 4 8 8 C 1.34239 * 116.99787 * 180.02562 * 7 6 5 9 9 O 1.20814 * 119.99761 * 0.02562 * 8 7 6 10 10 C 1.50696 * 119.99796 * 180.02562 * 8 7 6 11 11 S 1.81001 * 109.47104 * 180.02562 * 10 8 7 12 12 C 1.76201 * 100.00242 * 179.97438 * 11 10 8 13 13 H 1.08003 * 119.99583 * 359.97438 * 12 11 10 14 14 C 1.38797 * 119.99777 * 179.97438 * 12 11 10 15 15 N 1.31624 * 120.00528 * 0.02562 * 14 12 11 16 16 Si 1.86807 * 119.99706 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.46916 * 0.02562 * 16 14 12 18 18 H 1.48495 * 109.47202 * 120.00301 * 16 14 12 19 19 H 1.48503 * 109.47052 * 240.00700 * 16 14 12 20 20 C 1.38214 * 120.00160 * 0.26318 * 5 4 3 21 21 C 1.38212 * 119.99856 * 179.71368 * 2 1 3 22 22 C 1.50706 * 120.00275 * 0.02562 * 21 2 1 23 23 H 1.09003 * 109.47135 * 270.28406 * 1 2 3 24 24 H 1.09000 * 109.46785 * 30.28531 * 1 2 3 25 25 H 1.09002 * 109.47199 * 150.28503 * 1 2 3 26 26 H 1.07998 * 119.99823 * 359.97438 * 3 2 1 27 27 H 1.08002 * 120.00200 * 179.76459 * 4 3 2 28 28 H 1.08988 * 109.47584 * 210.00451 * 6 5 4 29 29 H 1.09000 * 109.47013 * 330.00967 * 6 5 4 30 30 H 1.09002 * 109.47449 * 299.99590 * 10 8 7 31 31 H 1.09002 * 109.47359 * 59.99871 * 10 8 7 32 32 H 0.96998 * 120.00689 * 179.97438 * 15 14 12 33 33 H 1.07997 * 120.00449 * 180.02562 * 20 5 4 34 34 H 1.09004 * 109.46442 * 270.02096 * 22 21 2 35 35 H 1.09000 * 109.46849 * 30.01503 * 22 21 2 36 36 H 1.08993 * 109.47102 * 150.01800 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1974 0.0000 4 6 3.5805 1.1973 -0.0049 5 6 4.2717 0.0000 0.0011 6 6 5.7788 -0.0001 0.0021 7 8 6.2617 0.0062 1.3714 8 6 7.5924 0.0075 1.5482 9 8 8.3290 0.0039 0.5906 10 6 8.1674 0.0133 2.9411 11 16 9.9750 0.0144 2.8477 12 6 10.3702 0.0221 4.5648 13 1 9.5797 0.0250 5.3008 14 6 11.6972 0.0245 4.9715 15 7 12.6605 0.0215 4.0745 16 14 12.1162 0.0334 6.7920 17 1 10.8627 0.0362 7.5883 18 1 12.9098 -1.1772 7.1232 19 1 12.9089 1.2478 7.1115 20 6 3.5807 -1.1970 0.0065 21 6 2.1981 -1.1970 0.0060 22 6 1.4446 -2.5021 0.0119 23 1 -0.3633 0.0051 1.0277 24 1 -0.3633 0.8874 -0.5183 25 1 -0.3634 -0.8925 -0.5094 26 1 1.6583 2.1326 -0.0004 27 1 4.1205 2.1326 -0.0088 28 1 6.1424 -0.8923 -0.5074 29 1 6.1425 0.8876 -0.5155 30 1 7.8308 0.9053 3.4695 31 1 7.8314 -0.8747 3.4766 32 1 13.5879 0.0235 4.3587 33 1 4.1206 -2.1323 0.0116 34 1 1.2623 -2.8116 1.0411 35 1 0.4925 -2.3743 -0.5031 36 1 2.0340 -3.2642 -0.4977 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000758397714.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:19:30 Heat of formation + Delta-G solvation = -76.768064 kcal Electronic energy + Delta-G solvation = -18169.024971 eV Core-core repulsion = 15129.967352 eV Total energy + Delta-G solvation = -3039.057619 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.092 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.25971 -39.55840 -36.24740 -33.98763 -32.48345 -32.44887 -30.05816 -28.62596 -27.31196 -25.57374 -24.74430 -22.33500 -21.04620 -20.31032 -17.92995 -17.15540 -16.57472 -16.37749 -15.65946 -15.48906 -14.84560 -14.74520 -14.54501 -14.09690 -13.60902 -13.34380 -13.12662 -13.08331 -12.79971 -12.70189 -12.45252 -12.19463 -11.96702 -11.82660 -11.18721 -11.11430 -11.09348 -11.06319 -10.80201 -10.45496 -10.03022 -9.88959 -9.12140 -8.95818 -8.71293 -8.34904 -6.59895 -6.27146 -3.99643 0.98267 1.19454 2.67647 2.70716 3.19962 3.23687 3.29375 3.43691 3.74680 4.15075 4.47528 4.51557 4.64664 4.76672 4.84502 5.04340 5.08764 5.15160 5.21355 5.22972 5.34578 5.36707 5.40281 5.50825 5.55212 5.59060 5.64763 5.79342 5.89680 5.95916 6.09655 6.20760 6.38764 6.41968 6.69923 6.79912 7.56083 8.18498 8.31012 9.18497 10.80424 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.035563 B = 0.002782 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.152721 B =10060.663522 C =10279.365245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.082 4.082 3 C -0.121 4.121 4 C -0.097 4.097 5 C -0.093 4.093 6 C 0.107 3.893 7 O -0.356 6.356 8 C 0.478 3.522 9 O -0.489 6.489 10 C -0.128 4.128 11 S -0.060 6.060 12 C -0.535 4.535 13 H 0.076 0.924 14 C 0.074 3.926 15 N -0.867 5.867 16 Si 0.922 3.078 17 H -0.271 1.271 18 H -0.279 1.279 19 H -0.279 1.279 20 C -0.092 4.092 21 C -0.092 4.092 22 C -0.117 4.117 23 H 0.071 0.929 24 H 0.065 0.935 25 H 0.070 0.930 26 H 0.124 0.876 27 H 0.125 0.875 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.103 0.897 31 H 0.103 0.897 32 H 0.269 0.731 33 H 0.125 0.875 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.742 -0.992 -8.089 25.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.082 4.082 3 C -0.139 4.139 4 C -0.115 4.115 5 C -0.093 4.093 6 C 0.033 3.967 7 O -0.274 6.274 8 C 0.320 3.680 9 O -0.374 6.374 10 C -0.276 4.276 11 S 0.167 5.833 12 C -0.683 4.683 13 H 0.095 0.905 14 C -0.136 4.136 15 N -0.503 5.503 16 Si 0.748 3.252 17 H -0.195 1.195 18 H -0.205 1.205 19 H -0.205 1.205 20 C -0.110 4.110 21 C -0.092 4.092 22 C -0.173 4.173 23 H 0.090 0.910 24 H 0.084 0.916 25 H 0.089 0.911 26 H 0.142 0.858 27 H 0.143 0.857 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.121 0.879 31 H 0.121 0.879 32 H 0.079 0.921 33 H 0.143 0.857 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -22.664 -1.000 -9.355 24.539 hybrid contribution -0.382 0.085 2.105 2.142 sum -23.046 -0.915 -7.250 24.177 Atomic orbital electron populations 1.20873 0.91270 1.02825 1.02450 1.19815 0.96014 0.92700 0.99657 1.20993 0.93959 0.97538 1.01375 1.21074 0.94225 0.97596 0.98580 1.19530 0.93648 0.93711 1.02403 1.21730 0.89884 1.03400 0.81661 1.86595 1.25192 1.84767 1.30852 1.23330 0.79847 0.72366 0.92471 1.90663 1.59903 1.44182 1.42665 1.23300 1.05475 1.06483 0.92344 1.85410 0.89834 1.96876 1.11191 1.22885 0.95033 1.59204 0.91166 0.90536 1.25008 0.95136 0.94361 0.99062 1.70017 0.99988 1.46726 1.33523 0.86066 0.78565 0.77933 0.82648 1.19496 1.20511 1.20505 1.20970 0.93487 0.97679 0.98836 1.19738 0.93478 0.95049 1.00953 1.20858 0.99998 0.93958 1.02509 0.91039 0.91598 0.91122 0.85832 0.85702 0.90396 0.90355 0.87922 0.87925 0.92125 0.85719 0.91032 0.91186 0.91508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.76 9.60 36.01 0.35 -0.41 16 2 C -0.08 -0.76 5.88 -104.62 -0.62 -1.38 16 3 C -0.12 -1.17 9.70 -39.58 -0.38 -1.55 16 4 C -0.10 -1.06 9.70 -39.58 -0.38 -1.45 16 5 C -0.09 -1.13 5.52 -104.62 -0.58 -1.71 16 6 C 0.11 1.48 5.59 36.01 0.20 1.68 16 7 O -0.36 -5.95 10.20 -39.28 -0.40 -6.35 16 8 C 0.48 9.40 7.97 36.00 0.29 9.68 16 9 O -0.49 -10.86 15.61 -18.74 -0.29 -11.15 16 10 C -0.13 -2.66 6.27 36.00 0.23 -2.44 16 11 S -0.06 -1.60 20.58 -107.50 -2.21 -3.81 16 12 C -0.53 -15.10 9.50 30.94 0.29 -14.81 16 13 H 0.08 2.05 7.80 -52.48 -0.41 1.64 16 14 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 15 N -0.87 -25.86 13.22 55.49 0.73 -25.13 16 16 Si 0.92 21.25 29.55 -169.99 -5.02 16.22 16 17 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 18 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 19 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 20 C -0.09 -1.02 9.36 -39.58 -0.37 -1.39 16 21 C -0.09 -0.90 5.88 -104.62 -0.62 -1.52 16 22 C -0.12 -0.84 9.60 36.01 0.35 -0.49 16 23 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.07 0.36 8.09 -51.93 -0.42 -0.06 16 25 H 0.07 0.38 5.95 -51.93 -0.31 0.07 16 26 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 27 H 0.13 1.23 8.06 -52.49 -0.42 0.80 16 28 H 0.08 1.03 8.08 -51.94 -0.42 0.61 16 29 H 0.08 1.04 8.08 -51.93 -0.42 0.62 16 30 H 0.10 1.98 8.14 -51.91 -0.42 1.56 16 31 H 0.10 1.98 8.14 -51.92 -0.42 1.56 16 32 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 33 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.40 5.95 -51.93 -0.31 0.09 16 36 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 LS Contribution 327.64 15.07 4.94 4.94 Total: -1.00 -32.77 327.64 -8.40 -41.17 By element: Atomic # 1 Polarization: 2.69 SS G_CDS: -4.80 Total: -2.11 kcal Atomic # 6 Polarization: -12.45 SS G_CDS: -1.34 Total: -13.79 kcal Atomic # 7 Polarization: -25.86 SS G_CDS: 0.73 Total: -25.13 kcal Atomic # 8 Polarization: -16.80 SS G_CDS: -0.69 Total: -17.50 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -32.77 -8.40 -41.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758397714.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.594 kcal (2) G-P(sol) polarization free energy of solvation -32.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds