Wall clock time and date at job start Tue Mar 31 2020 01:19:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38258 * 119.99997 * 2 1 4 4 C 1.38211 * 119.99784 * 180.23526 * 3 2 1 5 5 C 1.38256 * 120.00062 * 359.47854 * 4 3 2 6 6 C 1.50703 * 120.00325 * 180.27920 * 5 4 3 7 7 O 1.45199 * 109.46674 * 90.00030 * 6 5 4 8 8 C 1.34239 * 116.99787 * 180.02562 * 7 6 5 9 9 O 1.20814 * 119.99761 * 0.02562 * 8 7 6 10 10 C 1.50696 * 119.99796 * 180.02562 * 8 7 6 11 11 S 1.81001 * 109.47104 * 180.02562 * 10 8 7 12 12 C 1.76201 * 100.00242 * 179.97438 * 11 10 8 13 13 H 1.08003 * 119.99583 * 359.97438 * 12 11 10 14 14 C 1.38797 * 119.99777 * 179.97438 * 12 11 10 15 15 N 1.31624 * 120.00528 * 0.02562 * 14 12 11 16 16 Si 1.86807 * 119.99706 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.46916 * 0.02562 * 16 14 12 18 18 H 1.48495 * 109.47202 * 120.00301 * 16 14 12 19 19 H 1.48503 * 109.47052 * 240.00700 * 16 14 12 20 20 C 1.38214 * 120.00160 * 0.26318 * 5 4 3 21 21 C 1.38212 * 119.99856 * 179.71368 * 2 1 3 22 22 C 1.50706 * 120.00275 * 0.02562 * 21 2 1 23 23 H 1.09003 * 109.47135 * 270.28406 * 1 2 3 24 24 H 1.09000 * 109.46785 * 30.28531 * 1 2 3 25 25 H 1.09002 * 109.47199 * 150.28503 * 1 2 3 26 26 H 1.07998 * 119.99823 * 359.97438 * 3 2 1 27 27 H 1.08002 * 120.00200 * 179.76459 * 4 3 2 28 28 H 1.08988 * 109.47584 * 210.00451 * 6 5 4 29 29 H 1.09000 * 109.47013 * 330.00967 * 6 5 4 30 30 H 1.09002 * 109.47449 * 299.99590 * 10 8 7 31 31 H 1.09002 * 109.47359 * 59.99871 * 10 8 7 32 32 H 0.96998 * 120.00689 * 179.97438 * 15 14 12 33 33 H 1.07997 * 120.00449 * 180.02562 * 20 5 4 34 34 H 1.09004 * 109.46442 * 270.02096 * 22 21 2 35 35 H 1.09000 * 109.46849 * 30.01503 * 22 21 2 36 36 H 1.08993 * 109.47102 * 150.01800 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1974 0.0000 4 6 3.5805 1.1973 -0.0049 5 6 4.2717 0.0000 0.0011 6 6 5.7788 -0.0001 0.0021 7 8 6.2617 0.0062 1.3714 8 6 7.5924 0.0075 1.5482 9 8 8.3290 0.0039 0.5906 10 6 8.1674 0.0133 2.9411 11 16 9.9750 0.0144 2.8477 12 6 10.3702 0.0221 4.5648 13 1 9.5797 0.0250 5.3008 14 6 11.6972 0.0245 4.9715 15 7 12.6605 0.0215 4.0745 16 14 12.1162 0.0334 6.7920 17 1 10.8627 0.0362 7.5883 18 1 12.9098 -1.1772 7.1232 19 1 12.9089 1.2478 7.1115 20 6 3.5807 -1.1970 0.0065 21 6 2.1981 -1.1970 0.0060 22 6 1.4446 -2.5021 0.0119 23 1 -0.3633 0.0051 1.0277 24 1 -0.3633 0.8874 -0.5183 25 1 -0.3634 -0.8925 -0.5094 26 1 1.6583 2.1326 -0.0004 27 1 4.1205 2.1326 -0.0088 28 1 6.1424 -0.8923 -0.5074 29 1 6.1425 0.8876 -0.5155 30 1 7.8308 0.9053 3.4695 31 1 7.8314 -0.8747 3.4766 32 1 13.5879 0.0235 4.3587 33 1 4.1206 -2.1323 0.0116 34 1 1.2623 -2.8116 1.0411 35 1 0.4925 -2.3743 -0.5031 36 1 2.0340 -3.2642 -0.4977 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000758397714.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:19:30 Heat of formation + Delta-G solvation = -94.005179 kcal Electronic energy + Delta-G solvation = -18169.772429 eV Core-core repulsion = 15129.967352 eV Total energy + Delta-G solvation = -3039.805076 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.092 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.59431 -40.50974 -37.68121 -34.82986 -34.61996 -33.16766 -31.56858 -29.57340 -28.03655 -27.70484 -25.62832 -23.08669 -22.53659 -21.14937 -19.91753 -18.71746 -17.81321 -17.58101 -16.90621 -16.66085 -16.52509 -16.04074 -15.65372 -15.15022 -14.87280 -14.62086 -14.28720 -14.03452 -13.73886 -13.58356 -13.56839 -13.26415 -13.17678 -12.92236 -12.78288 -12.64702 -12.59216 -11.98273 -11.90311 -11.76582 -11.69461 -11.59644 -11.18178 -10.39121 -9.74397 -9.48596 -8.74893 -8.38303 -6.18254 0.11993 0.41552 1.08009 1.09455 1.41623 1.41958 1.56535 1.91793 2.23019 2.77429 2.96777 3.26766 3.55513 3.72539 3.88617 3.99519 4.05119 4.08248 4.16076 4.27322 4.39565 4.42405 4.45148 4.70142 4.73099 4.82043 4.86870 4.98114 5.03150 5.21126 5.21866 5.35637 5.40694 5.46441 5.56260 5.69607 6.05559 6.17708 6.65350 7.03469 8.71246 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.035563 B = 0.002782 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.152721 B =10060.663522 C =10279.365245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.084 4.084 3 C -0.126 4.126 4 C -0.109 4.109 5 C -0.114 4.114 6 C 0.106 3.894 7 O -0.349 6.349 8 C 0.488 3.512 9 O -0.520 6.520 10 C -0.108 4.108 11 S -0.137 6.137 12 C -0.547 4.547 13 H 0.085 0.915 14 C 0.015 3.985 15 N -0.910 5.910 16 Si 1.001 2.999 17 H -0.257 1.257 18 H -0.273 1.273 19 H -0.273 1.273 20 C -0.106 4.106 21 C -0.100 4.100 22 C -0.116 4.116 23 H 0.079 0.921 24 H 0.077 0.923 25 H 0.082 0.918 26 H 0.146 0.854 27 H 0.130 0.870 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.121 0.879 31 H 0.121 0.879 32 H 0.273 0.727 33 H 0.127 0.873 34 H 0.076 0.924 35 H 0.087 0.913 36 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.278 -1.031 -6.960 27.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.084 4.084 3 C -0.143 4.143 4 C -0.127 4.127 5 C -0.114 4.114 6 C 0.032 3.968 7 O -0.266 6.266 8 C 0.331 3.669 9 O -0.408 6.408 10 C -0.257 4.257 11 S 0.090 5.910 12 C -0.695 4.695 13 H 0.104 0.896 14 C -0.190 4.190 15 N -0.546 5.546 16 Si 0.823 3.177 17 H -0.181 1.181 18 H -0.198 1.198 19 H -0.198 1.198 20 C -0.124 4.124 21 C -0.100 4.100 22 C -0.172 4.172 23 H 0.098 0.902 24 H 0.096 0.904 25 H 0.101 0.899 26 H 0.164 0.836 27 H 0.148 0.852 28 H 0.097 0.903 29 H 0.099 0.901 30 H 0.139 0.861 31 H 0.139 0.861 32 H 0.082 0.918 33 H 0.145 0.855 34 H 0.095 0.905 35 H 0.105 0.895 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -25.234 -1.040 -8.235 26.564 hybrid contribution 0.222 0.098 1.655 1.673 sum -25.012 -0.942 -6.579 25.880 Atomic orbital electron populations 1.20945 0.88996 1.04086 1.03294 1.20243 0.97755 0.92307 0.98078 1.21307 0.93493 0.98851 1.00680 1.21252 0.95154 0.97426 0.98845 1.19480 0.92408 0.94787 1.04703 1.21955 0.91285 1.03621 0.79899 1.86571 1.23086 1.83976 1.33009 1.23014 0.80655 0.71710 0.91548 1.90656 1.60902 1.45806 1.43442 1.23096 1.00637 1.08228 0.93702 1.85520 0.96086 1.97163 1.12223 1.23220 0.95756 1.59251 0.91263 0.89642 1.26133 0.94880 0.93533 1.04439 1.70164 1.00540 1.47755 1.36156 0.84868 0.78699 0.78143 0.76008 1.18077 1.19838 1.19836 1.21141 0.94464 0.97476 0.99279 1.20083 0.93105 0.96590 1.00265 1.20914 1.00508 0.92660 1.03145 0.90229 0.90401 0.89900 0.83619 0.85164 0.90261 0.90132 0.86085 0.86092 0.91815 0.85465 0.90494 0.89463 0.91167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.14 9.60 71.24 0.68 -0.45 16 2 C -0.08 -1.37 5.88 -19.86 -0.12 -1.49 16 3 C -0.13 -2.19 9.70 22.27 0.22 -1.97 16 4 C -0.11 -2.30 9.70 22.27 0.22 -2.09 16 5 C -0.11 -2.73 5.52 -19.86 -0.11 -2.83 16 6 C 0.11 2.92 5.59 71.24 0.40 3.32 16 7 O -0.35 -11.52 10.20 -51.50 -0.53 -12.05 16 8 C 0.49 19.18 7.97 71.23 0.57 19.75 16 9 O -0.52 -23.57 15.61 22.00 0.34 -23.23 16 10 C -0.11 -4.45 6.27 71.23 0.45 -4.01 16 11 S -0.14 -7.51 20.58 -56.49 -1.16 -8.68 16 12 C -0.55 -30.95 9.50 67.95 0.65 -30.30 16 13 H 0.09 4.51 7.80 -2.91 -0.02 4.49 16 14 C 0.02 0.85 5.49 84.86 0.47 1.32 16 15 N -0.91 -55.10 13.22 21.65 0.29 -54.81 16 16 Si 1.00 43.19 29.55 68.60 2.03 45.22 16 17 H -0.26 -10.41 7.11 99.48 0.71 -9.71 16 18 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 19 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 20 C -0.11 -2.29 9.36 22.27 0.21 -2.08 16 21 C -0.10 -1.80 5.88 -19.86 -0.12 -1.92 16 22 C -0.12 -1.40 9.60 71.24 0.68 -0.72 16 23 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 24 H 0.08 0.59 8.09 -2.39 -0.02 0.57 16 25 H 0.08 0.61 5.95 -2.39 -0.01 0.60 16 26 H 0.15 1.80 8.06 -2.91 -0.02 1.78 16 27 H 0.13 2.49 8.06 -2.91 -0.02 2.46 16 28 H 0.08 2.14 8.08 -2.39 -0.02 2.12 16 29 H 0.08 2.17 8.08 -2.39 -0.02 2.15 16 30 H 0.12 4.54 8.14 -2.39 -0.02 4.52 16 31 H 0.12 4.54 8.14 -2.39 -0.02 4.52 16 32 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 33 H 0.13 2.55 8.06 -2.91 -0.02 2.53 16 34 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 35 H 0.09 0.74 5.95 -2.39 -0.01 0.73 16 36 H 0.07 0.80 8.08 -2.39 -0.02 0.78 16 Total: -1.00 -71.12 327.64 6.23 -64.89 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: 1.07 Total: 12.13 kcal Atomic # 6 Polarization: -27.67 SS G_CDS: 4.19 Total: -23.48 kcal Atomic # 7 Polarization: -55.10 SS G_CDS: 0.29 Total: -54.81 kcal Atomic # 8 Polarization: -35.09 SS G_CDS: -0.18 Total: -35.27 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Atomic # 16 Polarization: -7.51 SS G_CDS: -1.16 Total: -8.68 kcal Total: -71.12 6.23 -64.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758397714.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.118 kcal (2) G-P(sol) polarization free energy of solvation -71.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds