Wall clock time and date at job start Tue Mar 31 2020 01:03:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31442 * 1 3 3 Si 1.86798 * 120.00031 * 2 1 4 4 H 1.48502 * 109.47259 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47417 * 299.99745 * 3 2 1 6 6 H 1.48503 * 109.47154 * 59.99970 * 3 2 1 7 7 C 1.38779 * 120.00091 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00274 * 179.97438 * 7 2 1 9 9 O 1.34858 * 119.99915 * 0.02562 * 7 2 1 10 10 C 1.34904 * 116.99983 * 179.97438 * 9 7 2 11 11 O 1.21655 * 120.00108 * 0.02562 * 10 9 7 12 12 C 1.46338 * 119.99540 * 179.97438 * 10 9 7 13 13 C 1.35817 * 125.52632 * 180.02562 * 12 10 9 14 14 C 1.38975 * 114.09074 * 179.77398 * 13 12 10 15 15 C 1.34301 * 114.45460 * 2.47351 * 14 13 12 16 16 S 1.72119 * 110.33452 * 356.52828 * 15 14 13 17 17 C 1.52282 * 129.57504 * 173.77896 * 15 14 13 18 18 C 1.52345 * 112.91194 * 359.33972 * 17 15 14 19 19 C 1.51788 * 111.35357 * 80.06655 * 18 17 15 20 20 C 1.51611 * 113.23061 * 321.44968 * 19 18 17 21 21 C 1.53081 * 105.61947 * 276.76988 * 20 19 18 22 22 C 1.52025 * 119.99762 * 186.11578 * 14 13 12 23 23 H 0.97003 * 119.99558 * 0.02562 * 1 2 3 24 24 H 1.07999 * 122.95935 * 359.80016 * 13 12 10 25 25 H 1.09003 * 108.79017 * 120.22637 * 17 15 14 26 26 H 1.08997 * 108.79219 * 238.56933 * 17 15 14 27 27 H 1.09001 * 109.10563 * 200.54321 * 18 17 15 28 28 H 1.08996 * 109.10846 * 319.58498 * 18 17 15 29 29 H 1.08998 * 108.73107 * 82.42198 * 19 18 17 30 30 H 1.09004 * 108.72759 * 200.47859 * 19 18 17 31 31 H 1.08996 * 110.21465 * 35.80076 * 20 19 18 32 32 H 1.09008 * 110.20546 * 157.75259 * 20 19 18 33 33 H 1.09004 * 109.56977 * 182.66430 * 21 20 19 34 34 H 1.09002 * 109.57422 * 302.91120 * 21 20 19 35 35 H 1.09004 * 109.61412 * 220.11080 * 22 14 13 36 36 H 1.08990 * 109.62210 * 340.65799 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6177 0.0000 4 1 3.7084 1.3464 -0.0006 5 1 1.8898 2.3965 -1.2125 6 1 1.8897 2.3964 1.2125 7 6 2.0083 -1.2019 0.0005 8 1 3.0884 -1.2019 0.0001 9 8 1.3340 -2.3698 0.0005 10 6 2.0688 -3.5012 0.0005 11 8 3.2837 -3.4375 0.0010 12 6 1.4043 -4.8050 0.0011 13 6 2.0308 -6.0100 0.0017 14 6 1.1668 -7.0986 0.0071 15 6 -0.1357 -6.7748 -0.0418 16 16 -0.3290 -5.0650 0.0003 17 6 -1.3550 -7.6766 -0.1799 18 6 -0.9921 -9.1522 -0.2885 19 6 -0.6928 -9.7496 1.0744 20 6 0.0674 -8.8069 1.9866 21 6 1.5408 -8.9581 1.6000 22 6 1.7202 -8.5074 0.1487 23 1 -0.4850 0.8401 -0.0004 24 1 3.1058 -6.1134 -0.0014 25 1 -1.9962 -7.5357 0.6902 26 1 -1.9074 -7.3858 -1.0734 27 1 -1.8247 -9.6921 -0.7395 28 1 -0.1135 -9.2576 -0.9249 29 1 -1.6345 -10.0171 1.5537 30 1 -0.1029 -10.6559 0.9374 31 1 -0.2609 -7.7802 1.8252 32 1 -0.0796 -9.0913 3.0286 33 1 2.1551 -8.3385 2.2533 34 1 1.8393 -10.0017 1.6998 35 1 1.1775 -9.1819 -0.5138 36 1 2.7795 -8.5121 -0.1077 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000768709494.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:01 Heat of formation + Delta-G solvation = -57.377747 kcal Electronic energy + Delta-G solvation = -19487.573598 eV Core-core repulsion = 16449.356807 eV Total energy + Delta-G solvation = -3038.216792 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.092 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.75242 -38.84171 -36.08070 -34.91273 -32.91605 -32.21924 -30.51185 -27.53050 -26.72899 -25.23481 -23.09096 -21.81674 -20.67189 -19.67044 -18.00386 -17.53614 -17.46882 -16.22937 -15.89019 -15.02728 -14.81914 -14.55691 -14.34211 -13.86357 -13.75064 -13.19099 -12.91232 -12.55475 -12.48810 -12.01224 -11.79548 -11.73483 -11.65817 -11.34063 -11.14045 -10.98566 -10.78983 -10.71119 -10.46416 -10.42823 -10.12740 -9.86831 -9.81245 -9.17865 -8.64681 -8.17370 -7.97305 -6.49000 -4.11781 0.99152 1.95273 2.43065 2.70821 3.13029 3.16498 3.24424 3.89157 3.95740 4.52064 4.63655 4.72981 4.82196 4.90043 5.05754 5.10222 5.18502 5.25359 5.41119 5.55865 5.65128 5.68976 5.83004 5.87557 5.88844 5.96706 6.04187 6.06349 6.15535 6.18995 6.33795 6.41943 6.55584 6.79274 6.91825 7.33516 7.87242 8.63092 8.98913 9.76134 10.68377 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.037455 B = 0.004206 C = 0.003937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.380135 B = 6655.061070 C = 7110.995764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.041 3.959 3 Si 0.946 3.054 4 H -0.264 1.264 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.373 4.373 8 H 0.099 0.901 9 O -0.205 6.205 10 C 0.460 3.540 11 O -0.546 6.546 12 C -0.199 4.199 13 C -0.085 4.085 14 C -0.107 4.107 15 C -0.207 4.207 16 S 0.205 5.795 17 C -0.044 4.044 18 C -0.124 4.124 19 C -0.117 4.117 20 C -0.133 4.133 21 C -0.114 4.114 22 C -0.069 4.069 23 H 0.271 0.729 24 H 0.145 0.855 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.065 0.935 28 H 0.080 0.920 29 H 0.052 0.948 30 H 0.059 0.941 31 H 0.083 0.917 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.063 0.937 35 H 0.086 0.914 36 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.837 -17.873 0.928 18.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.164 4.164 3 Si 0.770 3.230 4 H -0.188 1.188 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.450 4.450 8 H 0.117 0.883 9 O -0.112 6.112 10 C 0.307 3.693 11 O -0.445 6.445 12 C -0.318 4.318 13 C -0.117 4.117 14 C -0.119 4.119 15 C -0.326 4.326 16 S 0.476 5.524 17 C -0.082 4.082 18 C -0.162 4.162 19 C -0.155 4.155 20 C -0.170 4.170 21 C -0.152 4.152 22 C -0.108 4.108 23 H 0.081 0.919 24 H 0.163 0.837 25 H 0.093 0.907 26 H 0.093 0.907 27 H 0.083 0.917 28 H 0.098 0.902 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.102 0.898 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.104 0.896 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.007 -16.652 0.950 17.415 hybrid contribution 1.705 -0.018 0.007 1.706 sum -3.301 -16.671 0.957 17.021 Atomic orbital electron populations 1.70008 1.06070 1.27875 1.45298 1.25401 0.95884 0.98969 0.96113 0.85567 0.79522 0.79701 0.78221 1.18797 1.20028 1.20024 1.21381 0.92628 0.79589 1.51378 0.88302 1.83945 1.39007 1.13224 1.75015 1.19403 0.85576 0.84209 0.80132 1.90677 1.14477 1.87434 1.51885 1.23413 0.97425 0.95886 1.15034 1.20709 1.01081 0.89328 1.00568 1.19028 0.91081 0.96208 1.05631 1.24501 0.97909 0.99764 1.10454 1.83772 1.03432 0.96792 1.68441 1.20158 0.92710 0.93004 1.02370 1.21496 1.02249 0.94476 0.98009 1.21129 1.00075 0.98743 0.95527 1.21656 0.95464 1.01545 0.98351 1.21634 0.96963 1.00495 0.96085 1.20910 1.00550 0.91988 0.97358 0.91887 0.83730 0.90709 0.90683 0.91668 0.90216 0.92895 0.92206 0.89832 0.92133 0.92138 0.91867 0.89567 0.91326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.00 13.67 55.49 0.76 -24.24 16 2 C 0.04 1.17 5.49 -17.52 -0.10 1.07 16 3 Si 0.95 21.25 29.55 -169.99 -5.02 16.23 16 4 H -0.26 -5.85 7.11 56.52 0.40 -5.45 16 5 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 6 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 7 C -0.37 -11.21 9.65 30.93 0.30 -10.91 16 8 H 0.10 2.98 6.86 -52.49 -0.36 2.62 16 9 O -0.20 -6.07 9.59 -22.12 -0.21 -6.28 16 10 C 0.46 12.30 7.86 33.99 0.27 12.56 16 11 O -0.55 -15.58 16.08 -19.39 -0.31 -15.89 16 12 C -0.20 -4.28 6.41 -37.19 -0.24 -4.52 16 13 C -0.08 -1.54 9.62 -40.18 -0.39 -1.93 16 14 C -0.11 -1.57 4.73 -105.08 -0.50 -2.07 16 15 C -0.21 -2.97 4.50 -34.91 -0.16 -3.13 16 16 S 0.20 3.69 22.72 -107.50 -2.44 1.25 16 17 C -0.04 -0.47 5.10 -27.43 -0.14 -0.61 16 18 C -0.12 -1.10 5.37 -27.68 -0.15 -1.25 16 19 C -0.12 -1.01 5.09 -28.05 -0.14 -1.15 16 20 C -0.13 -1.37 5.75 -27.39 -0.16 -1.53 16 21 C -0.11 -1.18 5.54 -26.68 -0.15 -1.33 16 22 C -0.07 -0.78 5.42 -27.22 -0.15 -0.93 16 23 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 24 H 0.15 2.56 8.05 -52.49 -0.42 2.14 16 25 H 0.07 0.77 7.65 -51.93 -0.40 0.37 16 26 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.08 0.73 4.86 -51.93 -0.25 0.48 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.46 7.57 -51.93 -0.39 0.07 16 31 H 0.08 1.03 4.42 -51.93 -0.23 0.80 16 32 H 0.06 0.58 8.14 -51.92 -0.42 0.15 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.06 0.54 7.85 -51.93 -0.41 0.14 16 35 H 0.09 0.85 4.39 -51.93 -0.23 0.62 16 36 H 0.07 0.74 8.04 -51.93 -0.42 0.32 16 LS Contribution 302.18 15.07 4.55 4.55 Total: -1.00 -32.67 302.18 -8.73 -41.40 By element: Atomic # 1 Polarization: 3.04 SS G_CDS: -4.36 Total: -1.32 kcal Atomic # 6 Polarization: -14.01 SS G_CDS: -1.69 Total: -15.71 kcal Atomic # 7 Polarization: -25.00 SS G_CDS: 0.76 Total: -24.24 kcal Atomic # 8 Polarization: -21.64 SS G_CDS: -0.52 Total: -22.17 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: 3.69 SS G_CDS: -2.44 Total: 1.25 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -32.67 -8.73 -41.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000768709494.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.981 kcal (2) G-P(sol) polarization free energy of solvation -32.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds