Wall clock time and date at job start Tue Mar 31 2020 01:16:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99714 * 2 1 4 4 H 1.48498 * 109.47156 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47291 * 299.99934 * 3 2 1 6 6 H 1.48507 * 109.47124 * 59.99822 * 3 2 1 7 7 C 1.37875 * 120.00333 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99945 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99856 * 0.02562 * 7 2 1 10 10 C 1.53008 * 109.47223 * 180.02562 * 9 7 2 11 11 O 1.45193 * 109.47065 * 179.97438 * 10 9 7 12 12 C 1.34232 * 117.00066 * 179.97438 * 11 10 9 13 13 O 1.20833 * 119.99791 * 359.97438 * 12 11 10 14 14 C 1.50701 * 120.00451 * 180.02562 * 12 11 10 15 15 H 1.08994 * 109.57830 * 299.72829 * 14 12 11 16 16 C 1.52973 * 109.69667 * 179.37881 * 14 12 11 17 17 C 1.53282 * 109.41740 * 188.97008 * 16 14 12 18 18 C 1.53164 * 108.90560 * 70.37732 * 17 16 14 19 19 C 1.51412 * 108.83449 * 310.55841 * 18 17 16 20 20 S 1.75831 * 125.24413 * 196.20142 * 19 18 17 21 21 C 1.75725 * 91.07854 * 179.97438 * 20 19 18 22 22 C 1.32918 * 109.58644 * 0.02562 * 21 20 19 23 23 C 1.34633 * 124.78385 * 16.20948 * 19 18 17 24 24 H 0.96994 * 120.00341 * 359.97438 * 1 2 3 25 25 H 1.09005 * 109.47549 * 59.99740 * 9 7 2 26 26 H 1.09000 * 109.47637 * 299.99615 * 9 7 2 27 27 H 1.08992 * 109.47047 * 59.99726 * 10 9 7 28 28 H 1.08997 * 109.46664 * 299.99809 * 10 9 7 29 29 H 1.08999 * 109.50238 * 308.89587 * 16 14 12 30 30 H 1.08999 * 109.49812 * 68.96857 * 16 14 12 31 31 H 1.09000 * 109.47865 * 310.61656 * 17 16 14 32 32 H 1.09001 * 109.69261 * 190.27506 * 17 16 14 33 33 H 1.09002 * 109.59947 * 190.71468 * 18 17 16 34 34 H 1.09003 * 109.59777 * 70.40693 * 18 17 16 35 35 H 1.07998 * 125.20910 * 180.02562 * 21 20 19 36 36 H 1.07992 * 122.15033 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8902 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0847 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0018 11 8 1.5195 -4.9195 0.0024 12 6 2.2506 -6.0452 0.0030 13 8 3.4573 -5.9820 0.0026 14 6 1.5665 -7.3880 0.0031 15 1 0.9466 -7.4821 0.8947 16 6 2.6157 -8.5012 -0.0117 17 6 1.9241 -9.8504 -0.2370 18 6 1.4113 -9.9105 -1.6790 19 6 0.6381 -8.6430 -1.9761 20 16 -0.4645 -8.4203 -3.3275 21 6 -0.8058 -6.7727 -2.8205 22 6 -0.1111 -6.4913 -1.7228 23 6 0.6962 -7.5175 -1.2397 24 1 -0.4850 0.8400 0.0004 25 1 0.6248 -2.5571 -0.8897 26 1 0.6242 -2.5568 0.8903 27 1 2.8714 -3.6039 0.8922 28 1 2.8727 -3.6046 -0.8877 29 1 3.3274 -8.3197 -0.8172 30 1 3.1424 -8.5174 0.9424 31 1 1.0858 -9.9487 0.4527 32 1 2.6342 -10.6599 -0.0682 33 1 0.7572 -10.7742 -1.7988 34 1 2.2551 -9.9932 -2.3640 35 1 -1.4773 -6.0928 -3.3237 36 1 -0.1689 -5.5285 -1.2372 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771410866.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:16:16 Heat of formation + Delta-G solvation = -79.567466 kcal Electronic energy + Delta-G solvation = -19354.686022 eV Core-core repulsion = 16315.507012 eV Total energy + Delta-G solvation = -3039.179010 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.092 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.49673 -38.66091 -36.26372 -35.03848 -33.35766 -31.54599 -30.16812 -29.02076 -25.48806 -24.15513 -23.60694 -21.31977 -20.93258 -20.41243 -18.35592 -17.47709 -17.07966 -16.28228 -16.11476 -15.68182 -14.84417 -14.56038 -14.46659 -14.27131 -13.58627 -13.30061 -13.01697 -12.86720 -12.43332 -12.37582 -12.11538 -11.74917 -11.30652 -11.24389 -11.16136 -11.01239 -10.91726 -10.75532 -10.70652 -10.52457 -10.19807 -9.63975 -9.61964 -9.29170 -8.54355 -8.45725 -8.33629 -6.11672 -4.15813 0.98229 1.59228 1.96149 2.53062 2.71956 3.23915 3.26730 3.34672 3.40240 4.37758 4.41750 4.60591 4.73012 4.82493 4.88753 5.21065 5.25153 5.27027 5.28209 5.40598 5.53272 5.63418 5.74593 5.89358 5.91012 6.09215 6.10462 6.14975 6.19768 6.40203 6.55105 6.63643 6.99918 7.54599 7.60862 7.85590 8.18007 8.26040 8.89879 9.48797 10.99818 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.025237 B = 0.003981 C = 0.003549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.226791 B = 7031.597718 C = 7888.352654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.898 3.102 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.526 4.526 8 H 0.059 0.941 9 C 0.025 3.975 10 C 0.074 3.926 11 O -0.353 6.353 12 C 0.465 3.535 13 O -0.514 6.514 14 C -0.017 4.017 15 H 0.117 0.883 16 C -0.106 4.106 17 C -0.113 4.113 18 C -0.048 4.048 19 C -0.172 4.172 20 S 0.081 5.919 21 C -0.210 4.210 22 C -0.120 4.120 23 C -0.098 4.098 24 H 0.263 0.737 25 H 0.028 0.972 26 H 0.028 0.972 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.167 0.833 36 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.691 -20.916 -3.178 21.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.141 4.141 3 Si 0.726 3.274 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.564 4.564 8 H 0.078 0.922 9 C -0.012 4.012 10 C 0.001 3.999 11 O -0.270 6.270 12 C 0.308 3.692 13 O -0.403 6.403 14 C -0.038 4.038 15 H 0.135 0.865 16 C -0.143 4.143 17 C -0.151 4.151 18 C -0.088 4.088 19 C -0.290 4.290 20 S 0.346 5.654 21 C -0.344 4.344 22 C -0.149 4.149 23 C -0.111 4.111 24 H 0.072 0.928 25 H 0.046 0.954 26 H 0.046 0.954 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.089 0.911 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.099 0.901 35 H 0.184 0.816 36 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -1.024 -21.606 -4.431 22.080 hybrid contribution 0.870 2.129 1.058 2.531 sum -0.155 -19.477 -3.373 19.768 Atomic orbital electron populations 1.69978 1.06075 1.26870 1.49910 1.24973 0.94904 0.99365 0.94859 0.86433 0.80089 0.83195 0.77710 1.19587 1.20827 1.20821 1.21020 0.93218 0.90134 1.52022 0.92238 1.19168 0.94156 0.89064 0.98799 1.23648 0.96425 0.78899 1.00920 1.86508 1.42272 1.15775 1.82406 1.23261 0.86396 0.87031 0.72537 1.90624 1.15671 1.88203 1.45791 1.19970 0.96328 0.90019 0.97524 0.86496 1.21482 0.96704 0.92173 1.03946 1.21611 1.00608 0.97194 0.95736 1.20329 0.98340 0.92439 0.97647 1.24739 1.04573 0.99923 0.99723 1.84010 1.42000 1.10869 1.28495 1.25370 1.07833 0.98916 1.02327 1.20466 0.96392 1.01300 0.96741 1.19161 1.00583 0.93453 0.97891 0.92776 0.95400 0.95362 0.92334 0.92387 0.90357 0.90375 0.91126 0.90446 0.90374 0.90107 0.81562 0.82304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.23 13.29 55.43 0.74 -25.50 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 16 4 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.53 -14.77 9.11 -34.44 -0.31 -15.09 16 8 H 0.06 1.63 7.74 -52.48 -0.41 1.22 16 9 C 0.03 0.65 5.35 -27.88 -0.15 0.51 16 10 C 0.07 1.64 5.41 37.16 0.20 1.84 16 11 O -0.35 -6.96 7.95 -39.26 -0.31 -7.27 16 12 C 0.47 8.21 7.13 36.01 0.26 8.47 16 13 O -0.51 -10.23 15.61 -18.76 -0.29 -10.52 16 14 C -0.02 -0.23 2.94 -92.16 -0.27 -0.50 16 15 H 0.12 1.35 8.14 -51.93 -0.42 0.92 16 16 C -0.11 -1.16 4.60 -26.60 -0.12 -1.29 16 17 C -0.11 -0.92 5.96 -26.50 -0.16 -1.08 16 18 C -0.05 -0.42 6.25 -27.45 -0.17 -0.60 16 19 C -0.17 -2.03 6.35 -35.23 -0.22 -2.25 16 20 S 0.08 0.91 23.31 -107.50 -2.51 -1.60 16 21 C -0.21 -2.71 11.20 28.89 0.32 -2.39 16 22 C -0.12 -1.77 9.27 -41.06 -0.38 -2.15 16 23 C -0.10 -1.34 5.39 -104.75 -0.56 -1.90 16 24 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 25 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.06 1.29 8.13 -51.93 -0.42 0.87 16 28 H 0.06 1.30 8.13 -51.93 -0.42 0.88 16 29 H 0.08 0.97 7.79 -51.93 -0.40 0.57 16 30 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.07 0.54 8.11 -51.93 -0.42 0.12 16 32 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.17 1.87 8.06 -52.49 -0.42 1.44 16 36 H 0.16 2.62 6.21 -52.49 -0.33 2.29 16 LS Contribution 314.93 15.07 4.75 4.75 Total: -1.00 -30.99 314.93 -9.24 -40.23 By element: Atomic # 1 Polarization: 3.25 SS G_CDS: -4.92 Total: -1.67 kcal Atomic # 6 Polarization: -13.12 SS G_CDS: -1.67 Total: -14.79 kcal Atomic # 7 Polarization: -26.23 SS G_CDS: 0.74 Total: -25.50 kcal Atomic # 8 Polarization: -17.19 SS G_CDS: -0.61 Total: -17.80 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: 0.91 SS G_CDS: -2.51 Total: -1.60 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.99 -9.24 -40.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771410866.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.339 kcal (2) G-P(sol) polarization free energy of solvation -30.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds