Wall clock time and date at job start Tue Mar 31 2020 01:16:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99714 * 2 1 4 4 H 1.48498 * 109.47156 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47291 * 299.99934 * 3 2 1 6 6 H 1.48507 * 109.47124 * 59.99822 * 3 2 1 7 7 C 1.37875 * 120.00333 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99945 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99856 * 0.02562 * 7 2 1 10 10 C 1.53008 * 109.47223 * 180.02562 * 9 7 2 11 11 O 1.45193 * 109.47065 * 179.97438 * 10 9 7 12 12 C 1.34232 * 117.00066 * 179.97438 * 11 10 9 13 13 O 1.20833 * 119.99791 * 359.97438 * 12 11 10 14 14 C 1.50701 * 120.00451 * 180.02562 * 12 11 10 15 15 H 1.08994 * 109.57830 * 299.72829 * 14 12 11 16 16 C 1.52973 * 109.69667 * 179.37881 * 14 12 11 17 17 C 1.53282 * 109.41740 * 188.97008 * 16 14 12 18 18 C 1.53164 * 108.90560 * 70.37732 * 17 16 14 19 19 C 1.51412 * 108.83449 * 310.55841 * 18 17 16 20 20 S 1.75831 * 125.24413 * 196.20142 * 19 18 17 21 21 C 1.75725 * 91.07854 * 179.97438 * 20 19 18 22 22 C 1.32918 * 109.58644 * 0.02562 * 21 20 19 23 23 C 1.34633 * 124.78385 * 16.20948 * 19 18 17 24 24 H 0.96994 * 120.00341 * 359.97438 * 1 2 3 25 25 H 1.09005 * 109.47549 * 59.99740 * 9 7 2 26 26 H 1.09000 * 109.47637 * 299.99615 * 9 7 2 27 27 H 1.08992 * 109.47047 * 59.99726 * 10 9 7 28 28 H 1.08997 * 109.46664 * 299.99809 * 10 9 7 29 29 H 1.08999 * 109.50238 * 308.89587 * 16 14 12 30 30 H 1.08999 * 109.49812 * 68.96857 * 16 14 12 31 31 H 1.09000 * 109.47865 * 310.61656 * 17 16 14 32 32 H 1.09001 * 109.69261 * 190.27506 * 17 16 14 33 33 H 1.09002 * 109.59947 * 190.71468 * 18 17 16 34 34 H 1.09003 * 109.59777 * 70.40693 * 18 17 16 35 35 H 1.07998 * 125.20910 * 180.02562 * 21 20 19 36 36 H 1.07992 * 122.15033 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8902 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0847 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0018 11 8 1.5195 -4.9195 0.0024 12 6 2.2506 -6.0452 0.0030 13 8 3.4573 -5.9820 0.0026 14 6 1.5665 -7.3880 0.0031 15 1 0.9466 -7.4821 0.8947 16 6 2.6157 -8.5012 -0.0117 17 6 1.9241 -9.8504 -0.2370 18 6 1.4113 -9.9105 -1.6790 19 6 0.6381 -8.6430 -1.9761 20 16 -0.4645 -8.4203 -3.3275 21 6 -0.8058 -6.7727 -2.8205 22 6 -0.1111 -6.4913 -1.7228 23 6 0.6962 -7.5175 -1.2397 24 1 -0.4850 0.8400 0.0004 25 1 0.6248 -2.5571 -0.8897 26 1 0.6242 -2.5568 0.8903 27 1 2.8714 -3.6039 0.8922 28 1 2.8727 -3.6046 -0.8877 29 1 3.3274 -8.3197 -0.8172 30 1 3.1424 -8.5174 0.9424 31 1 1.0858 -9.9487 0.4527 32 1 2.6342 -10.6599 -0.0682 33 1 0.7572 -10.7742 -1.7988 34 1 2.2551 -9.9932 -2.3640 35 1 -1.4773 -6.0928 -3.3237 36 1 -0.1689 -5.5285 -1.2372 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771410866.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:16:16 Heat of formation + Delta-G solvation = -95.370643 kcal Electronic energy + Delta-G solvation = -19355.371299 eV Core-core repulsion = 16315.507012 eV Total energy + Delta-G solvation = -3039.864287 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.092 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.84610 -39.80199 -37.81654 -35.99058 -35.46163 -32.77684 -31.95234 -29.95257 -27.29348 -25.46418 -24.53683 -23.06955 -22.20418 -21.61918 -19.45748 -18.92429 -18.29650 -18.00073 -17.68871 -17.12653 -16.48642 -16.01838 -15.38838 -15.22479 -14.92842 -14.44571 -14.42043 -14.15697 -14.01447 -13.67119 -13.13604 -13.04878 -12.99034 -12.71154 -12.61148 -12.56347 -12.19998 -11.96441 -11.89752 -11.76202 -11.52018 -11.49792 -11.35557 -11.25563 -10.63716 -9.49999 -9.28626 -8.29057 -6.42338 0.00300 0.65845 0.92509 1.19605 1.39147 1.39943 1.50344 1.55142 1.90822 2.38798 3.05358 3.46957 3.65294 3.80223 3.88066 4.08498 4.17717 4.19133 4.28905 4.32391 4.41885 4.53428 4.66671 4.73592 4.92979 4.97520 5.07254 5.10567 5.20474 5.23436 5.39191 5.41043 5.44031 5.47710 5.58159 5.72267 6.04515 6.67870 6.72591 7.27604 8.83653 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.025237 B = 0.003981 C = 0.003549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.226791 B = 7031.597718 C = 7888.352654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.008 3.992 3 Si 0.973 3.027 4 H -0.263 1.263 5 H -0.275 1.275 6 H -0.274 1.274 7 C -0.551 4.551 8 H 0.063 0.937 9 C 0.034 3.966 10 C 0.089 3.911 11 O -0.358 6.358 12 C 0.462 3.538 13 O -0.538 6.538 14 C -0.011 4.011 15 H 0.135 0.865 16 C -0.103 4.103 17 C -0.104 4.104 18 C -0.051 4.051 19 C -0.165 4.165 20 S 0.129 5.871 21 C -0.224 4.224 22 C -0.145 4.145 23 C -0.125 4.125 24 H 0.268 0.732 25 H 0.006 0.994 26 H 0.007 0.993 27 H 0.059 0.941 28 H 0.054 0.946 29 H 0.061 0.939 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.105 0.895 33 H 0.103 0.897 34 H 0.091 0.909 35 H 0.175 0.825 36 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.045 -22.773 -3.510 23.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.191 4.191 3 Si 0.796 3.204 4 H -0.187 1.187 5 H -0.200 1.200 6 H -0.199 1.199 7 C -0.589 4.589 8 H 0.081 0.919 9 C -0.003 4.003 10 C 0.016 3.984 11 O -0.274 6.274 12 C 0.306 3.694 13 O -0.428 6.428 14 C -0.032 4.032 15 H 0.152 0.848 16 C -0.141 4.141 17 C -0.143 4.143 18 C -0.090 4.090 19 C -0.283 4.283 20 S 0.394 5.606 21 C -0.359 4.359 22 C -0.175 4.175 23 C -0.138 4.138 24 H 0.077 0.923 25 H 0.024 0.976 26 H 0.025 0.975 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.102 0.898 31 H 0.098 0.902 32 H 0.123 0.877 33 H 0.122 0.878 34 H 0.109 0.891 35 H 0.193 0.807 36 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -0.380 -23.487 -4.763 23.968 hybrid contribution 0.615 2.619 1.104 2.908 sum 0.234 -20.868 -3.659 21.187 Atomic orbital electron populations 1.70095 1.07776 1.28216 1.50389 1.25942 0.95829 1.03336 0.94014 0.85286 0.78884 0.78117 0.78083 1.18704 1.20018 1.19932 1.21397 0.93641 0.91304 1.52510 0.91870 1.18954 0.94228 0.90540 0.96615 1.23146 0.95132 0.79433 1.00692 1.86538 1.42351 1.15715 1.82844 1.24272 0.86352 0.87610 0.71144 1.90601 1.16788 1.88482 1.46938 1.20141 0.97011 0.87587 0.98418 0.84790 1.21532 0.95919 0.92914 1.03711 1.21624 1.01296 0.95849 0.95520 1.20549 0.98741 0.91501 0.98239 1.25238 1.03753 1.00444 0.98850 1.83817 1.40895 1.08445 1.27396 1.25592 1.07616 1.00749 1.01972 1.20406 0.98264 1.00881 0.97931 1.19136 1.01624 0.94113 0.98907 0.92321 0.97608 0.97474 0.92222 0.92762 0.91996 0.89774 0.90157 0.87692 0.87845 0.89110 0.80736 0.85214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.71 13.29 21.45 0.28 -55.42 16 2 C 0.01 0.45 5.46 84.65 0.46 0.91 16 3 Si 0.97 44.00 29.54 68.60 2.03 46.03 16 4 H -0.26 -11.45 7.11 99.48 0.71 -10.75 16 5 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 6 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 7 C -0.55 -31.70 9.11 25.60 0.23 -31.46 16 8 H 0.06 3.50 7.74 -2.91 -0.02 3.48 16 9 C 0.03 1.84 5.35 29.85 0.16 2.00 16 10 C 0.09 4.14 5.41 71.98 0.39 4.53 16 11 O -0.36 -14.80 7.95 -51.44 -0.41 -15.21 16 12 C 0.46 16.68 7.13 71.24 0.51 17.19 16 13 O -0.54 -21.77 15.61 21.94 0.34 -21.43 16 14 C -0.01 -0.28 2.94 -11.79 -0.03 -0.31 16 15 H 0.13 2.98 8.14 -2.39 -0.02 2.96 16 16 C -0.10 -2.09 4.60 30.68 0.14 -1.95 16 17 C -0.10 -1.33 5.96 30.74 0.18 -1.14 16 18 C -0.05 -0.71 6.25 30.13 0.19 -0.52 16 19 C -0.17 -3.54 6.35 25.09 0.16 -3.38 16 20 S 0.13 2.63 23.31 -56.49 -1.32 1.32 16 21 C -0.22 -5.83 11.20 66.65 0.75 -5.08 16 22 C -0.15 -4.44 9.27 21.33 0.20 -4.24 16 23 C -0.13 -3.36 5.39 -19.95 -0.11 -3.47 16 24 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 25 H 0.01 0.32 8.14 -2.38 -0.02 0.30 16 26 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 27 H 0.06 2.73 8.13 -2.39 -0.02 2.71 16 28 H 0.05 2.53 8.13 -2.39 -0.02 2.51 16 29 H 0.06 1.47 7.79 -2.39 -0.02 1.45 16 30 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.08 0.92 8.11 -2.39 -0.02 0.90 16 32 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.18 4.01 8.06 -2.91 -0.02 3.99 16 36 H 0.13 4.66 6.21 -2.91 -0.02 4.64 16 Total: -1.00 -68.20 314.93 5.23 -62.97 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: 1.07 Total: 8.68 kcal Atomic # 6 Polarization: -30.16 SS G_CDS: 3.23 Total: -26.93 kcal Atomic # 7 Polarization: -55.71 SS G_CDS: 0.28 Total: -55.42 kcal Atomic # 8 Polarization: -36.57 SS G_CDS: -0.07 Total: -36.64 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Atomic # 16 Polarization: 2.63 SS G_CDS: -1.32 Total: 1.32 kcal Total: -68.20 5.23 -62.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771410866.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.401 kcal (2) G-P(sol) polarization free energy of solvation -68.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds