Wall clock time and date at job start Tue Mar 31 2020 01:27:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34858 * 120.33158 * 2 1 4 4 N 1.35589 * 121.81391 * 179.72445 * 3 2 1 5 5 H 0.97002 * 118.79858 * 180.26355 * 4 3 2 6 6 C 1.34311 * 122.40133 * 0.53376 * 4 3 2 7 7 C 1.38077 * 120.36177 * 359.47265 * 6 4 3 8 8 C 1.47138 * 120.88822 * 180.27675 * 7 6 4 9 9 O 1.21538 * 119.99777 * 180.02562 * 8 7 6 10 10 O 1.34777 * 120.00139 * 0.02562 * 8 7 6 11 11 C 1.45199 * 117.00052 * 179.97438 * 10 8 7 12 12 C 1.50699 * 109.47136 * 179.97438 * 11 10 8 13 13 O 1.21292 * 119.99933 * 359.97438 * 12 11 10 14 14 N 1.34778 * 120.00007 * 180.02562 * 12 11 10 15 15 C 1.37094 * 119.99894 * 180.02562 * 14 12 11 16 16 H 1.08000 * 120.00467 * 359.97438 * 15 14 12 17 17 C 1.38959 * 119.99903 * 179.97438 * 15 14 12 18 18 N 1.31405 * 119.99875 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00072 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46761 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47110 * 119.99889 * 19 17 15 22 22 H 1.48501 * 109.46989 * 240.00283 * 19 17 15 23 23 C 1.41679 * 120.32503 * 179.97438 * 2 1 3 24 24 O 1.22081 * 121.07053 * 359.97438 * 23 2 1 25 25 H 1.09010 * 109.47055 * 270.02360 * 1 2 3 26 26 H 1.09000 * 109.46916 * 30.01489 * 1 2 3 27 27 H 1.08994 * 109.47462 * 150.01940 * 1 2 3 28 28 H 1.07997 * 119.09045 * 0.02562 * 3 2 1 29 29 H 1.08002 * 119.82328 * 179.75510 * 6 4 3 30 30 H 1.08997 * 109.47194 * 299.99957 * 11 10 8 31 31 H 1.09004 * 109.46995 * 60.00324 * 11 10 8 32 32 H 0.97000 * 119.99833 * 359.97438 * 14 12 11 33 33 H 0.97002 * 120.00139 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1880 1.1640 0.0000 4 7 3.5435 1.1991 0.0055 5 1 3.9886 2.0609 0.0092 6 6 4.2923 0.0841 0.0008 7 6 3.6924 -1.1595 0.0009 8 6 4.5015 -2.3885 0.0018 9 8 3.9564 -3.4748 0.0013 10 8 5.8469 -2.3095 0.0031 11 6 6.5808 -3.5624 0.0045 12 6 8.0606 -3.2778 0.0053 13 8 8.4578 -2.1318 0.0042 14 7 8.9428 -4.2967 0.0061 15 6 10.2891 -4.0378 0.0073 16 1 10.6428 -3.0173 0.0071 17 6 11.1987 -5.0883 0.0087 18 7 10.7684 -6.3299 0.0093 19 14 13.0331 -4.7355 0.0095 20 1 13.2547 -3.2671 0.0079 21 1 13.6506 -5.3285 1.2229 22 1 13.6521 -5.3303 -1.2022 23 6 2.2223 -1.2229 0.0005 24 8 1.6379 -2.2947 0.0015 25 1 -0.3634 0.0004 1.0278 26 1 -0.3633 0.8899 -0.5141 27 1 -0.3634 -0.8901 -0.5135 28 1 1.6386 2.0938 0.0004 29 1 5.3696 0.1606 0.0015 30 1 6.3201 -4.1352 0.8945 31 1 6.3219 -4.1361 -0.8855 32 1 8.6252 -5.2133 0.0066 33 1 11.4033 -7.0633 0.0099 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000772260623.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:27:06 Heat of formation + Delta-G solvation = -125.391879 kcal Electronic energy + Delta-G solvation = -20713.765877 eV Core-core repulsion = 17126.306557 eV Total energy + Delta-G solvation = -3587.459320 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.094 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.15300 -39.69476 -38.10739 -37.78046 -35.69717 -33.97756 -33.69085 -31.84947 -31.34050 -28.28651 -27.66150 -25.01270 -24.04769 -23.14987 -20.91458 -19.51868 -19.02232 -18.08881 -17.86672 -17.02841 -16.34010 -16.18564 -15.96982 -15.36244 -15.26053 -14.51495 -14.16741 -13.94183 -13.82120 -13.59283 -13.46442 -12.93791 -12.83179 -12.74366 -12.21940 -12.15198 -11.87884 -11.61515 -11.14324 -10.38826 -10.33828 -10.26901 -10.25243 -9.80334 -9.60208 -9.41297 -8.49523 -8.25820 -8.06799 -6.48424 -3.90540 0.57910 1.09980 2.41373 2.76653 2.81904 3.12353 3.24136 3.31180 3.66373 3.77169 4.06420 4.14163 4.35571 4.55425 4.66423 4.91002 5.05184 5.17684 5.26004 5.35530 5.44279 5.62764 5.67476 5.79772 5.92107 6.03137 6.13224 6.37484 6.52772 6.79678 7.48888 7.93720 7.96456 8.18157 8.50599 9.08364 9.41760 9.91281 10.68914 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.044248 B = 0.003127 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.646891 B = 8951.883758 C = 9564.082396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.230 4.230 3 C 0.115 3.885 4 N -0.578 5.578 5 H 0.426 0.574 6 C 0.208 3.792 7 C -0.296 4.296 8 C 0.515 3.485 9 O -0.489 6.489 10 O -0.336 6.336 11 C 0.064 3.936 12 C 0.441 3.559 13 O -0.581 6.581 14 N -0.553 5.553 15 C -0.302 4.302 16 H 0.106 0.894 17 C 0.024 3.976 18 N -0.896 5.896 19 Si 0.933 3.067 20 H -0.267 1.267 21 H -0.280 1.280 22 H -0.280 1.280 23 C 0.413 3.587 24 O -0.475 6.475 25 H 0.069 0.931 26 H 0.064 0.936 27 H 0.076 0.924 28 H 0.167 0.833 29 H 0.189 0.811 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.395 0.605 33 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.609 16.929 -0.014 23.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.236 4.236 3 C -0.009 4.009 4 N -0.182 5.182 5 H 0.263 0.737 6 C 0.075 3.925 7 C -0.305 4.305 8 C 0.358 3.642 9 O -0.376 6.376 10 O -0.252 6.252 11 C -0.014 4.014 12 C 0.226 3.774 13 O -0.465 6.465 14 N -0.190 5.190 15 C -0.431 4.431 16 H 0.124 0.876 17 C -0.178 4.178 18 N -0.537 5.537 19 Si 0.760 3.240 20 H -0.191 1.191 21 H -0.206 1.206 22 H -0.206 1.206 23 C 0.298 3.702 24 O -0.355 6.355 25 H 0.088 0.912 26 H 0.083 0.917 27 H 0.095 0.905 28 H 0.184 0.816 29 H 0.206 0.794 30 H 0.104 0.896 31 H 0.104 0.896 32 H 0.229 0.771 33 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -15.733 16.573 -0.013 22.852 hybrid contribution 1.063 -0.229 0.011 1.087 sum -14.671 16.344 -0.002 21.962 Atomic orbital electron populations 1.20395 0.88659 1.03088 1.02503 1.21095 0.98402 0.93143 1.10990 1.21571 0.82541 1.00209 0.96625 1.40838 1.05965 1.09789 1.61599 0.73714 1.22717 0.98298 0.85229 0.86274 1.21526 0.95828 0.90379 1.22728 1.20295 0.80965 0.88794 0.74157 1.90893 1.72778 1.29024 1.44920 1.86516 1.18420 1.35925 1.84319 1.22683 0.91380 0.83688 1.03605 1.19338 0.85875 0.86498 0.85688 1.90521 1.79570 1.20841 1.55611 1.41721 1.06014 1.07554 1.63729 1.19760 0.80101 0.95123 1.48135 0.87596 1.25322 1.00952 0.94601 0.96957 1.69624 1.35933 0.98451 1.49655 0.85747 0.81618 0.78842 0.77804 1.19134 1.20632 1.20637 1.18026 0.86320 0.89346 0.76460 1.90818 1.71145 1.31707 1.41864 0.91231 0.91668 0.90502 0.81576 0.79399 0.89566 0.89570 0.77089 0.91663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.70 9.83 36.01 0.35 -0.35 16 2 C -0.23 -2.24 5.89 -104.51 -0.62 -2.86 16 3 C 0.12 0.60 10.73 -17.09 -0.18 0.42 16 4 N -0.58 -2.70 5.16 -12.73 -0.07 -2.77 16 5 H 0.43 0.16 8.87 -40.82 -0.36 -0.20 16 6 C 0.21 1.88 10.81 -16.53 -0.18 1.70 16 7 C -0.30 -4.30 6.05 -102.73 -0.62 -4.92 16 8 C 0.51 9.58 7.90 34.34 0.27 9.86 16 9 O -0.49 -10.76 15.36 -26.08 -0.40 -11.16 16 10 O -0.34 -6.42 9.03 -47.38 -0.43 -6.85 16 11 C 0.06 1.28 5.95 36.01 0.21 1.49 16 12 C 0.44 10.66 7.86 -10.99 -0.09 10.58 16 13 O -0.58 -15.73 16.08 -14.11 -0.23 -15.96 16 14 N -0.55 -14.11 5.29 -10.96 -0.06 -14.17 16 15 C -0.30 -8.33 9.68 -14.93 -0.14 -8.47 16 16 H 0.11 3.03 7.16 -52.49 -0.38 2.66 16 17 C 0.02 0.64 5.50 -17.47 -0.10 0.54 16 18 N -0.90 -24.27 13.05 55.50 0.72 -23.54 16 19 Si 0.93 20.66 29.55 -169.99 -5.02 15.64 16 20 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 21 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 22 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 23 C 0.41 6.29 6.95 -34.66 -0.24 6.05 16 24 O -0.48 -9.41 15.63 -15.19 -0.24 -9.65 16 25 H 0.07 0.50 8.14 -51.92 -0.42 0.08 16 26 H 0.06 0.31 8.08 -51.93 -0.42 -0.11 16 27 H 0.08 0.77 7.68 -51.93 -0.40 0.37 16 28 H 0.17 0.13 8.06 -52.49 -0.42 -0.30 16 29 H 0.19 1.50 7.62 -52.49 -0.40 1.10 16 30 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 31 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 32 H 0.40 9.67 7.90 -40.82 -0.32 9.35 16 33 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 305.72 15.07 4.61 4.61 Total: -1.00 -39.24 305.72 -5.54 -44.77 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -3.10 Total: 5.05 kcal Atomic # 6 Polarization: 15.36 SS G_CDS: -1.33 Total: 14.03 kcal Atomic # 7 Polarization: -41.08 SS G_CDS: 0.60 Total: -40.48 kcal Atomic # 8 Polarization: -42.33 SS G_CDS: -1.29 Total: -43.62 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -39.24 -5.54 -44.77 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772260623.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.617 kcal (2) G-P(sol) polarization free energy of solvation -39.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds