Wall clock time and date at job start Tue Mar 31 2020 01:55:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08995 * 109.47670 * 2 1 4 4 C 1.53006 * 109.47253 * 119.99922 * 2 1 3 5 5 S 1.81394 * 109.47158 * 295.00142 * 4 2 1 6 6 C 1.81398 * 103.00163 * 180.02562 * 5 4 2 7 7 C 1.50701 * 109.47126 * 179.97438 * 6 5 4 8 8 C 1.38235 * 119.99808 * 89.99763 * 7 6 5 9 9 C 1.38243 * 119.99602 * 179.97438 * 8 7 6 10 10 C 1.38231 * 120.00070 * 0.07188 * 9 8 7 11 11 C 1.38234 * 119.99892 * 359.90902 * 10 9 8 12 12 C 1.38230 * 119.99865 * 269.97508 * 7 6 5 13 13 C 1.50699 * 109.47252 * 239.99808 * 2 1 3 14 14 O 1.21206 * 120.00313 * 240.00609 * 13 2 1 15 15 O 1.34313 * 119.99722 * 60.00078 * 13 2 1 16 16 C 1.34925 * 116.99834 * 180.02562 * 15 13 2 17 17 H 1.08001 * 119.99707 * 359.97438 * 16 15 13 18 18 C 1.38759 * 119.99686 * 180.02562 * 16 15 13 19 19 N 1.31438 * 120.00240 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99635 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47102 * 59.99568 * 20 18 16 22 22 H 1.48501 * 109.46832 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47084 * 299.99805 * 20 18 16 24 24 H 1.08997 * 109.46787 * 59.99884 * 1 2 3 25 25 H 1.09000 * 109.47308 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46771 * 300.00563 * 1 2 3 27 27 H 1.09001 * 109.47149 * 174.99437 * 4 2 1 28 28 H 1.09006 * 109.47002 * 54.99584 * 4 2 1 29 29 H 1.08993 * 109.47581 * 59.99307 * 6 5 4 30 30 H 1.09001 * 109.46610 * 299.99232 * 6 5 4 31 31 H 1.08000 * 120.00616 * 359.70324 * 8 7 6 32 32 H 1.08001 * 119.99556 * 179.97438 * 9 8 7 33 33 H 1.07997 * 119.99633 * 179.97438 * 10 9 8 34 34 H 1.07999 * 119.99751 * 180.02562 * 11 10 9 35 35 H 1.08001 * 120.00371 * 0.02562 * 12 7 6 36 36 H 0.96999 * 119.99826 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 16 1.5601 0.2155 2.7266 6 6 2.2431 -0.7797 4.0807 7 6 1.9235 -0.1219 5.3983 8 6 0.7540 -0.4393 6.0635 9 6 0.4611 0.1638 7.2725 10 6 1.3369 1.0852 7.8155 11 6 2.5066 1.4021 7.1504 12 6 2.8000 0.7984 5.9420 13 6 2.0323 -0.7104 -1.2304 14 8 2.7291 -1.6960 -1.1192 15 8 1.7078 -0.2515 -2.4503 16 6 2.1898 -0.9341 -3.5097 17 1 2.8069 -1.8068 -3.3544 18 6 1.8936 -0.5142 -4.7986 19 7 1.1430 0.5481 -4.9875 20 14 2.5615 -1.4588 -6.2652 21 1 2.0654 -2.8578 -6.2206 22 1 2.1037 -0.8115 -7.5209 23 1 4.0458 -1.4583 -6.2201 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5140 0.8900 27 1 3.1263 -0.7996 1.2056 28 1 1.6053 -1.7198 1.2952 29 1 3.3243 -0.8562 3.9660 30 1 1.8036 -1.7769 4.0560 31 1 0.0670 -1.1550 5.6367 32 1 -0.4528 -0.0838 7.7920 33 1 1.1078 1.5565 8.7597 34 1 3.1910 2.1217 7.5748 35 1 3.7137 1.0463 5.4222 36 1 0.9362 0.8418 -5.8886 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000773224059.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:55:01 Heat of formation + Delta-G solvation = -88.503314 kcal Electronic energy + Delta-G solvation = -18246.412734 eV Core-core repulsion = 15206.846236 eV Total energy + Delta-G solvation = -3039.566497 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.092 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.18038 -40.07470 -37.59872 -35.57863 -34.29426 -33.78052 -31.77734 -28.81340 -27.82024 -27.60659 -24.89088 -23.46688 -22.37878 -21.18364 -19.90758 -18.67956 -17.79107 -17.14173 -16.84609 -16.71992 -16.26205 -16.22851 -16.06836 -15.47525 -15.01192 -14.61224 -14.32930 -14.12836 -13.90009 -13.70646 -13.64219 -13.24329 -13.10059 -13.02359 -12.53113 -12.44442 -12.28000 -12.17415 -12.03717 -11.93382 -11.89237 -11.12672 -10.94416 -10.71568 -9.81660 -9.60468 -8.68334 -8.55531 -6.35979 0.00067 0.51522 0.88359 1.28695 1.33490 1.49458 1.55766 1.61366 2.11844 2.78278 2.95446 2.96018 3.51747 3.68059 3.76451 3.83548 4.12934 4.16791 4.26110 4.30983 4.42584 4.52208 4.59912 4.65081 4.65446 4.74710 4.87221 4.97226 5.08012 5.14382 5.17023 5.24407 5.56514 5.63118 5.64797 5.80685 6.10526 6.60732 6.89038 7.72957 8.64732 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.056067 B = 0.002742 C = 0.002708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.281477 B =10209.294765 C =10337.834265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.051 4.051 3 H 0.111 0.889 4 C -0.061 4.061 5 S -0.243 6.243 6 C -0.044 4.044 7 C -0.087 4.087 8 C -0.113 4.113 9 C -0.127 4.127 10 C -0.120 4.120 11 C -0.128 4.128 12 C -0.115 4.115 13 C 0.403 3.597 14 O -0.582 6.582 15 O -0.238 6.238 16 C -0.424 4.424 17 H 0.082 0.918 18 C -0.003 4.003 19 N -0.901 5.901 20 Si 1.017 2.983 21 H -0.261 1.261 22 H -0.259 1.259 23 H -0.262 1.262 24 H 0.056 0.944 25 H 0.057 0.943 26 H 0.096 0.904 27 H 0.080 0.920 28 H 0.085 0.915 29 H 0.096 0.904 30 H 0.099 0.901 31 H 0.131 0.869 32 H 0.143 0.857 33 H 0.145 0.855 34 H 0.142 0.858 35 H 0.128 0.872 36 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.693 0.821 23.204 23.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.071 4.071 3 H 0.129 0.871 4 C -0.209 4.209 5 S -0.013 6.013 6 C -0.191 4.191 7 C -0.088 4.088 8 C -0.133 4.133 9 C -0.145 4.145 10 C -0.139 4.139 11 C -0.146 4.146 12 C -0.135 4.135 13 C 0.250 3.750 14 O -0.480 6.480 15 O -0.145 6.145 16 C -0.500 4.500 17 H 0.099 0.901 18 C -0.204 4.204 19 N -0.538 5.538 20 Si 0.836 3.164 21 H -0.186 1.186 22 H -0.183 1.183 23 H -0.186 1.186 24 H 0.076 0.924 25 H 0.077 0.923 26 H 0.115 0.885 27 H 0.099 0.901 28 H 0.104 0.896 29 H 0.115 0.885 30 H 0.117 0.883 31 H 0.148 0.852 32 H 0.161 0.839 33 H 0.163 0.837 34 H 0.160 0.840 35 H 0.146 0.854 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.184 1.644 23.053 23.142 hybrid contribution 1.092 -1.555 -1.036 2.164 sum -0.092 0.089 22.017 22.018 Atomic orbital electron populations 1.21734 0.90711 1.02939 1.03596 1.20519 0.99267 1.00059 0.87225 0.87130 1.23074 1.03884 1.00885 0.93086 1.86891 1.75882 1.38741 0.99806 1.22361 1.04193 1.00546 0.92037 1.19305 0.96411 0.98885 0.94226 1.21281 0.96020 1.00336 0.95675 1.21453 1.00494 0.96936 0.95650 1.21549 0.94140 0.97487 1.00732 1.21442 0.98038 1.00116 0.94997 1.21273 0.99755 0.96004 0.96454 1.24159 0.80132 0.84310 0.86437 1.90506 1.40469 1.29133 1.87907 1.83897 1.64437 1.52382 1.13824 1.21401 1.33499 1.11798 0.83258 0.90059 1.26545 0.95968 0.97340 1.00512 1.70068 1.35400 1.24152 1.24183 0.84695 0.78833 0.77904 0.74993 1.18574 1.18321 1.18610 0.92438 0.92345 0.88496 0.90082 0.89639 0.88545 0.88251 0.85152 0.83901 0.83712 0.84010 0.85380 0.91118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.47 8.95 71.98 0.64 -3.83 16 2 C -0.05 -1.90 2.83 -11.54 -0.03 -1.94 16 3 H 0.11 3.99 8.14 -2.39 -0.02 3.97 16 4 C -0.06 -1.94 4.73 71.98 0.34 -1.60 16 5 S -0.24 -6.35 20.53 -56.49 -1.16 -7.51 16 6 C -0.04 -0.91 6.07 71.24 0.43 -0.48 16 7 C -0.09 -1.71 5.14 -19.87 -0.10 -1.81 16 8 C -0.11 -2.02 9.70 22.27 0.22 -1.80 16 9 C -0.13 -1.90 10.05 22.27 0.22 -1.68 16 10 C -0.12 -1.67 10.05 22.27 0.22 -1.44 16 11 C -0.13 -1.95 10.05 22.27 0.22 -1.72 16 12 C -0.11 -2.10 9.70 22.27 0.22 -1.88 16 13 C 0.40 20.53 7.20 71.24 0.51 21.04 16 14 O -0.58 -31.97 15.16 20.79 0.32 -31.65 16 15 O -0.24 -14.15 9.65 14.80 0.14 -14.01 16 16 C -0.42 -25.99 9.65 67.94 0.66 -25.33 16 17 H 0.08 5.04 6.86 -2.91 -0.02 5.02 16 18 C 0.00 -0.18 5.49 84.88 0.47 0.29 16 19 N -0.90 -53.61 13.67 21.63 0.30 -53.32 16 20 Si 1.02 43.66 29.55 68.60 2.03 45.68 16 21 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 22 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 23 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 24 H 0.06 2.14 8.11 -2.39 -0.02 2.12 16 25 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 26 H 0.10 2.73 7.14 -2.38 -0.02 2.71 16 27 H 0.08 2.69 7.96 -2.39 -0.02 2.67 16 28 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 29 H 0.10 1.85 8.08 -2.39 -0.02 1.83 16 30 H 0.10 1.86 8.09 -2.39 -0.02 1.84 16 31 H 0.13 2.06 8.06 -2.91 -0.02 2.04 16 32 H 0.14 1.46 8.06 -2.91 -0.02 1.44 16 33 H 0.15 1.25 8.06 -2.91 -0.02 1.23 16 34 H 0.14 1.52 8.06 -2.91 -0.02 1.49 16 35 H 0.13 2.13 8.06 -2.91 -0.02 2.10 16 36 H 0.28 15.08 8.31 -92.71 -0.77 14.31 16 Total: -1.00 -72.00 328.73 6.70 -65.29 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: 1.06 Total: 17.69 kcal Atomic # 6 Polarization: -26.20 SS G_CDS: 4.02 Total: -22.18 kcal Atomic # 7 Polarization: -53.61 SS G_CDS: 0.30 Total: -53.32 kcal Atomic # 8 Polarization: -46.12 SS G_CDS: 0.46 Total: -45.66 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.68 kcal Atomic # 16 Polarization: -6.35 SS G_CDS: -1.16 Total: -7.51 kcal Total: -72.00 6.70 -65.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000773224059.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.208 kcal (2) G-P(sol) polarization free energy of solvation -71.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds