Wall clock time and date at job start Tue Mar 31 2020 01:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86803 * 119.99611 * 2 1 4 4 H 1.48494 * 109.47533 * 270.00168 * 3 2 1 5 5 H 1.48498 * 109.47096 * 30.00462 * 3 2 1 6 6 H 1.48500 * 109.46959 * 149.99918 * 3 2 1 7 7 C 1.38948 * 120.00492 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00263 * 179.97438 * 7 2 1 9 9 N 1.37097 * 119.99682 * 359.97438 * 7 2 1 10 10 C 1.34779 * 119.99944 * 179.97438 * 9 7 2 11 11 O 1.21297 * 119.99983 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00037 * 180.02562 * 10 9 7 13 13 O 1.45206 * 109.47021 * 180.02562 * 12 10 9 14 14 C 1.34778 * 117.00148 * 179.97438 * 13 12 10 15 15 O 1.21513 * 119.99601 * 0.02562 * 14 13 12 16 16 C 1.47373 * 120.00335 * 180.02562 * 14 13 12 17 17 C 1.36884 * 126.95155 * 179.71518 * 16 14 13 18 18 C 1.41257 * 103.83690 * 179.87151 * 17 16 14 19 19 C 1.50703 * 126.69981 * 180.13297 * 18 17 16 20 20 C 1.53012 * 117.49814 * 343.90084 * 19 18 17 21 21 C 1.53002 * 59.99873 * 252.51317 * 20 19 18 22 22 N 1.30121 * 106.59927 * 0.39223 * 18 17 16 23 23 O 1.20878 * 112.00011 * 359.74391 * 22 18 17 24 24 H 0.97002 * 120.00294 * 359.97438 * 1 2 3 25 25 H 0.96996 * 120.00211 * 0.02562 * 9 7 2 26 26 H 1.09000 * 109.47247 * 60.00371 * 12 10 9 27 27 H 1.09001 * 109.47358 * 299.99798 * 12 10 9 28 28 H 1.07997 * 128.07997 * 359.97367 * 17 16 14 29 29 H 1.08995 * 115.54922 * 129.61012 * 19 18 17 30 30 H 1.09002 * 117.49464 * 0.02562 * 20 19 18 31 31 H 1.09001 * 117.49446 * 145.01570 * 20 19 18 32 32 H 1.09007 * 117.49176 * 252.50849 * 21 20 19 33 33 H 1.08997 * 117.51707 * 107.48987 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4955 2.0466 -1.4000 5 1 1.4454 2.6527 0.7001 6 1 3.5455 1.4403 0.7001 7 6 2.0089 -1.2033 -0.0005 8 1 3.0890 -1.2032 -0.0010 9 7 1.3235 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0016 11 8 3.2104 -3.5577 -0.0021 12 6 1.2440 -4.8629 -0.0022 13 8 2.1876 -5.9665 -0.0027 14 6 1.6726 -7.2120 -0.0027 15 8 0.4680 -7.3712 -0.0028 16 6 2.5704 -8.3807 -0.0026 17 6 2.2042 -9.6996 0.0028 18 6 3.4354 -10.3921 -0.0029 19 6 3.6280 -11.8868 -0.0032 20 6 2.4268 -12.7540 0.3794 21 6 3.6010 -12.6028 1.3487 22 7 4.3707 -9.4875 -0.0022 23 8 3.9170 -8.3671 -0.0021 24 1 -0.4851 0.8400 0.0004 25 1 0.3535 -2.3906 -0.0005 26 1 0.6170 -4.9201 -0.8920 27 1 0.6177 -4.9213 0.8880 28 1 1.2069 -10.1140 0.0083 29 1 4.3062 -12.2732 -0.7640 30 1 1.4972 -12.2434 0.6309 31 1 2.3146 -13.7111 -0.1299 32 1 4.2612 -13.4607 1.4771 33 1 3.4443 -11.9929 2.2383 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000799580551.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:15:58 Heat of formation + Delta-G solvation = -25.576873 kcal Electronic energy + Delta-G solvation = -20391.916735 eV Core-core repulsion = 16808.785718 eV Total energy + Delta-G solvation = -3583.131017 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.094 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -45.28673 -40.39689 -38.20189 -38.01694 -36.38836 -34.03316 -33.64628 -32.38069 -31.40362 -28.62079 -25.27937 -25.02034 -24.16162 -22.90157 -22.26661 -20.35150 -19.65845 -18.55861 -18.11681 -18.02218 -16.97938 -16.54795 -16.36765 -15.96300 -15.40618 -14.87266 -14.59635 -14.12787 -14.06073 -13.99558 -13.20387 -12.57341 -12.47071 -12.30430 -12.05242 -11.97444 -11.63675 -11.57070 -11.14978 -11.01552 -10.88398 -10.60708 -10.44620 -10.31080 -10.23290 -9.97353 -9.62338 -8.56495 -8.10404 -6.51709 -3.93731 0.41251 1.65922 2.03821 2.51851 2.87683 3.12726 3.19290 3.23410 3.29653 3.61262 3.70239 4.06961 4.22309 4.33535 4.49655 4.58166 4.60480 4.84579 4.92847 5.04836 5.12263 5.17784 5.34966 5.41249 5.50998 5.59581 5.60215 5.63026 5.96251 6.26474 7.40370 7.46682 7.83089 7.91900 8.45867 9.05361 9.36501 9.86212 10.65418 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.055066 B = 0.002764 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.362631 B =10128.767791 C =10538.932815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.025 3.975 3 Si 0.934 3.066 4 H -0.276 1.276 5 H -0.283 1.283 6 H -0.268 1.268 7 C -0.302 4.302 8 H 0.107 0.893 9 N -0.551 5.551 10 C 0.437 3.563 11 O -0.572 6.572 12 C 0.060 3.940 13 O -0.308 6.308 14 C 0.552 3.448 15 O -0.482 6.482 16 C -0.053 4.053 17 C -0.141 4.141 18 C 0.037 3.963 19 C -0.088 4.088 20 C -0.163 4.163 21 C -0.162 4.162 22 N -0.332 5.332 23 O 0.146 5.854 24 H 0.274 0.726 25 H 0.395 0.605 26 H 0.093 0.907 27 H 0.093 0.907 28 H 0.187 0.813 29 H 0.127 0.873 30 H 0.101 0.899 31 H 0.106 0.894 32 H 0.105 0.895 33 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.397 -22.043 0.662 22.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.177 4.177 3 Si 0.761 3.239 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.431 4.431 8 H 0.125 0.875 9 N -0.189 5.189 10 C 0.221 3.779 11 O -0.456 6.456 12 C -0.017 4.017 13 O -0.221 6.221 14 C 0.393 3.607 15 O -0.370 6.370 16 C -0.118 4.118 17 C -0.163 4.163 18 C -0.120 4.120 19 C -0.107 4.107 20 C -0.200 4.200 21 C -0.200 4.200 22 N -0.029 5.029 23 O 0.068 5.932 24 H 0.084 0.916 25 H 0.229 0.771 26 H 0.111 0.889 27 H 0.111 0.889 28 H 0.204 0.796 29 H 0.145 0.855 30 H 0.120 0.880 31 H 0.125 0.875 32 H 0.123 0.877 33 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 2.051 -21.945 0.663 22.051 hybrid contribution -1.215 0.757 -0.060 1.433 sum 0.836 -21.188 0.603 21.213 Atomic orbital electron populations 1.69609 1.06005 1.28533 1.49595 1.25314 0.95695 0.99890 0.96831 0.85790 0.79251 0.80356 0.78525 1.20236 1.20811 1.19239 1.19736 0.93520 0.81673 1.48190 0.87543 1.41685 1.09376 1.04012 1.63779 1.19235 0.88357 0.83952 0.86322 1.90593 1.13296 1.86637 1.55051 1.22936 0.90645 0.84058 1.04062 1.86691 1.39968 1.13301 1.82150 1.19149 0.85245 0.82481 0.73830 1.90932 1.13835 1.86419 1.45827 1.22864 0.84435 0.94296 1.10157 1.22774 1.01061 0.90024 1.02395 1.22648 0.88574 0.96557 1.04174 1.20122 1.04334 0.84902 1.01343 1.23079 0.93091 1.01009 1.02814 1.23061 1.01582 1.02370 0.92973 1.73778 1.23250 0.90072 1.15782 1.85187 1.18517 1.23807 1.65696 0.91599 0.77120 0.88895 0.88913 0.79569 0.85489 0.88016 0.87530 0.87673 0.88300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.77 13.05 55.50 0.72 -23.04 16 2 C 0.03 0.66 5.50 -17.47 -0.10 0.56 16 3 Si 0.93 20.57 29.55 -169.99 -5.02 15.55 16 4 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 5 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 6 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 7 C -0.30 -8.25 9.68 -14.93 -0.14 -8.39 16 8 H 0.11 3.04 7.16 -52.48 -0.38 2.67 16 9 N -0.55 -13.67 5.29 -10.96 -0.06 -13.73 16 10 C 0.44 10.34 7.86 -10.99 -0.09 10.25 16 11 O -0.57 -15.85 16.08 -14.12 -0.23 -16.07 16 12 C 0.06 1.10 5.96 36.01 0.21 1.31 16 13 O -0.31 -5.67 9.77 -47.71 -0.47 -6.14 16 14 C 0.55 8.60 7.96 34.45 0.27 8.88 16 15 O -0.48 -7.75 16.71 -19.27 -0.32 -8.07 16 16 C -0.05 -0.73 7.37 -36.36 -0.27 -0.99 16 17 C -0.14 -1.53 10.26 -38.93 -0.40 -1.93 16 18 C 0.04 0.41 6.94 -82.17 -0.57 -0.16 16 19 C -0.09 -0.69 6.33 -91.76 -0.58 -1.27 16 20 C -0.16 -0.90 10.04 -26.72 -0.27 -1.17 16 21 C -0.16 -1.02 10.23 -26.73 -0.27 -1.30 16 22 N -0.33 -4.56 12.04 33.52 0.40 -4.16 16 23 O 0.15 2.16 11.23 15.49 0.17 2.34 16 24 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 25 H 0.40 9.21 7.90 -40.82 -0.32 8.88 16 26 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 27 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 28 H 0.19 1.51 7.61 -52.49 -0.40 1.11 16 29 H 0.13 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.10 0.53 7.33 -51.93 -0.38 0.15 16 31 H 0.11 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 310.31 15.07 4.68 4.68 Total: -1.00 -31.94 310.31 -5.47 -37.41 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -3.15 Total: 5.45 kcal Atomic # 6 Polarization: 7.99 SS G_CDS: -2.20 Total: 5.79 kcal Atomic # 7 Polarization: -42.00 SS G_CDS: 1.07 Total: -40.93 kcal Atomic # 8 Polarization: -27.10 SS G_CDS: -0.84 Total: -27.94 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -31.94 -5.47 -37.41 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799580551.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.830 kcal (2) G-P(sol) polarization free energy of solvation -31.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds