Wall clock time and date at job start Tue Mar 31 2020 01:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86803 * 119.99611 * 2 1 4 4 H 1.48494 * 109.47533 * 270.00168 * 3 2 1 5 5 H 1.48498 * 109.47096 * 30.00462 * 3 2 1 6 6 H 1.48500 * 109.46959 * 149.99918 * 3 2 1 7 7 C 1.38948 * 120.00492 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00263 * 179.97438 * 7 2 1 9 9 N 1.37097 * 119.99682 * 359.97438 * 7 2 1 10 10 C 1.34779 * 119.99944 * 179.97438 * 9 7 2 11 11 O 1.21297 * 119.99983 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00037 * 180.02562 * 10 9 7 13 13 O 1.45206 * 109.47021 * 180.02562 * 12 10 9 14 14 C 1.34778 * 117.00148 * 179.97438 * 13 12 10 15 15 O 1.21513 * 119.99601 * 0.02562 * 14 13 12 16 16 C 1.47373 * 120.00335 * 180.02562 * 14 13 12 17 17 C 1.36884 * 126.95155 * 179.71518 * 16 14 13 18 18 C 1.41257 * 103.83690 * 179.87151 * 17 16 14 19 19 C 1.50703 * 126.69981 * 180.13297 * 18 17 16 20 20 C 1.53012 * 117.49814 * 343.90084 * 19 18 17 21 21 C 1.53002 * 59.99873 * 252.51317 * 20 19 18 22 22 N 1.30121 * 106.59927 * 0.39223 * 18 17 16 23 23 O 1.20878 * 112.00011 * 359.74391 * 22 18 17 24 24 H 0.97002 * 120.00294 * 359.97438 * 1 2 3 25 25 H 0.96996 * 120.00211 * 0.02562 * 9 7 2 26 26 H 1.09000 * 109.47247 * 60.00371 * 12 10 9 27 27 H 1.09001 * 109.47358 * 299.99798 * 12 10 9 28 28 H 1.07997 * 128.07997 * 359.97367 * 17 16 14 29 29 H 1.08995 * 115.54922 * 129.61012 * 19 18 17 30 30 H 1.09002 * 117.49464 * 0.02562 * 20 19 18 31 31 H 1.09001 * 117.49446 * 145.01570 * 20 19 18 32 32 H 1.09007 * 117.49176 * 252.50849 * 21 20 19 33 33 H 1.08997 * 117.51707 * 107.48987 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4955 2.0466 -1.4000 5 1 1.4454 2.6527 0.7001 6 1 3.5455 1.4403 0.7001 7 6 2.0089 -1.2033 -0.0005 8 1 3.0890 -1.2032 -0.0010 9 7 1.3235 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0016 11 8 3.2104 -3.5577 -0.0021 12 6 1.2440 -4.8629 -0.0022 13 8 2.1876 -5.9665 -0.0027 14 6 1.6726 -7.2120 -0.0027 15 8 0.4680 -7.3712 -0.0028 16 6 2.5704 -8.3807 -0.0026 17 6 2.2042 -9.6996 0.0028 18 6 3.4354 -10.3921 -0.0029 19 6 3.6280 -11.8868 -0.0032 20 6 2.4268 -12.7540 0.3794 21 6 3.6010 -12.6028 1.3487 22 7 4.3707 -9.4875 -0.0022 23 8 3.9170 -8.3671 -0.0021 24 1 -0.4851 0.8400 0.0004 25 1 0.3535 -2.3906 -0.0005 26 1 0.6170 -4.9201 -0.8920 27 1 0.6177 -4.9213 0.8880 28 1 1.2069 -10.1140 0.0083 29 1 4.3062 -12.2732 -0.7640 30 1 1.4972 -12.2434 0.6309 31 1 2.3146 -13.7111 -0.1299 32 1 4.2612 -13.4607 1.4771 33 1 3.4443 -11.9929 2.2383 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000799580551.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:15:58 Heat of formation + Delta-G solvation = -45.790556 kcal Electronic energy + Delta-G solvation = -20392.793266 eV Core-core repulsion = 16808.785718 eV Total energy + Delta-G solvation = -3584.007548 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.094 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -46.25002 -41.73238 -40.05871 -38.60219 -37.77705 -36.05071 -34.51900 -33.48417 -33.32950 -30.20104 -26.92810 -25.85409 -25.52495 -23.58688 -22.96567 -21.51784 -21.36438 -20.09626 -19.57080 -19.04005 -18.32227 -17.81671 -17.72834 -17.22653 -16.66053 -16.21923 -15.81406 -15.76342 -15.43313 -14.99427 -14.75092 -14.07984 -13.88734 -13.56133 -13.23576 -12.99197 -12.94811 -12.47945 -12.40729 -12.30399 -12.20534 -12.11605 -12.01308 -11.58612 -11.42101 -11.12654 -10.80702 -10.54133 -10.12053 -8.52699 -6.03044 -0.65547 0.77620 0.84550 1.35440 1.37754 1.43492 1.55859 1.77109 1.86422 2.29619 2.58460 2.86873 3.03216 3.12964 3.38178 3.61263 3.70307 3.87740 3.96283 4.01976 4.13152 4.13675 4.21366 4.35065 4.68078 4.79336 4.91231 4.98558 5.08957 5.23165 5.37256 5.87664 6.16312 6.48327 6.84020 7.02953 7.39188 7.93399 8.64154 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.055066 B = 0.002764 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.362631 B =10128.767791 C =10538.932815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.007 4.007 3 Si 0.997 3.003 4 H -0.269 1.269 5 H -0.269 1.269 6 H -0.272 1.272 7 C -0.338 4.338 8 H 0.083 0.917 9 N -0.555 5.555 10 C 0.434 3.566 11 O -0.619 6.619 12 C 0.071 3.929 13 O -0.333 6.333 14 C 0.559 3.441 15 O -0.486 6.486 16 C -0.076 4.076 17 C -0.115 4.115 18 C 0.049 3.951 19 C -0.112 4.112 20 C -0.143 4.143 21 C -0.162 4.162 22 N -0.355 5.355 23 O 0.112 5.888 24 H 0.281 0.719 25 H 0.402 0.598 26 H 0.120 0.880 27 H 0.120 0.880 28 H 0.218 0.782 29 H 0.135 0.865 30 H 0.108 0.892 31 H 0.128 0.872 32 H 0.121 0.879 33 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.816 -23.661 0.676 23.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.208 4.208 3 Si 0.820 3.180 4 H -0.195 1.195 5 H -0.193 1.193 6 H -0.197 1.197 7 C -0.467 4.467 8 H 0.101 0.899 9 N -0.193 5.193 10 C 0.221 3.779 11 O -0.506 6.506 12 C -0.006 4.006 13 O -0.247 6.247 14 C 0.402 3.598 15 O -0.374 6.374 16 C -0.140 4.140 17 C -0.136 4.136 18 C -0.109 4.109 19 C -0.130 4.130 20 C -0.181 4.181 21 C -0.200 4.200 22 N -0.057 5.057 23 O 0.039 5.961 24 H 0.091 0.909 25 H 0.237 0.763 26 H 0.138 0.862 27 H 0.137 0.863 28 H 0.235 0.765 29 H 0.153 0.847 30 H 0.126 0.874 31 H 0.146 0.854 32 H 0.140 0.860 33 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 0.784 -23.543 0.677 23.566 hybrid contribution -0.845 1.114 -0.055 1.399 sum -0.061 -22.430 0.622 22.438 Atomic orbital electron populations 1.69658 1.06851 1.29754 1.49065 1.26093 0.96591 1.02486 0.95647 0.84876 0.77895 0.76477 0.78793 1.19466 1.19339 1.19700 1.19700 0.92913 0.83398 1.50696 0.89920 1.41706 1.09620 1.04041 1.63933 1.20103 0.88070 0.85449 0.84299 1.90559 1.15635 1.87676 1.56748 1.22751 0.89731 0.81476 1.06598 1.86670 1.40769 1.14404 1.82884 1.19236 0.85508 0.81849 0.73238 1.90918 1.13927 1.86342 1.46242 1.22810 0.84280 0.94523 1.12370 1.23213 1.02299 0.88570 0.99482 1.23249 0.88015 0.97849 1.01760 1.20343 1.06848 0.82987 1.02870 1.23245 0.92387 1.01118 1.01302 1.23157 1.02583 1.02330 0.91898 1.73784 1.24380 0.90296 1.17238 1.85163 1.19083 1.24614 1.67256 0.90917 0.76343 0.86242 0.86252 0.76511 0.84682 0.87412 0.85369 0.86047 0.89222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.88 13.05 21.66 0.28 -47.60 16 2 C -0.01 -0.38 5.50 84.93 0.47 0.09 16 3 Si 1.00 41.94 29.55 68.60 2.03 43.96 16 4 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 5 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 6 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 7 C -0.34 -18.88 9.68 84.04 0.81 -18.07 16 8 H 0.08 4.93 7.16 -2.91 -0.02 4.91 16 9 N -0.56 -28.04 5.29 -306.98 -1.62 -29.66 16 10 C 0.43 20.96 7.86 87.66 0.69 21.65 16 11 O -0.62 -35.61 16.08 15.72 0.25 -35.36 16 12 C 0.07 2.54 5.96 71.24 0.42 2.97 16 13 O -0.33 -12.34 9.77 -50.20 -0.49 -12.83 16 14 C 0.56 17.13 7.96 70.23 0.56 17.69 16 15 O -0.49 -14.82 16.71 19.79 0.33 -14.49 16 16 C -0.08 -2.06 7.37 24.36 0.18 -1.88 16 17 C -0.11 -2.27 10.26 22.69 0.23 -2.04 16 18 C 0.05 1.01 6.94 43.56 0.30 1.31 16 19 C -0.11 -1.49 6.33 -11.53 -0.07 -1.56 16 20 C -0.14 -1.08 10.04 30.60 0.31 -0.77 16 21 C -0.16 -1.64 10.23 30.60 0.31 -1.33 16 22 N -0.36 -9.81 12.04 -48.85 -0.59 -10.39 16 23 O 0.11 3.41 11.23 65.60 0.74 4.14 16 24 H 0.28 13.74 8.31 -92.71 -0.77 12.97 16 25 H 0.40 18.83 7.90 -92.71 -0.73 18.09 16 26 H 0.12 3.65 8.14 -2.39 -0.02 3.63 16 27 H 0.12 3.64 8.14 -2.39 -0.02 3.62 16 28 H 0.22 2.77 7.61 -2.91 -0.02 2.74 16 29 H 0.14 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.11 0.70 7.33 -2.39 -0.02 0.69 16 31 H 0.13 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.12 0.83 8.14 -2.38 -0.02 0.81 16 33 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -70.32 310.31 5.58 -64.73 By element: Atomic # 1 Polarization: 18.99 SS G_CDS: 0.44 Total: 19.43 kcal Atomic # 6 Polarization: 13.85 SS G_CDS: 4.21 Total: 18.06 kcal Atomic # 7 Polarization: -85.73 SS G_CDS: -1.93 Total: -87.65 kcal Atomic # 8 Polarization: -59.36 SS G_CDS: 0.83 Total: -58.53 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.96 kcal Total: -70.32 5.58 -64.73 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799580551.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.943 kcal (2) G-P(sol) polarization free energy of solvation -70.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds