Wall clock time and date at job start Tue Mar 31 2020 01:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38372 * 119.84555 * 2 1 4 4 C 1.37947 * 120.14939 * 179.97438 * 3 2 1 5 5 C 1.39626 * 119.84448 * 0.26453 * 4 3 2 6 6 C 1.47733 * 120.14512 * 179.70064 * 5 4 3 7 7 O 1.21468 * 120.00116 * 359.97438 * 6 5 4 8 8 O 1.34709 * 119.99568 * 179.97438 * 6 5 4 9 9 C 1.45202 * 116.99855 * 179.97438 * 8 6 5 10 10 C 1.53000 * 109.47467 * 179.97438 * 9 8 6 11 11 C 1.52992 * 109.47277 * 179.97438 * 10 9 8 12 12 S 1.81001 * 109.47305 * 180.02562 * 11 10 9 13 13 C 1.76196 * 100.00133 * 179.97438 * 12 11 10 14 14 H 1.07999 * 120.00430 * 359.97438 * 13 12 11 15 15 C 1.38799 * 120.00066 * 179.97438 * 13 12 11 16 16 N 1.31638 * 119.99706 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 120.00346 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.46788 * 59.99998 * 17 15 13 19 19 H 1.48498 * 109.47213 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.46940 * 300.00460 * 17 15 13 21 21 C 1.39630 * 119.70471 * 359.43966 * 5 4 3 22 22 C 1.37944 * 119.84125 * 0.57764 * 21 5 4 23 23 H 1.09003 * 109.47272 * 90.00406 * 1 2 3 24 24 H 1.08998 * 109.47515 * 209.99858 * 1 2 3 25 25 H 1.08999 * 109.47649 * 330.00542 * 1 2 3 26 26 H 1.07999 * 119.92634 * 359.97438 * 3 2 1 27 27 H 1.08002 * 120.07327 * 179.97438 * 4 3 2 28 28 H 1.09001 * 109.47188 * 299.99648 * 9 8 6 29 29 H 1.09001 * 109.47428 * 59.99501 * 9 8 6 30 30 H 1.09001 * 109.46964 * 300.00195 * 10 9 8 31 31 H 1.09010 * 109.46714 * 59.99849 * 10 9 8 32 32 H 1.09009 * 109.47286 * 299.99820 * 11 10 9 33 33 H 1.09001 * 109.47367 * 60.00064 * 11 10 9 34 34 H 0.97008 * 119.99721 * 180.02562 * 16 15 13 35 35 H 1.07997 * 120.07814 * 180.28070 * 21 5 4 36 36 H 1.08003 * 119.91752 * 179.68020 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1956 1.2002 0.0000 4 6 3.5750 1.2075 0.0005 5 6 4.2763 0.0001 -0.0045 6 6 5.7536 0.0002 -0.0107 7 8 6.3609 1.0522 -0.0118 8 8 6.4271 -1.1664 -0.0150 9 6 7.8771 -1.0903 -0.0215 10 6 8.4620 -2.5041 -0.0251 11 6 9.9898 -2.4240 -0.0326 12 16 10.6818 -4.0965 -0.0375 13 6 12.4021 -3.7159 -0.0465 14 1 12.7274 -2.6861 -0.0479 15 6 13.3394 -4.7396 -0.0518 16 7 12.9429 -5.9949 -0.0506 17 14 15.1633 -4.3362 -0.0620 18 1 15.5021 -3.5458 1.1487 19 1 15.9490 -5.5963 -0.0658 20 1 15.4886 -3.5457 -1.2763 21 6 3.5751 -1.2073 0.0018 22 6 2.1956 -1.2000 0.0009 23 1 -0.3634 -0.0001 -1.0277 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3634 0.8900 0.5137 26 1 1.6518 2.1333 -0.0004 27 1 4.1113 2.1450 0.0001 28 1 8.2090 -0.5573 -0.9124 29 1 8.2172 -0.5591 0.8675 30 1 8.1301 -3.0369 0.8661 31 1 8.1220 -3.0357 -0.9140 32 1 10.3214 -1.8914 -0.9240 33 1 10.3302 -1.8923 0.8560 34 1 13.5980 -6.7104 -0.0539 35 1 4.1114 -2.1447 0.0025 36 1 1.6520 -2.1332 0.0005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805338025.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:20:38 Heat of formation + Delta-G solvation = -85.514980 kcal Electronic energy + Delta-G solvation = -17825.870398 eV Core-core repulsion = 14786.433484 eV Total energy + Delta-G solvation = -3039.436914 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.092 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.65450 -39.19601 -36.65836 -33.66595 -33.12421 -32.44126 -31.35642 -28.24928 -26.41861 -25.43741 -23.14099 -22.98041 -21.34613 -20.80699 -18.16622 -17.41239 -17.11153 -16.58374 -15.65281 -15.41461 -14.87130 -14.81240 -14.69962 -14.18231 -14.13200 -13.85982 -13.32612 -12.90643 -12.78022 -12.63783 -12.25885 -12.10761 -11.96220 -11.43708 -11.29525 -11.13219 -10.97786 -10.93313 -10.70581 -10.56826 -10.28486 -9.64410 -9.35788 -9.13165 -9.06920 -8.36383 -6.56640 -6.24672 -3.95834 0.40530 1.01991 2.37356 2.53737 3.21894 3.23124 3.27607 3.46533 3.54102 4.20079 4.35040 4.42823 4.58730 4.65168 4.87792 5.00830 5.10508 5.13146 5.14888 5.18600 5.29452 5.32309 5.38680 5.48785 5.61114 5.64495 5.77686 5.82527 5.94689 6.04366 6.14693 6.16536 6.42409 6.44937 6.50539 6.66976 7.58829 7.68663 8.34651 9.21530 10.83386 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.052403 B = 0.002370 C = 0.002273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.192693 B =11812.534503 C =12315.662768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.054 4.054 3 C -0.135 4.135 4 C -0.052 4.052 5 C -0.130 4.130 6 C 0.507 3.493 7 O -0.509 6.509 8 O -0.351 6.351 9 C 0.073 3.927 10 C -0.098 4.098 11 C -0.114 4.114 12 S -0.124 6.124 13 C -0.519 4.519 14 H 0.073 0.927 15 C 0.071 3.929 16 N -0.870 5.870 17 Si 0.920 3.080 18 H -0.274 1.274 19 H -0.283 1.283 20 H -0.274 1.274 21 C -0.056 4.056 22 C -0.135 4.135 23 H 0.076 0.924 24 H 0.070 0.930 25 H 0.069 0.931 26 H 0.131 0.869 27 H 0.137 0.863 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.268 0.732 35 H 0.142 0.858 36 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.104 11.587 0.084 26.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.054 4.054 3 C -0.153 4.153 4 C -0.070 4.070 5 C -0.131 4.131 6 C 0.351 3.649 7 O -0.399 6.399 8 O -0.267 6.267 9 C -0.001 4.001 10 C -0.136 4.136 11 C -0.263 4.263 12 S 0.105 5.895 13 C -0.667 4.667 14 H 0.091 0.909 15 C -0.138 4.138 16 N -0.505 5.505 17 Si 0.746 3.254 18 H -0.199 1.199 19 H -0.208 1.208 20 H -0.199 1.199 21 C -0.074 4.074 22 C -0.153 4.153 23 H 0.094 0.906 24 H 0.089 0.911 25 H 0.088 0.912 26 H 0.149 0.851 27 H 0.155 0.845 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.160 0.840 36 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -24.327 10.658 0.085 26.559 hybrid contribution 2.017 1.502 -0.013 2.514 sum -22.310 12.160 0.072 25.409 Atomic orbital electron populations 1.20892 0.90716 1.03267 1.02812 1.20248 0.96524 0.93206 0.95464 1.21000 0.93532 0.98016 1.02781 1.21281 0.94049 0.97396 0.94288 1.19182 0.89362 0.95063 1.09481 1.21155 0.88721 0.82072 0.72907 1.90826 1.70282 1.32807 1.45985 1.86511 1.23238 1.33392 1.83578 1.23300 0.74360 0.99787 1.02703 1.21287 0.94253 0.93739 1.04326 1.23180 0.95469 1.04291 1.03367 1.84640 1.05474 1.02540 1.96886 1.22655 0.89880 0.95372 1.58785 0.90882 1.25024 0.99737 0.94503 0.94525 1.70015 1.34791 0.98639 1.47051 0.86198 0.82480 0.77818 0.78885 1.19910 1.20798 1.19904 1.21563 0.94299 0.97850 0.93671 1.21081 0.93886 0.98006 1.02343 0.90581 0.91055 0.91154 0.85102 0.84482 0.91050 0.91054 0.90315 0.90320 0.91711 0.91710 0.92198 0.84031 0.85046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.54 10.00 36.00 0.36 -0.18 16 2 C -0.05 -0.39 5.89 -104.53 -0.62 -1.01 16 3 C -0.14 -1.04 9.68 -39.64 -0.38 -1.43 16 4 C -0.05 -0.51 9.60 -39.17 -0.38 -0.89 16 5 C -0.13 -1.49 5.87 -104.98 -0.62 -2.11 16 6 C 0.51 7.19 7.90 34.61 0.27 7.47 16 7 O -0.51 -8.39 16.14 -19.24 -0.31 -8.70 16 8 O -0.35 -5.05 9.47 -40.52 -0.38 -5.43 16 9 C 0.07 1.09 5.48 37.16 0.20 1.29 16 10 C -0.10 -1.60 5.60 -26.73 -0.15 -1.75 16 11 C -0.11 -2.30 5.67 37.15 0.21 -2.09 16 12 S -0.12 -3.22 21.44 -107.50 -2.30 -5.52 16 13 C -0.52 -14.86 9.50 30.94 0.29 -14.56 16 14 H 0.07 2.02 7.80 -52.49 -0.41 1.61 16 15 C 0.07 2.02 5.49 -17.43 -0.10 1.93 16 16 N -0.87 -25.91 13.22 55.49 0.73 -25.17 16 17 Si 0.92 21.55 29.55 -169.99 -5.02 16.53 16 18 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 19 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 20 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 21 C -0.06 -0.54 9.62 -39.17 -0.38 -0.92 16 22 C -0.14 -1.05 9.68 -39.64 -0.38 -1.44 16 23 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 24 H 0.07 0.27 8.08 -51.93 -0.42 -0.15 16 25 H 0.07 0.25 8.08 -51.93 -0.42 -0.17 16 26 H 0.13 0.70 8.06 -52.49 -0.42 0.27 16 27 H 0.14 1.31 7.65 -52.49 -0.40 0.91 16 28 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 29 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 30 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 31 H 0.08 1.28 8.14 -51.92 -0.42 0.86 16 32 H 0.06 1.28 8.14 -51.91 -0.42 0.86 16 33 H 0.06 1.28 8.14 -51.92 -0.42 0.86 16 34 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 35 H 0.14 1.29 7.61 -52.49 -0.40 0.89 16 36 H 0.13 0.74 8.06 -52.48 -0.42 0.31 16 LS Contribution 331.76 15.07 5.00 5.00 Total: -1.00 -32.54 331.76 -8.93 -41.48 By element: Atomic # 1 Polarization: 2.49 SS G_CDS: -4.99 Total: -2.50 kcal Atomic # 6 Polarization: -14.02 SS G_CDS: -1.66 Total: -15.67 kcal Atomic # 7 Polarization: -25.91 SS G_CDS: 0.73 Total: -25.17 kcal Atomic # 8 Polarization: -13.44 SS G_CDS: -0.69 Total: -14.13 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: -3.22 SS G_CDS: -2.30 Total: -5.52 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.54 -8.93 -41.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805338025.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.037 kcal (2) G-P(sol) polarization free energy of solvation -32.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds