Wall clock time and date at job start Tue Mar 31 2020 01:20:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38372 * 119.84555 * 2 1 4 4 C 1.37947 * 120.14939 * 179.97438 * 3 2 1 5 5 C 1.39626 * 119.84448 * 0.26453 * 4 3 2 6 6 C 1.47733 * 120.14512 * 179.70064 * 5 4 3 7 7 O 1.21468 * 120.00116 * 359.97438 * 6 5 4 8 8 O 1.34709 * 119.99568 * 179.97438 * 6 5 4 9 9 C 1.45202 * 116.99855 * 179.97438 * 8 6 5 10 10 C 1.53000 * 109.47467 * 179.97438 * 9 8 6 11 11 C 1.52992 * 109.47277 * 179.97438 * 10 9 8 12 12 S 1.81001 * 109.47305 * 180.02562 * 11 10 9 13 13 C 1.76196 * 100.00133 * 179.97438 * 12 11 10 14 14 H 1.07999 * 120.00430 * 359.97438 * 13 12 11 15 15 C 1.38799 * 120.00066 * 179.97438 * 13 12 11 16 16 N 1.31638 * 119.99706 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 120.00346 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.46788 * 59.99998 * 17 15 13 19 19 H 1.48498 * 109.47213 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.46940 * 300.00460 * 17 15 13 21 21 C 1.39630 * 119.70471 * 359.43966 * 5 4 3 22 22 C 1.37944 * 119.84125 * 0.57764 * 21 5 4 23 23 H 1.09003 * 109.47272 * 90.00406 * 1 2 3 24 24 H 1.08998 * 109.47515 * 209.99858 * 1 2 3 25 25 H 1.08999 * 109.47649 * 330.00542 * 1 2 3 26 26 H 1.07999 * 119.92634 * 359.97438 * 3 2 1 27 27 H 1.08002 * 120.07327 * 179.97438 * 4 3 2 28 28 H 1.09001 * 109.47188 * 299.99648 * 9 8 6 29 29 H 1.09001 * 109.47428 * 59.99501 * 9 8 6 30 30 H 1.09001 * 109.46964 * 300.00195 * 10 9 8 31 31 H 1.09010 * 109.46714 * 59.99849 * 10 9 8 32 32 H 1.09009 * 109.47286 * 299.99820 * 11 10 9 33 33 H 1.09001 * 109.47367 * 60.00064 * 11 10 9 34 34 H 0.97008 * 119.99721 * 180.02562 * 16 15 13 35 35 H 1.07997 * 120.07814 * 180.28070 * 21 5 4 36 36 H 1.08003 * 119.91752 * 179.68020 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1956 1.2002 0.0000 4 6 3.5750 1.2075 0.0005 5 6 4.2763 0.0001 -0.0045 6 6 5.7536 0.0002 -0.0107 7 8 6.3609 1.0522 -0.0118 8 8 6.4271 -1.1664 -0.0150 9 6 7.8771 -1.0903 -0.0215 10 6 8.4620 -2.5041 -0.0251 11 6 9.9898 -2.4240 -0.0326 12 16 10.6818 -4.0965 -0.0375 13 6 12.4021 -3.7159 -0.0465 14 1 12.7274 -2.6861 -0.0479 15 6 13.3394 -4.7396 -0.0518 16 7 12.9429 -5.9949 -0.0506 17 14 15.1633 -4.3362 -0.0620 18 1 15.5021 -3.5458 1.1487 19 1 15.9490 -5.5963 -0.0658 20 1 15.4886 -3.5457 -1.2763 21 6 3.5751 -1.2073 0.0018 22 6 2.1956 -1.2000 0.0009 23 1 -0.3634 -0.0001 -1.0277 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3634 0.8900 0.5137 26 1 1.6518 2.1333 -0.0004 27 1 4.1113 2.1450 0.0001 28 1 8.2090 -0.5573 -0.9124 29 1 8.2172 -0.5591 0.8675 30 1 8.1301 -3.0369 0.8661 31 1 8.1220 -3.0357 -0.9140 32 1 10.3214 -1.8914 -0.9240 33 1 10.3302 -1.8923 0.8560 34 1 13.5980 -6.7104 -0.0539 35 1 4.1114 -2.1447 0.0025 36 1 1.6520 -2.1332 0.0005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805338025.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:20:37 Heat of formation + Delta-G solvation = -102.336611 kcal Electronic energy + Delta-G solvation = -17826.599838 eV Core-core repulsion = 14786.433484 eV Total energy + Delta-G solvation = -3040.166354 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.092 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.68951 -39.95960 -37.83634 -34.98073 -34.59639 -33.86872 -32.01738 -29.03894 -27.97845 -27.23534 -24.02983 -23.64749 -22.73960 -21.67043 -19.62922 -19.00819 -18.20984 -17.78072 -16.90418 -16.44152 -16.22432 -16.03231 -15.96970 -15.46378 -14.82728 -14.66153 -14.49700 -14.15735 -14.11217 -13.83886 -13.17464 -13.01079 -12.96079 -12.90158 -12.66371 -12.62318 -12.42727 -12.42385 -11.98279 -11.77979 -11.56610 -11.46019 -11.14810 -10.38189 -10.01817 -9.79504 -8.69345 -8.38776 -6.15611 -0.37774 0.36721 1.24787 1.40148 1.40761 1.42557 1.49851 1.82011 2.26313 2.73998 2.95576 3.26766 3.52483 3.81535 3.82500 3.94120 3.95310 3.99320 4.11509 4.29758 4.31401 4.37738 4.48713 4.65694 4.75740 4.78822 4.88020 4.98815 5.03612 5.06133 5.21153 5.28138 5.30679 5.38741 5.39948 5.55904 5.89208 6.16721 6.58262 7.03424 8.70277 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.052403 B = 0.002370 C = 0.002273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.192693 B =11812.534503 C =12315.662768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.047 4.047 3 C -0.135 4.135 4 C -0.062 4.062 5 C -0.158 4.158 6 C 0.506 3.494 7 O -0.540 6.540 8 O -0.351 6.351 9 C 0.080 3.920 10 C -0.085 4.085 11 C -0.092 4.092 12 S -0.183 6.183 13 C -0.542 4.542 14 H 0.074 0.926 15 C 0.015 3.985 16 N -0.906 5.906 17 Si 0.994 3.006 18 H -0.265 1.265 19 H -0.274 1.274 20 H -0.265 1.265 21 C -0.063 4.063 22 C -0.137 4.137 23 H 0.087 0.913 24 H 0.081 0.919 25 H 0.082 0.918 26 H 0.157 0.843 27 H 0.133 0.867 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.272 0.728 35 H 0.142 0.858 36 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.622 12.498 0.086 28.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.048 4.048 3 C -0.152 4.152 4 C -0.080 4.080 5 C -0.159 4.159 6 C 0.353 3.647 7 O -0.432 6.432 8 O -0.268 6.268 9 C 0.005 3.995 10 C -0.123 4.123 11 C -0.241 4.241 12 S 0.045 5.955 13 C -0.690 4.690 14 H 0.092 0.908 15 C -0.190 4.190 16 N -0.542 5.542 17 Si 0.816 3.184 18 H -0.190 1.190 19 H -0.199 1.199 20 H -0.190 1.190 21 C -0.081 4.081 22 C -0.155 4.155 23 H 0.106 0.894 24 H 0.100 0.900 25 H 0.101 0.899 26 H 0.175 0.825 27 H 0.151 0.849 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.160 0.840 36 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -25.867 11.565 0.087 28.335 hybrid contribution 2.300 1.255 -0.014 2.620 sum -23.567 12.821 0.073 26.828 Atomic orbital electron populations 1.20978 0.88318 1.04479 1.03838 1.20669 0.98237 0.92651 0.93198 1.21319 0.92604 0.99563 1.01731 1.21389 0.95163 0.96692 0.94762 1.19191 0.87656 0.96538 1.12484 1.21716 0.89810 0.81345 0.71821 1.90799 1.71042 1.33563 1.47807 1.86501 1.22707 1.33866 1.83700 1.23076 0.75019 0.98384 1.03024 1.21100 0.91729 0.94932 1.04566 1.23066 0.97429 0.99903 1.03689 1.84612 1.05603 1.08186 1.97065 1.23024 0.91096 0.95696 1.59146 0.90782 1.26075 1.04970 0.94224 0.93708 1.70144 1.36590 0.99727 1.47759 0.85058 0.75994 0.77984 0.79335 1.18972 1.19896 1.18963 1.21660 0.95334 0.97179 0.93894 1.21399 0.93111 0.99493 1.01458 0.89440 0.89972 0.89927 0.82508 0.84947 0.90787 0.90792 0.90110 0.90119 0.91325 0.91322 0.91880 0.84035 0.82644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.63 10.00 71.23 0.71 0.08 16 2 C -0.05 -0.55 5.89 -19.81 -0.12 -0.67 16 3 C -0.13 -1.79 9.68 22.23 0.22 -1.57 16 4 C -0.06 -1.19 9.60 22.54 0.22 -0.97 16 5 C -0.16 -3.61 5.87 -20.10 -0.12 -3.73 16 6 C 0.51 14.60 7.90 70.33 0.56 15.15 16 7 O -0.54 -18.20 16.14 19.94 0.32 -17.88 16 8 O -0.35 -10.13 9.47 -56.19 -0.53 -10.66 16 9 C 0.08 2.36 5.48 71.98 0.39 2.76 16 10 C -0.08 -2.76 5.60 30.59 0.17 -2.59 16 11 C -0.09 -3.69 5.67 71.98 0.41 -3.28 16 12 S -0.18 -9.72 21.44 -56.49 -1.21 -10.93 16 13 C -0.54 -31.33 9.50 67.95 0.65 -30.68 16 14 H 0.07 4.11 7.80 -2.91 -0.02 4.09 16 15 C 0.02 0.88 5.49 84.86 0.47 1.34 16 16 N -0.91 -54.61 13.22 21.65 0.29 -54.32 16 17 Si 0.99 44.01 29.55 68.60 2.03 46.04 16 18 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 19 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 20 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 21 C -0.06 -1.16 9.62 22.54 0.22 -0.95 16 22 C -0.14 -1.84 9.68 22.23 0.22 -1.62 16 23 H 0.09 0.33 8.14 -2.39 -0.02 0.31 16 24 H 0.08 0.30 8.08 -2.39 -0.02 0.28 16 25 H 0.08 0.28 8.08 -2.39 -0.02 0.26 16 26 H 0.16 1.20 8.06 -2.91 -0.02 1.18 16 27 H 0.13 2.58 7.65 -2.91 -0.02 2.55 16 28 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 29 H 0.07 2.14 8.14 -2.39 -0.02 2.13 16 30 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 31 H 0.08 2.61 8.14 -2.38 -0.02 2.59 16 32 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 33 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 34 H 0.27 15.24 8.31 -92.70 -0.77 14.47 16 35 H 0.14 2.52 7.61 -2.91 -0.02 2.50 16 36 H 0.16 1.28 8.06 -2.91 -0.02 1.26 16 Total: -1.00 -70.80 331.76 5.94 -64.86 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: 1.06 Total: 9.62 kcal Atomic # 6 Polarization: -30.72 SS G_CDS: 3.98 Total: -26.73 kcal Atomic # 7 Polarization: -54.61 SS G_CDS: 0.29 Total: -54.32 kcal Atomic # 8 Polarization: -28.33 SS G_CDS: -0.21 Total: -28.54 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Atomic # 16 Polarization: -9.72 SS G_CDS: -1.21 Total: -10.93 kcal Total: -70.80 5.94 -64.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805338025.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.475 kcal (2) G-P(sol) polarization free energy of solvation -70.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds