Wall clock time and date at job start Tue Mar 31 2020 01:59:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 S 1.81000 * 109.46989 * 2 1 4 4 C 1.76205 * 99.99610 * 180.02562 * 3 2 1 5 5 C 1.39044 * 120.18852 * 0.02562 * 4 3 2 6 6 C 1.37905 * 120.06068 * 179.97438 * 5 4 3 7 7 C 1.38670 * 120.44772 * 359.97438 * 6 5 4 8 8 C 1.37702 * 120.38393 * 0.02562 * 7 6 5 9 9 C 1.39820 * 119.92052 * 359.73882 * 8 7 6 10 10 C 1.47242 * 120.21983 * 180.27752 * 9 8 7 11 11 O 1.21530 * 120.00033 * 180.22632 * 10 9 8 12 12 O 1.34780 * 119.99709 * 0.23798 * 10 9 8 13 13 C 1.45201 * 116.99642 * 179.97438 * 12 10 9 14 14 C 1.53006 * 109.46839 * 179.97438 * 13 12 10 15 15 C 1.50705 * 109.46802 * 179.97438 * 14 13 12 16 16 H 1.07990 * 120.00390 * 359.97438 * 15 14 13 17 17 C 1.37883 * 119.99733 * 179.97438 * 15 14 13 18 18 N 1.31518 * 119.99865 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99919 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46767 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.46786 * 120.00192 * 19 17 15 22 22 H 1.48498 * 109.47090 * 240.00195 * 19 17 15 23 23 H 1.09004 * 109.46930 * 299.99794 * 1 2 3 24 24 H 1.09000 * 109.47312 * 59.99850 * 1 2 3 25 25 H 1.09002 * 109.47067 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46930 * 240.00206 * 2 1 3 27 27 H 1.09004 * 109.47059 * 120.00604 * 2 1 3 28 28 H 1.07996 * 119.96871 * 359.94822 * 5 4 3 29 29 H 1.07998 * 119.77478 * 179.97438 * 6 5 4 30 30 H 1.08001 * 119.80397 * 179.97438 * 7 6 5 31 31 H 1.07992 * 120.03848 * 179.97438 * 8 7 6 32 32 H 1.09002 * 109.47008 * 299.98740 * 13 12 10 33 33 H 1.08994 * 109.47501 * 59.99556 * 13 12 10 34 34 H 1.08995 * 109.47188 * 299.99388 * 14 13 12 35 35 H 1.09002 * 109.47026 * 59.99963 * 14 13 12 36 36 H 0.96999 * 119.99448 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1333 1.7065 0.0000 4 6 3.8713 1.4165 -0.0008 5 6 4.3631 0.1159 -0.0017 6 6 5.7239 -0.1080 -0.0029 7 6 6.6114 0.9574 -0.0036 8 6 6.1445 2.2529 -0.0027 9 6 4.7679 2.4980 -0.0065 10 6 4.2614 3.8806 -0.0117 11 8 3.0641 4.0891 -0.0109 12 8 5.1256 4.9148 -0.0177 13 6 4.5554 6.2502 -0.0232 14 6 5.6819 7.2856 -0.0288 15 6 5.0901 8.6716 -0.0351 16 1 4.0180 8.8010 -0.0356 17 6 5.9176 9.7745 -0.0404 18 7 7.2233 9.6169 -0.0404 19 14 5.1841 11.4924 -0.0490 20 1 3.7021 11.3978 -0.0482 21 1 5.6334 12.2285 1.1601 22 1 5.6337 12.2166 -1.2650 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 3.6789 -0.7196 -0.0011 29 1 6.1009 -1.1201 -0.0032 30 1 7.6751 0.7701 -0.0041 31 1 6.8406 3.0785 -0.0029 32 1 3.9392 6.3785 -0.9131 33 1 3.9413 6.3867 0.8669 34 1 6.2978 7.1573 0.8612 35 1 6.2963 7.1492 -0.9188 36 1 7.8054 10.3928 -0.0445 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000806022119.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:59:39 Heat of formation + Delta-G solvation = -72.826533 kcal Electronic energy + Delta-G solvation = -18625.182610 eV Core-core repulsion = 15586.295909 eV Total energy + Delta-G solvation = -3038.886701 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.092 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.18222 -38.61092 -36.06925 -33.35432 -33.22736 -31.57757 -31.22980 -30.09844 -25.49313 -24.48638 -23.40332 -22.87522 -21.07161 -20.43948 -18.08181 -17.29798 -16.52277 -16.02393 -15.92534 -15.57625 -15.08136 -14.97028 -14.64290 -14.46925 -14.22228 -13.59203 -12.95285 -12.75031 -12.45342 -12.42018 -12.34795 -11.76183 -11.74274 -11.23649 -11.19705 -11.00320 -10.92996 -10.76447 -10.59614 -9.89753 -9.75956 -9.64121 -9.41524 -9.25309 -9.20154 -8.43821 -7.48013 -6.09832 -4.13849 0.60620 1.07250 1.49740 2.30821 2.73818 3.16054 3.28477 3.36052 3.41655 3.65074 4.39926 4.57722 4.63846 4.68705 4.76102 4.90539 5.09197 5.20890 5.25940 5.26995 5.39959 5.44829 5.51414 5.73044 5.80340 5.96626 6.08968 6.11725 6.12279 6.25145 6.61494 6.65193 6.95586 7.56634 7.63205 7.87396 8.17370 8.26336 8.91924 9.50552 11.01779 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.024881 B = 0.003553 C = 0.003120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.106586 B = 7878.980425 C = 8973.026911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.171 4.171 3 S 0.004 5.996 4 C -0.045 4.045 5 C -0.153 4.153 6 C -0.069 4.069 7 C -0.144 4.144 8 C -0.039 4.039 9 C -0.114 4.114 10 C 0.494 3.506 11 O -0.491 6.491 12 O -0.350 6.350 13 C 0.076 3.924 14 C 0.025 3.975 15 C -0.525 4.525 16 H 0.060 0.940 17 C 0.060 3.940 18 N -0.890 5.890 19 Si 0.899 3.101 20 H -0.271 1.271 21 H -0.282 1.282 22 H -0.282 1.282 23 H 0.064 0.936 24 H 0.064 0.936 25 H 0.068 0.932 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.132 0.868 29 H 0.129 0.871 30 H 0.133 0.867 31 H 0.147 0.853 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.028 0.972 35 H 0.028 0.972 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.671 -23.003 0.093 23.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.319 4.319 3 S 0.251 5.749 4 C -0.160 4.160 5 C -0.177 4.177 6 C -0.089 4.089 7 C -0.165 4.165 8 C -0.059 4.059 9 C -0.122 4.122 10 C 0.339 3.661 11 O -0.382 6.382 12 O -0.266 6.266 13 C 0.004 3.996 14 C -0.013 4.013 15 C -0.563 4.563 16 H 0.078 0.922 17 C -0.142 4.142 18 N -0.529 5.529 19 Si 0.727 3.273 20 H -0.196 1.196 21 H -0.208 1.208 22 H -0.208 1.208 23 H 0.083 0.917 24 H 0.083 0.917 25 H 0.087 0.913 26 H 0.103 0.897 27 H 0.103 0.897 28 H 0.150 0.850 29 H 0.147 0.853 30 H 0.150 0.850 31 H 0.165 0.835 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.047 0.953 35 H 0.047 0.953 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.703 -21.762 0.093 22.771 hybrid contribution 0.483 -0.176 -0.004 0.514 sum -6.220 -21.938 0.089 22.803 Atomic orbital electron populations 1.21445 0.92115 1.02466 1.03255 1.24057 1.01093 1.01642 1.05059 1.87295 0.94363 1.04248 1.89022 1.22205 0.98657 0.95215 0.99916 1.21107 0.96527 0.94546 1.05543 1.21262 0.92700 0.99413 0.95535 1.21166 1.00303 0.92161 1.02900 1.21565 0.93812 0.98061 0.92420 1.18866 0.93790 0.89469 1.10124 1.20943 0.84937 0.86359 0.73895 1.90728 1.16481 1.85003 1.45989 1.86575 1.40139 1.17109 1.82825 1.23680 0.99201 0.75647 1.01096 1.19178 0.92672 0.90531 0.98871 1.21022 0.93321 0.90004 1.51981 0.92164 1.24986 0.94803 0.99513 0.94878 1.69986 1.02560 1.30392 1.49940 0.86416 0.79427 0.83804 0.77686 1.19558 1.20838 1.20833 0.91653 0.91656 0.91344 0.89732 0.89734 0.85001 0.85304 0.84951 0.83546 0.92170 0.92174 0.95328 0.95334 0.92779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.05 9.92 37.16 0.37 -0.68 16 2 C -0.17 -1.54 4.89 37.16 0.18 -1.36 16 3 S 0.00 0.05 18.97 -107.50 -2.04 -1.99 16 4 C -0.05 -0.63 6.16 -38.44 -0.24 -0.86 16 5 C -0.15 -1.61 9.17 -39.40 -0.36 -1.97 16 6 C -0.07 -0.63 10.02 -39.54 -0.40 -1.03 16 7 C -0.14 -1.46 10.02 -39.62 -0.40 -1.86 16 8 C -0.04 -0.51 9.61 -39.19 -0.38 -0.89 16 9 C -0.11 -1.79 5.89 -104.80 -0.62 -2.41 16 10 C 0.49 9.44 7.87 34.39 0.27 9.71 16 11 O -0.49 -10.15 13.56 -19.29 -0.26 -10.41 16 12 O -0.35 -7.26 9.47 -40.71 -0.39 -7.65 16 13 C 0.08 1.73 5.42 37.16 0.20 1.93 16 14 C 0.02 0.65 5.35 -27.88 -0.15 0.50 16 15 C -0.53 -14.89 9.11 -34.44 -0.31 -15.20 16 16 H 0.06 1.66 7.74 -52.49 -0.41 1.25 16 17 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 18 N -0.89 -26.46 13.29 55.43 0.74 -25.73 16 19 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 16 20 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.08 0.67 7.54 -51.91 -0.39 0.28 16 27 H 0.08 0.67 7.54 -51.91 -0.39 0.28 16 28 H 0.13 1.06 5.50 -52.49 -0.29 0.77 16 29 H 0.13 0.77 8.06 -52.49 -0.42 0.34 16 30 H 0.13 0.99 8.06 -52.49 -0.42 0.56 16 31 H 0.15 1.90 7.61 -52.49 -0.40 1.50 16 32 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 33 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 34 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 322.37 15.07 4.86 4.86 Total: -1.00 -31.78 322.37 -8.85 -40.64 By element: Atomic # 1 Polarization: 1.06 SS G_CDS: -4.82 Total: -3.75 kcal Atomic # 6 Polarization: -10.56 SS G_CDS: -1.92 Total: -12.48 kcal Atomic # 7 Polarization: -26.46 SS G_CDS: 0.74 Total: -25.73 kcal Atomic # 8 Polarization: -17.41 SS G_CDS: -0.65 Total: -18.06 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 16 Polarization: 0.05 SS G_CDS: -2.04 Total: -1.99 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.78 -8.85 -40.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000806022119.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.189 kcal (2) G-P(sol) polarization free energy of solvation -31.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds