Wall clock time and date at job start Tue Mar 31 2020 01:59:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 S 1.81000 * 109.46989 * 2 1 4 4 C 1.76205 * 99.99610 * 180.02562 * 3 2 1 5 5 C 1.39044 * 120.18852 * 0.02562 * 4 3 2 6 6 C 1.37905 * 120.06068 * 179.97438 * 5 4 3 7 7 C 1.38670 * 120.44772 * 359.97438 * 6 5 4 8 8 C 1.37702 * 120.38393 * 0.02562 * 7 6 5 9 9 C 1.39820 * 119.92052 * 359.73882 * 8 7 6 10 10 C 1.47242 * 120.21983 * 180.27752 * 9 8 7 11 11 O 1.21530 * 120.00033 * 180.22632 * 10 9 8 12 12 O 1.34780 * 119.99709 * 0.23798 * 10 9 8 13 13 C 1.45201 * 116.99642 * 179.97438 * 12 10 9 14 14 C 1.53006 * 109.46839 * 179.97438 * 13 12 10 15 15 C 1.50705 * 109.46802 * 179.97438 * 14 13 12 16 16 H 1.07990 * 120.00390 * 359.97438 * 15 14 13 17 17 C 1.37883 * 119.99733 * 179.97438 * 15 14 13 18 18 N 1.31518 * 119.99865 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99919 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46767 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.46786 * 120.00192 * 19 17 15 22 22 H 1.48498 * 109.47090 * 240.00195 * 19 17 15 23 23 H 1.09004 * 109.46930 * 299.99794 * 1 2 3 24 24 H 1.09000 * 109.47312 * 59.99850 * 1 2 3 25 25 H 1.09002 * 109.47067 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46930 * 240.00206 * 2 1 3 27 27 H 1.09004 * 109.47059 * 120.00604 * 2 1 3 28 28 H 1.07996 * 119.96871 * 359.94822 * 5 4 3 29 29 H 1.07998 * 119.77478 * 179.97438 * 6 5 4 30 30 H 1.08001 * 119.80397 * 179.97438 * 7 6 5 31 31 H 1.07992 * 120.03848 * 179.97438 * 8 7 6 32 32 H 1.09002 * 109.47008 * 299.98740 * 13 12 10 33 33 H 1.08994 * 109.47501 * 59.99556 * 13 12 10 34 34 H 1.08995 * 109.47188 * 299.99388 * 14 13 12 35 35 H 1.09002 * 109.47026 * 59.99963 * 14 13 12 36 36 H 0.96999 * 119.99448 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1333 1.7065 0.0000 4 6 3.8713 1.4165 -0.0008 5 6 4.3631 0.1159 -0.0017 6 6 5.7239 -0.1080 -0.0029 7 6 6.6114 0.9574 -0.0036 8 6 6.1445 2.2529 -0.0027 9 6 4.7679 2.4980 -0.0065 10 6 4.2614 3.8806 -0.0117 11 8 3.0641 4.0891 -0.0109 12 8 5.1256 4.9148 -0.0177 13 6 4.5554 6.2502 -0.0232 14 6 5.6819 7.2856 -0.0288 15 6 5.0901 8.6716 -0.0351 16 1 4.0180 8.8010 -0.0356 17 6 5.9176 9.7745 -0.0404 18 7 7.2233 9.6169 -0.0404 19 14 5.1841 11.4924 -0.0490 20 1 3.7021 11.3978 -0.0482 21 1 5.6334 12.2285 1.1601 22 1 5.6337 12.2166 -1.2650 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 3.6789 -0.7196 -0.0011 29 1 6.1009 -1.1201 -0.0032 30 1 7.6751 0.7701 -0.0041 31 1 6.8406 3.0785 -0.0029 32 1 3.9392 6.3785 -0.9131 33 1 3.9413 6.3867 0.8669 34 1 6.2978 7.1573 0.8612 35 1 6.2963 7.1492 -0.9188 36 1 7.8054 10.3928 -0.0445 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000806022119.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:59:38 Heat of formation + Delta-G solvation = -89.772992 kcal Electronic energy + Delta-G solvation = -18625.917463 eV Core-core repulsion = 15586.295909 eV Total energy + Delta-G solvation = -3039.621555 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.092 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.58759 -39.68962 -37.68384 -35.47381 -33.94473 -32.81225 -32.13232 -31.90501 -27.32625 -25.64016 -24.46334 -23.77663 -22.93982 -21.79139 -19.34250 -18.68112 -18.14952 -17.59711 -17.56595 -16.65286 -16.39247 -15.99041 -15.79903 -15.45083 -15.19863 -15.15655 -14.46590 -14.37327 -13.92386 -13.31764 -13.15955 -13.14655 -13.03329 -12.62982 -12.61645 -12.57694 -12.40407 -12.15866 -11.97196 -11.68443 -11.52409 -11.44221 -10.79180 -10.63614 -10.53457 -10.14817 -8.50565 -8.28905 -6.42203 -0.44077 0.19014 0.56059 1.38624 1.40822 1.42639 1.47275 1.54645 1.74533 2.39122 2.65441 3.05400 3.57819 3.77353 4.00199 4.01285 4.04497 4.18195 4.21488 4.29632 4.35063 4.47750 4.53407 4.65336 4.83200 4.86134 4.88089 5.05097 5.19509 5.21269 5.26198 5.39107 5.43302 5.48513 5.71194 5.79437 6.04307 6.64656 6.71570 7.27522 8.84076 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.024881 B = 0.003553 C = 0.003120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.106586 B = 7878.980425 C = 8973.026911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.147 4.147 3 S -0.081 6.081 4 C -0.050 4.050 5 C -0.149 4.149 6 C -0.049 4.049 7 C -0.136 4.136 8 C -0.053 4.053 9 C -0.150 4.150 10 C 0.487 3.513 11 O -0.515 6.515 12 O -0.359 6.359 13 C 0.093 3.907 14 C 0.033 3.967 15 C -0.551 4.551 16 H 0.064 0.936 17 C 0.007 3.993 18 N -0.926 5.926 19 Si 0.975 3.025 20 H -0.263 1.263 21 H -0.274 1.274 22 H -0.274 1.274 23 H 0.057 0.943 24 H 0.057 0.943 25 H 0.097 0.903 26 H 0.101 0.899 27 H 0.101 0.899 28 H 0.163 0.837 29 H 0.176 0.824 30 H 0.165 0.835 31 H 0.136 0.864 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.007 0.993 35 H 0.007 0.993 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.763 -25.677 0.095 26.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.294 4.294 3 S 0.166 5.834 4 C -0.164 4.164 5 C -0.172 4.172 6 C -0.069 4.069 7 C -0.157 4.157 8 C -0.072 4.072 9 C -0.158 4.158 10 C 0.334 3.666 11 O -0.407 6.407 12 O -0.275 6.275 13 C 0.019 3.981 14 C -0.004 4.004 15 C -0.589 4.589 16 H 0.082 0.918 17 C -0.192 4.192 18 N -0.565 5.565 19 Si 0.798 3.202 20 H -0.187 1.187 21 H -0.199 1.199 22 H -0.199 1.199 23 H 0.076 0.924 24 H 0.076 0.924 25 H 0.115 0.885 26 H 0.120 0.880 27 H 0.120 0.880 28 H 0.180 0.820 29 H 0.194 0.806 30 H 0.183 0.817 31 H 0.154 0.846 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.026 0.974 35 H 0.026 0.974 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.794 -24.456 0.095 25.383 hybrid contribution 0.541 0.431 -0.004 0.692 sum -6.253 -24.025 0.091 24.826 Atomic orbital electron populations 1.21497 0.91316 1.03969 1.02567 1.24056 1.01472 0.97273 1.06627 1.87497 0.96365 1.10189 1.89369 1.22299 0.97556 0.96072 1.00499 1.21546 0.97948 0.93671 1.04083 1.21824 0.91728 1.01230 0.92118 1.21565 1.02311 0.90816 1.00983 1.21634 0.92590 0.99667 0.93354 1.18818 0.95335 0.87612 1.13993 1.21706 0.84629 0.87211 0.73099 1.90726 1.17233 1.85614 1.47117 1.86556 1.40744 1.16692 1.83558 1.23183 0.97502 0.76505 1.00868 1.18972 0.93116 0.91577 0.96725 1.21390 0.93742 0.91147 1.52589 0.91815 1.25972 0.95165 1.04125 0.93982 1.70101 1.04025 1.32036 1.50345 0.85253 0.78841 0.77951 0.78117 1.18733 1.19909 1.19901 0.92425 0.92437 0.88459 0.88017 0.88010 0.82002 0.80626 0.81717 0.84573 0.92340 0.92346 0.97428 0.97436 0.92262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 9.92 71.98 0.71 -1.14 16 2 C -0.15 -2.29 4.89 71.98 0.35 -1.94 16 3 S -0.08 -2.28 18.97 -56.49 -1.07 -3.35 16 4 C -0.05 -1.34 6.16 23.01 0.14 -1.20 16 5 C -0.15 -2.60 9.17 22.38 0.21 -2.40 16 6 C -0.05 -0.66 10.02 22.29 0.22 -0.44 16 7 C -0.14 -2.33 10.02 22.25 0.22 -2.10 16 8 C -0.05 -1.38 9.61 22.53 0.22 -1.16 16 9 C -0.15 -4.81 5.89 -19.98 -0.12 -4.93 16 10 C 0.49 19.79 7.87 70.19 0.55 20.34 16 11 O -0.51 -22.69 13.56 19.74 0.27 -22.42 16 12 O -0.36 -15.88 9.47 -56.91 -0.54 -16.42 16 13 C 0.09 4.46 5.42 71.98 0.39 4.85 16 14 C 0.03 1.85 5.35 29.85 0.16 2.01 16 15 C -0.55 -32.17 9.11 25.60 0.23 -31.93 16 16 H 0.06 3.59 7.74 -2.92 -0.02 3.56 16 17 C 0.01 0.38 5.46 84.66 0.46 0.84 16 18 N -0.93 -56.17 13.29 21.45 0.28 -55.89 16 19 Si 0.97 44.44 29.54 68.60 2.03 46.47 16 20 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 21 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 22 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 23 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 24 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.10 1.26 7.54 -2.39 -0.02 1.25 16 27 H 0.10 1.26 7.54 -2.39 -0.02 1.25 16 28 H 0.16 1.81 5.50 -2.91 -0.02 1.79 16 29 H 0.18 0.84 8.06 -2.91 -0.02 0.81 16 30 H 0.17 1.74 8.06 -2.91 -0.02 1.72 16 31 H 0.14 3.70 7.61 -2.91 -0.02 3.68 16 32 H 0.06 2.80 8.14 -2.39 -0.02 2.78 16 33 H 0.06 2.79 8.14 -2.39 -0.02 2.78 16 34 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 35 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 36 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 Total: -1.00 -72.85 322.37 5.79 -67.06 By element: Atomic # 1 Polarization: 2.68 SS G_CDS: 1.07 Total: 3.75 kcal Atomic # 6 Polarization: -22.94 SS G_CDS: 3.76 Total: -19.19 kcal Atomic # 7 Polarization: -56.17 SS G_CDS: 0.28 Total: -55.89 kcal Atomic # 8 Polarization: -38.57 SS G_CDS: -0.27 Total: -38.84 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Atomic # 16 Polarization: -2.28 SS G_CDS: -1.07 Total: -3.35 kcal Total: -72.85 5.79 -67.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000806022119.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.716 kcal (2) G-P(sol) polarization free energy of solvation -72.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds