Wall clock time and date at job start Tue Mar 31 2020 01:17:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86802 * 120.00003 * 2 1 4 4 H 1.48500 * 109.47102 * 240.00141 * 3 2 1 5 5 H 1.48505 * 109.47125 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47363 * 120.00159 * 3 2 1 7 7 C 1.38948 * 120.00331 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00165 * 179.97438 * 7 2 1 9 9 N 1.37097 * 120.00151 * 359.97438 * 7 2 1 10 10 C 1.34771 * 120.00551 * 179.97438 * 9 7 2 11 11 O 1.21296 * 119.99921 * 0.02562 * 10 9 7 12 12 C 1.50701 * 120.00189 * 180.02562 * 10 9 7 13 13 O 1.45203 * 109.46786 * 180.02562 * 12 10 9 14 14 C 1.34885 * 116.99556 * 180.02562 * 13 12 10 15 15 O 1.21613 * 120.00342 * 359.97438 * 14 13 12 16 16 C 1.46537 * 119.99812 * 180.02562 * 14 13 12 17 17 O 1.35368 * 126.65559 * 359.97179 * 16 14 13 18 18 C 1.33650 * 107.68353 * 180.02562 * 17 16 14 19 19 N 1.30633 * 109.17393 * 0.02562 * 18 17 16 20 20 C 1.33654 * 109.00639 * 359.97438 * 19 18 17 21 21 C 1.50705 * 126.27584 * 179.73630 * 20 19 18 22 22 C 1.52999 * 117.50152 * 8.77360 * 21 20 19 23 23 C 1.53004 * 117.49897 * 300.11367 * 21 20 19 24 24 H 0.96997 * 120.00154 * 359.97438 * 1 2 3 25 25 H 0.97006 * 119.99865 * 0.02562 * 9 7 2 26 26 H 1.08998 * 109.47027 * 60.00533 * 12 10 9 27 27 H 1.08994 * 109.47417 * 300.00290 * 12 10 9 28 28 H 1.08005 * 125.41040 * 180.02562 * 18 17 16 29 29 H 1.08996 * 115.54686 * 154.44491 * 21 20 19 30 30 H 1.09002 * 117.49459 * 0.02562 * 22 21 20 31 31 H 1.08998 * 117.50323 * 145.01795 * 22 21 20 32 32 H 1.08999 * 117.49649 * 214.97962 * 23 21 20 33 33 H 1.08996 * 117.49840 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1018 1.6964 -1.2125 5 1 1.2831 2.7465 -0.0006 6 1 3.1019 1.6965 1.2124 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3235 -2.3906 -0.0005 10 6 1.9973 -3.5578 -0.0016 11 8 3.2103 -3.5578 -0.0021 12 6 1.2439 -4.8629 -0.0022 13 8 2.1875 -5.9665 -0.0027 14 6 1.6720 -7.2129 -0.0038 15 8 0.4663 -7.3724 -0.0038 16 6 2.5647 -8.3750 -0.0037 17 8 3.9182 -8.3543 -0.0032 18 6 4.3436 -9.6213 -0.0040 19 7 3.3104 -10.4208 -0.0055 20 6 2.1928 -9.6877 -0.0052 21 6 0.7809 -10.2146 -0.0121 22 6 0.5872 -11.7192 0.1867 23 6 0.3606 -11.0936 -1.1918 24 1 -0.4850 0.8400 0.0004 25 1 0.3534 -2.3907 -0.0005 26 1 0.6170 -4.9201 -0.8920 27 1 0.6175 -4.9213 0.8879 28 1 5.3772 -9.9344 -0.0035 29 1 0.0290 -9.5499 0.4132 30 1 1.4811 -12.3280 0.3229 31 1 -0.2922 -12.0444 0.7425 32 1 -0.6679 -11.0074 -1.5424 33 1 1.1052 -11.2904 -1.9631 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000808682934.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:17:53 Heat of formation + Delta-G solvation = -64.761480 kcal Electronic energy + Delta-G solvation = -20740.874308 eV Core-core repulsion = 17156.044119 eV Total energy + Delta-G solvation = -3584.830189 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.094 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.72399 -40.24151 -38.20247 -37.68755 -36.20940 -34.66317 -34.02903 -31.43360 -31.02832 -28.50005 -25.33116 -24.32955 -23.92883 -22.57805 -21.53291 -20.59530 -19.62891 -18.41936 -18.10749 -17.27296 -17.14883 -16.54110 -16.11558 -15.82345 -15.40810 -14.92807 -14.60837 -14.04634 -14.03057 -13.90174 -13.14194 -12.43032 -12.28750 -12.16193 -12.13174 -11.71443 -11.63837 -11.21914 -11.13361 -11.04090 -10.72014 -10.54820 -10.50312 -10.41609 -10.30819 -9.61932 -9.13892 -8.56263 -8.10782 -6.52007 -3.94204 0.44259 2.02297 2.05800 2.63208 2.80512 3.14146 3.21777 3.26587 3.60590 3.70438 3.73250 4.09100 4.16747 4.50811 4.71638 4.80049 4.95705 5.03380 5.12293 5.19303 5.28919 5.44366 5.46550 5.59954 5.62606 5.86068 5.91224 5.96923 6.00546 6.35859 7.20163 7.45808 7.60634 7.91421 8.45793 9.04747 9.36280 9.86223 10.65097 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.038802 B = 0.003170 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.435334 B = 8830.864945 C = 9466.886808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.026 3.974 3 Si 0.935 3.065 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.304 4.304 8 H 0.106 0.894 9 N -0.551 5.551 10 C 0.437 3.563 11 O -0.574 6.574 12 C 0.061 3.939 13 O -0.313 6.313 14 C 0.554 3.446 15 O -0.484 6.484 16 C -0.085 4.085 17 O -0.169 6.169 18 C 0.212 3.788 19 N -0.494 5.494 20 C 0.121 3.879 21 C -0.097 4.097 22 C -0.159 4.159 23 C -0.156 4.156 24 H 0.275 0.725 25 H 0.395 0.605 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.261 0.739 29 H 0.140 0.860 30 H 0.105 0.895 31 H 0.100 0.900 32 H 0.104 0.896 33 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.083 -19.801 -0.357 19.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.177 4.177 3 Si 0.761 3.239 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.433 4.433 8 H 0.124 0.876 9 N -0.188 5.188 10 C 0.222 3.778 11 O -0.458 6.458 12 C -0.017 4.017 13 O -0.227 6.227 14 C 0.397 3.603 15 O -0.374 6.374 16 C -0.138 4.138 17 O -0.054 6.054 18 C -0.012 4.012 19 N -0.223 5.223 20 C -0.002 4.002 21 C -0.116 4.116 22 C -0.196 4.196 23 C -0.194 4.194 24 H 0.085 0.915 25 H 0.229 0.771 26 H 0.110 0.890 27 H 0.109 0.891 28 H 0.276 0.724 29 H 0.158 0.842 30 H 0.123 0.877 31 H 0.119 0.881 32 H 0.122 0.878 33 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 1.505 -20.207 -0.357 20.266 hybrid contribution -0.142 1.612 0.015 1.618 sum 1.363 -18.595 -0.343 18.648 Atomic orbital electron populations 1.69601 1.06002 1.28648 1.49472 1.25311 0.95690 0.99868 0.96796 0.85852 0.78761 0.80025 0.79223 1.19733 1.20838 1.19728 1.19684 0.93482 0.81725 1.48384 0.87639 1.41679 1.09373 1.04003 1.63742 1.19257 0.88342 0.83995 0.86239 1.90578 1.13372 1.86698 1.55192 1.22880 0.90693 0.84156 1.03922 1.86711 1.39911 1.13451 1.82585 1.18936 0.85337 0.82240 0.73752 1.90908 1.13659 1.86187 1.46614 1.21495 0.80545 0.94452 1.17355 1.84661 1.20564 1.32265 1.67908 1.28437 1.01146 0.75938 0.95698 1.70293 0.97466 1.34663 1.19892 1.21041 0.94882 0.87286 0.97037 1.20594 0.90016 0.94795 1.06183 1.23012 1.03816 0.93475 0.99345 1.22992 1.02756 1.02009 0.91622 0.91530 0.77108 0.89047 0.89062 0.72390 0.84189 0.87685 0.88113 0.87791 0.88573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.88 13.05 55.50 0.72 -23.16 16 2 C 0.03 0.68 5.50 -17.47 -0.10 0.59 16 3 Si 0.93 20.62 29.55 -169.99 -5.02 15.60 16 4 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 5 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 6 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 7 C -0.30 -8.35 9.68 -14.93 -0.14 -8.50 16 8 H 0.11 3.03 7.16 -52.49 -0.38 2.65 16 9 N -0.55 -13.84 5.29 -10.96 -0.06 -13.90 16 10 C 0.44 10.55 7.86 -10.99 -0.09 10.46 16 11 O -0.57 -16.12 16.08 -14.12 -0.23 -16.35 16 12 C 0.06 1.15 5.96 36.01 0.21 1.36 16 13 O -0.31 -6.08 9.77 -48.12 -0.47 -6.55 16 14 C 0.55 9.31 7.93 34.08 0.27 9.58 16 15 O -0.48 -8.12 14.67 -19.35 -0.28 -8.41 16 16 C -0.08 -1.26 7.25 -36.89 -0.27 -1.53 16 17 O -0.17 -2.29 10.79 4.37 0.05 -2.25 16 18 C 0.21 2.00 13.20 52.25 0.69 2.69 16 19 N -0.49 -5.72 10.89 -10.87 -0.12 -5.84 16 20 C 0.12 1.59 6.67 -82.45 -0.55 1.04 16 21 C -0.10 -1.11 5.60 -91.77 -0.51 -1.63 16 22 C -0.16 -1.43 10.15 -26.69 -0.27 -1.70 16 23 C -0.16 -1.46 10.24 -26.69 -0.27 -1.74 16 24 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 25 H 0.40 9.34 7.90 -40.82 -0.32 9.02 16 26 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 27 H 0.09 1.53 8.14 -51.93 -0.42 1.10 16 28 H 0.26 0.89 8.06 -52.48 -0.42 0.47 16 29 H 0.14 1.69 6.65 -51.93 -0.35 1.34 16 30 H 0.10 0.97 7.92 -51.93 -0.41 0.56 16 31 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 308.14 15.07 4.64 4.64 Total: -1.00 -33.40 308.14 -4.92 -38.32 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: -3.13 Total: 7.24 kcal Atomic # 6 Polarization: 11.66 SS G_CDS: -1.03 Total: 10.64 kcal Atomic # 7 Polarization: -43.44 SS G_CDS: 0.55 Total: -42.90 kcal Atomic # 8 Polarization: -32.62 SS G_CDS: -0.93 Total: -33.55 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -33.40 -4.92 -38.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000808682934.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.438 kcal (2) G-P(sol) polarization free energy of solvation -33.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds