Wall clock time and date at job start Tue Mar 31 2020 01:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86797 * 120.00056 * 2 1 4 4 H 1.48496 * 109.47336 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47224 * 300.00074 * 3 2 1 6 6 H 1.48507 * 109.47288 * 60.00177 * 3 2 1 7 7 C 1.38954 * 120.00182 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99786 * 180.02562 * 7 2 1 9 9 N 1.37099 * 119.99955 * 359.97438 * 7 2 1 10 10 C 1.34771 * 120.00069 * 180.02562 * 9 7 2 11 11 O 1.21293 * 120.00194 * 0.02562 * 10 9 7 12 12 C 1.50698 * 120.00161 * 179.97438 * 10 9 7 13 13 O 1.45196 * 109.47190 * 180.02562 * 12 10 9 14 14 C 1.34764 * 116.99787 * 180.02562 * 13 12 10 15 15 O 1.21524 * 120.00438 * 359.97438 * 14 13 12 16 16 C 1.47255 * 119.99771 * 179.97438 * 14 13 12 17 17 C 1.37437 * 128.57491 * 0.02562 * 16 14 13 18 18 O 1.33474 * 106.32842 * 179.97438 * 17 16 14 19 19 N 1.20652 * 113.17171 * 0.02562 * 18 17 16 20 20 C 1.29992 * 112.32861 * 359.97438 * 19 18 17 21 21 C 1.50695 * 127.34318 * 180.02562 * 20 19 18 22 22 C 1.53007 * 117.49563 * 8.72845 * 21 20 19 23 23 C 1.53003 * 117.50308 * 300.06715 * 21 20 19 24 24 H 0.97000 * 120.00640 * 359.97438 * 1 2 3 25 25 H 0.96998 * 119.99434 * 359.97438 * 9 7 2 26 26 H 1.09004 * 109.47072 * 59.99934 * 12 10 9 27 27 H 1.09004 * 109.47040 * 300.00236 * 12 10 9 28 28 H 1.08002 * 126.83551 * 0.02562 * 17 16 14 29 29 H 1.09003 * 115.55034 * 154.39270 * 21 20 19 30 30 H 1.08991 * 117.49791 * 359.97438 * 22 21 20 31 31 H 1.08999 * 117.49735 * 145.02193 * 22 21 20 32 32 H 1.09003 * 117.49822 * 214.97976 * 23 21 20 33 33 H 1.09000 * 117.49143 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7080 1.3464 -0.0006 5 1 1.8893 2.3964 -1.2125 6 1 1.8894 2.3965 1.2126 7 6 2.0089 -1.2034 -0.0005 8 1 3.0888 -1.2033 -0.0001 9 7 1.3234 -2.3907 -0.0005 10 6 1.9973 -3.5578 -0.0005 11 8 3.2102 -3.5579 -0.0001 12 6 1.2438 -4.8629 0.0000 13 8 2.1874 -5.9665 0.0005 14 6 1.6723 -7.2118 0.0006 15 8 0.4675 -7.3711 0.0006 16 6 2.5693 -8.3796 0.0005 17 6 3.9435 -8.4047 0.0009 18 8 4.2953 -9.6922 0.0012 19 7 3.3505 -10.4425 0.0005 20 6 2.2160 -9.8081 0.0002 21 6 0.8334 -10.4075 0.0000 22 6 0.7189 -11.9193 0.2061 23 6 0.4559 -11.3125 -1.1745 24 1 -0.4851 0.8400 0.0004 25 1 0.3534 -2.3906 0.0002 26 1 0.6168 -4.9209 -0.8897 27 1 0.6175 -4.9205 0.8903 28 1 4.6066 -7.5522 0.0017 29 1 0.0492 -9.7809 0.4248 30 1 1.6436 -12.4802 0.3413 31 1 -0.1409 -12.2872 0.7660 32 1 -0.5768 -11.2815 -1.5222 33 1 1.2075 -11.4739 -1.9472 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000811318666.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:10:23 Heat of formation + Delta-G solvation = -31.405198 kcal Electronic energy + Delta-G solvation = -20648.256399 eV Core-core repulsion = 17064.872647 eV Total energy + Delta-G solvation = -3583.383752 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.094 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -45.17353 -40.20998 -38.20380 -37.72897 -36.12117 -34.05541 -33.52504 -32.18674 -31.42637 -28.60165 -25.62576 -24.63361 -24.28823 -22.67932 -21.19342 -20.48175 -19.63696 -18.39264 -18.11294 -17.93157 -17.21117 -16.48070 -16.32054 -15.84075 -15.50148 -14.91718 -14.53196 -14.09275 -14.06404 -13.75808 -13.00771 -12.44556 -12.39179 -12.09542 -11.95801 -11.88988 -11.66194 -11.58379 -11.18633 -10.84525 -10.55903 -10.51760 -10.42338 -10.33889 -10.01752 -9.80561 -9.66047 -8.58895 -8.13095 -6.54218 -3.96431 0.76484 1.43218 2.32619 2.80139 2.96963 3.08817 3.21612 3.28751 3.53001 3.68228 3.69606 3.94220 4.08764 4.56677 4.62574 4.69227 4.74176 4.80106 5.06097 5.10753 5.33055 5.34928 5.41326 5.52065 5.62812 5.63215 5.81508 5.87510 5.99146 6.45380 7.44038 7.70166 7.89824 7.93907 8.43145 9.02651 9.34338 9.83522 10.62949 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.039677 B = 0.003087 C = 0.002889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.521386 B = 9068.888094 C = 9689.379525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.025 3.975 3 Si 0.933 3.067 4 H -0.266 1.266 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.303 4.303 8 H 0.107 0.893 9 N -0.551 5.551 10 C 0.438 3.562 11 O -0.577 6.577 12 C 0.063 3.937 13 O -0.321 6.321 14 C 0.543 3.457 15 O -0.501 6.501 16 C -0.241 4.241 17 C 0.035 3.965 18 O 0.096 5.904 19 N -0.358 5.358 20 C 0.107 3.893 21 C -0.090 4.090 22 C -0.164 4.164 23 C -0.157 4.157 24 H 0.274 0.726 25 H 0.395 0.605 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.241 0.759 29 H 0.140 0.860 30 H 0.101 0.899 31 H 0.104 0.896 32 H 0.106 0.894 33 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.032 -18.257 -0.347 18.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.177 4.177 3 Si 0.760 3.240 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.432 4.432 8 H 0.125 0.875 9 N -0.188 5.188 10 C 0.223 3.777 11 O -0.461 6.461 12 C -0.014 4.014 13 O -0.236 6.236 14 C 0.386 3.614 15 O -0.390 6.390 16 C -0.246 4.246 17 C -0.047 4.047 18 O 0.039 5.961 19 N -0.066 5.066 20 C -0.055 4.055 21 C -0.108 4.108 22 C -0.201 4.201 23 C -0.195 4.195 24 H 0.084 0.916 25 H 0.229 0.771 26 H 0.107 0.893 27 H 0.107 0.893 28 H 0.257 0.743 29 H 0.157 0.843 30 H 0.120 0.880 31 H 0.123 0.877 32 H 0.125 0.875 33 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 1.754 -19.363 -0.342 19.445 hybrid contribution -0.808 1.820 0.013 1.992 sum 0.945 -17.543 -0.330 17.571 Atomic orbital electron populations 1.69615 1.06023 1.28467 1.49526 1.25322 0.95689 0.99913 0.96807 0.85740 0.79717 0.80703 0.77841 1.19060 1.20595 1.20590 1.19778 0.93515 0.81688 1.48203 0.87513 1.41704 1.09414 1.04077 1.63609 1.19266 0.88318 0.84005 0.86156 1.90556 1.13376 1.86772 1.55443 1.22810 0.90716 0.84082 1.03799 1.86571 1.40170 1.13583 1.83244 1.19483 0.86116 0.82540 0.73224 1.90834 1.15393 1.86761 1.46012 1.21213 0.93195 0.92354 1.17860 1.26854 0.95762 0.88408 0.93638 1.84597 1.30660 1.13878 1.66989 1.73627 0.95190 1.17117 1.20653 1.23805 0.94680 0.88021 0.99013 1.20402 0.90863 0.93497 1.06084 1.23068 1.04021 0.93428 0.99624 1.23051 1.03154 1.01714 0.91593 0.91617 0.77116 0.89258 0.89269 0.74308 0.84254 0.88007 0.87745 0.87543 0.88533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.61 13.05 55.50 0.72 -22.88 16 2 C 0.03 0.66 5.50 -17.47 -0.10 0.56 16 3 Si 0.93 20.31 29.55 -169.99 -5.02 15.28 16 4 H -0.27 -5.79 7.11 56.52 0.40 -5.38 16 5 H -0.28 -6.01 7.11 56.52 0.40 -5.60 16 6 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 7 C -0.30 -8.16 9.68 -14.93 -0.14 -8.31 16 8 H 0.11 3.01 7.16 -52.49 -0.38 2.63 16 9 N -0.55 -13.54 5.29 -10.96 -0.06 -13.60 16 10 C 0.44 10.17 7.86 -10.99 -0.09 10.08 16 11 O -0.58 -15.40 16.08 -14.12 -0.23 -15.62 16 12 C 0.06 1.15 5.95 36.00 0.21 1.37 16 13 O -0.32 -5.68 9.66 -47.35 -0.46 -6.14 16 14 C 0.54 8.60 7.95 34.39 0.27 8.88 16 15 O -0.50 -8.54 15.59 -19.28 -0.30 -8.84 16 16 C -0.24 -3.21 6.47 -102.91 -0.67 -3.88 16 17 C 0.04 0.37 12.24 30.44 0.37 0.74 16 18 O 0.10 1.06 11.06 18.70 0.21 1.26 16 19 N -0.36 -4.44 11.71 34.79 0.41 -4.03 16 20 C 0.11 1.36 7.08 -79.76 -0.56 0.80 16 21 C -0.09 -1.00 5.90 -91.77 -0.54 -1.54 16 22 C -0.16 -1.44 10.17 -26.69 -0.27 -1.72 16 23 C -0.16 -1.43 10.24 -26.69 -0.27 -1.71 16 24 H 0.27 6.79 8.31 -40.82 -0.34 6.46 16 25 H 0.40 9.20 7.90 -40.82 -0.32 8.88 16 26 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 27 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 28 H 0.24 1.81 8.06 -52.49 -0.42 1.38 16 29 H 0.14 1.63 7.29 -51.93 -0.38 1.25 16 30 H 0.10 0.93 7.97 -51.93 -0.41 0.52 16 31 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 309.73 15.07 4.67 4.67 Total: -1.00 -31.81 309.73 -5.00 -36.82 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -3.16 Total: 7.81 kcal Atomic # 6 Polarization: 7.06 SS G_CDS: -1.78 Total: 5.28 kcal Atomic # 7 Polarization: -41.59 SS G_CDS: 1.07 Total: -40.51 kcal Atomic # 8 Polarization: -28.56 SS G_CDS: -0.78 Total: -29.34 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -31.81 -5.00 -36.82 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000811318666.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.412 kcal (2) G-P(sol) polarization free energy of solvation -31.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds