Wall clock time and date at job start Tue Mar 31 2020 01:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86797 * 120.00056 * 2 1 4 4 H 1.48496 * 109.47336 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47224 * 300.00074 * 3 2 1 6 6 H 1.48507 * 109.47288 * 60.00177 * 3 2 1 7 7 C 1.38954 * 120.00182 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99786 * 180.02562 * 7 2 1 9 9 N 1.37099 * 119.99955 * 359.97438 * 7 2 1 10 10 C 1.34771 * 120.00069 * 180.02562 * 9 7 2 11 11 O 1.21293 * 120.00194 * 0.02562 * 10 9 7 12 12 C 1.50698 * 120.00161 * 179.97438 * 10 9 7 13 13 O 1.45196 * 109.47190 * 180.02562 * 12 10 9 14 14 C 1.34764 * 116.99787 * 180.02562 * 13 12 10 15 15 O 1.21524 * 120.00438 * 359.97438 * 14 13 12 16 16 C 1.47255 * 119.99771 * 179.97438 * 14 13 12 17 17 C 1.37437 * 128.57491 * 0.02562 * 16 14 13 18 18 O 1.33474 * 106.32842 * 179.97438 * 17 16 14 19 19 N 1.20652 * 113.17171 * 0.02562 * 18 17 16 20 20 C 1.29992 * 112.32861 * 359.97438 * 19 18 17 21 21 C 1.50695 * 127.34318 * 180.02562 * 20 19 18 22 22 C 1.53007 * 117.49563 * 8.72845 * 21 20 19 23 23 C 1.53003 * 117.50308 * 300.06715 * 21 20 19 24 24 H 0.97000 * 120.00640 * 359.97438 * 1 2 3 25 25 H 0.96998 * 119.99434 * 359.97438 * 9 7 2 26 26 H 1.09004 * 109.47072 * 59.99934 * 12 10 9 27 27 H 1.09004 * 109.47040 * 300.00236 * 12 10 9 28 28 H 1.08002 * 126.83551 * 0.02562 * 17 16 14 29 29 H 1.09003 * 115.55034 * 154.39270 * 21 20 19 30 30 H 1.08991 * 117.49791 * 359.97438 * 22 21 20 31 31 H 1.08999 * 117.49735 * 145.02193 * 22 21 20 32 32 H 1.09003 * 117.49822 * 214.97976 * 23 21 20 33 33 H 1.09000 * 117.49143 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7080 1.3464 -0.0006 5 1 1.8893 2.3964 -1.2125 6 1 1.8894 2.3965 1.2126 7 6 2.0089 -1.2034 -0.0005 8 1 3.0888 -1.2033 -0.0001 9 7 1.3234 -2.3907 -0.0005 10 6 1.9973 -3.5578 -0.0005 11 8 3.2102 -3.5579 -0.0001 12 6 1.2438 -4.8629 0.0000 13 8 2.1874 -5.9665 0.0005 14 6 1.6723 -7.2118 0.0006 15 8 0.4675 -7.3711 0.0006 16 6 2.5693 -8.3796 0.0005 17 6 3.9435 -8.4047 0.0009 18 8 4.2953 -9.6922 0.0012 19 7 3.3505 -10.4425 0.0005 20 6 2.2160 -9.8081 0.0002 21 6 0.8334 -10.4075 0.0000 22 6 0.7189 -11.9193 0.2061 23 6 0.4559 -11.3125 -1.1745 24 1 -0.4851 0.8400 0.0004 25 1 0.3534 -2.3906 0.0002 26 1 0.6168 -4.9209 -0.8897 27 1 0.6175 -4.9205 0.8903 28 1 4.6066 -7.5522 0.0017 29 1 0.0492 -9.7809 0.4248 30 1 1.6436 -12.4802 0.3413 31 1 -0.1409 -12.2872 0.7660 32 1 -0.5768 -11.2815 -1.5222 33 1 1.2075 -11.4739 -1.9472 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000811318666.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:10:23 Heat of formation + Delta-G solvation = -51.068907 kcal Electronic energy + Delta-G solvation = -20649.109082 eV Core-core repulsion = 17064.872647 eV Total energy + Delta-G solvation = -3584.236434 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.094 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -46.11179 -41.55180 -40.00885 -38.55160 -37.48358 -36.02681 -34.47638 -33.41850 -33.12094 -30.16732 -27.05961 -26.00675 -25.37874 -23.38060 -22.36825 -21.50821 -21.28246 -20.07001 -19.49227 -18.87724 -18.36867 -17.87198 -17.68917 -17.29549 -16.59753 -16.36715 -15.90873 -15.71583 -15.59438 -14.86003 -14.50713 -14.01899 -13.65489 -13.55849 -13.22165 -12.94400 -12.85821 -12.60323 -12.45714 -12.39702 -12.10346 -11.99615 -11.92572 -11.57816 -11.41485 -10.99566 -10.64349 -10.51580 -10.11250 -8.52040 -6.02398 -0.22763 0.49829 1.08857 1.35286 1.44795 1.58842 1.65235 1.87424 2.02277 2.30468 2.69898 2.81127 3.06967 3.09197 3.13926 3.65171 3.76915 3.85163 3.98859 4.00608 4.09935 4.15273 4.22014 4.53609 4.61979 4.67616 4.90436 5.03303 5.14928 5.17517 5.38202 5.89400 6.41715 6.52429 7.02398 7.03528 7.40388 7.93104 8.65140 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.039677 B = 0.003087 C = 0.002889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.521386 B = 9068.888094 C = 9689.379525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.009 4.009 3 Si 0.997 3.003 4 H -0.270 1.270 5 H -0.271 1.271 6 H -0.270 1.270 7 C -0.336 4.336 8 H 0.086 0.914 9 N -0.558 5.558 10 C 0.438 3.562 11 O -0.615 6.615 12 C 0.074 3.926 13 O -0.333 6.333 14 C 0.548 3.452 15 O -0.517 6.517 16 C -0.274 4.274 17 C 0.067 3.933 18 O 0.101 5.899 19 N -0.368 5.368 20 C 0.104 3.896 21 C -0.116 4.116 22 C -0.149 4.149 23 C -0.150 4.150 24 H 0.280 0.720 25 H 0.400 0.600 26 H 0.110 0.890 27 H 0.110 0.890 28 H 0.270 0.730 29 H 0.130 0.870 30 H 0.098 0.902 31 H 0.124 0.876 32 H 0.122 0.878 33 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.986 -18.717 -0.407 18.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.209 4.209 3 Si 0.820 3.180 4 H -0.194 1.194 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.465 4.465 8 H 0.104 0.896 9 N -0.195 5.195 10 C 0.225 3.775 11 O -0.502 6.502 12 C -0.003 4.003 13 O -0.248 6.248 14 C 0.393 3.607 15 O -0.407 6.407 16 C -0.280 4.280 17 C -0.015 4.015 18 O 0.046 5.954 19 N -0.077 5.077 20 C -0.058 4.058 21 C -0.135 4.135 22 C -0.186 4.186 23 C -0.188 4.188 24 H 0.090 0.910 25 H 0.235 0.765 26 H 0.128 0.872 27 H 0.128 0.872 28 H 0.285 0.715 29 H 0.148 0.852 30 H 0.116 0.884 31 H 0.143 0.857 32 H 0.140 0.860 33 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 1.687 -19.846 -0.403 19.922 hybrid contribution -0.771 1.891 0.032 2.042 sum 0.917 -17.955 -0.371 17.982 Atomic orbital electron populations 1.69670 1.06959 1.29658 1.49258 1.26111 0.96553 1.02576 0.95707 0.84811 0.78157 0.76667 0.78359 1.19443 1.19575 1.19567 1.19758 0.92968 0.83297 1.50483 0.89622 1.41738 1.09605 1.04180 1.63988 1.20023 0.88082 0.85249 0.84163 1.90523 1.15284 1.87658 1.56733 1.22585 0.90016 0.81969 1.05745 1.86553 1.40357 1.14153 1.83770 1.19719 0.86318 0.82209 0.72430 1.90819 1.16140 1.86759 1.47003 1.21159 0.94119 0.91806 1.20926 1.27348 0.95111 0.88707 0.90358 1.84598 1.30270 1.14001 1.66576 1.73628 0.95209 1.17419 1.21433 1.24078 0.95425 0.87841 0.98472 1.20473 0.90028 0.94715 1.08252 1.23142 1.04588 0.91431 0.99428 1.23142 1.03913 1.00339 0.91395 0.90993 0.76543 0.87247 0.87248 0.71495 0.85221 0.88364 0.85748 0.85992 0.88848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -47.71 13.05 21.66 0.28 -47.43 16 2 C -0.01 -0.45 5.50 84.93 0.47 0.02 16 3 Si 1.00 41.16 29.55 68.60 2.03 43.19 16 4 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 5 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 6 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 7 C -0.34 -18.36 9.68 84.04 0.81 -17.55 16 8 H 0.09 4.96 7.16 -2.91 -0.02 4.94 16 9 N -0.56 -27.66 5.29 -306.99 -1.62 -29.28 16 10 C 0.44 20.43 7.86 87.66 0.69 21.12 16 11 O -0.62 -33.24 16.08 15.73 0.25 -32.99 16 12 C 0.07 2.63 5.95 71.24 0.42 3.05 16 13 O -0.33 -11.51 9.66 -50.36 -0.49 -12.00 16 14 C 0.55 16.97 7.95 70.19 0.56 17.52 16 15 O -0.52 -17.33 15.59 19.76 0.31 -17.02 16 16 C -0.27 -7.07 6.47 -18.75 -0.12 -7.19 16 17 C 0.07 1.28 12.24 67.63 0.83 2.11 16 18 O 0.10 2.07 11.06 77.16 0.85 2.93 16 19 N -0.37 -8.71 11.71 -44.75 -0.52 -9.23 16 20 C 0.10 2.57 7.08 45.17 0.32 2.89 16 21 C -0.12 -2.49 5.90 -11.54 -0.07 -2.55 16 22 C -0.15 -2.38 10.17 30.62 0.31 -2.07 16 23 C -0.15 -2.52 10.24 30.62 0.31 -2.21 16 24 H 0.28 13.62 8.31 -92.71 -0.77 12.85 16 25 H 0.40 18.71 7.90 -92.71 -0.73 17.98 16 26 H 0.11 3.47 8.14 -2.39 -0.02 3.45 16 27 H 0.11 3.47 8.14 -2.39 -0.02 3.45 16 28 H 0.27 3.40 8.06 -2.91 -0.02 3.37 16 29 H 0.13 3.01 7.29 -2.39 -0.02 2.99 16 30 H 0.10 1.66 7.97 -2.39 -0.02 1.64 16 31 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.12 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -67.94 309.73 6.07 -61.87 By element: Atomic # 1 Polarization: 24.38 SS G_CDS: 0.44 Total: 24.82 kcal Atomic # 6 Polarization: 10.60 SS G_CDS: 4.54 Total: 15.14 kcal Atomic # 7 Polarization: -84.07 SS G_CDS: -1.86 Total: -85.94 kcal Atomic # 8 Polarization: -60.01 SS G_CDS: 0.93 Total: -59.08 kcal Atomic # 14 Polarization: 41.16 SS G_CDS: 2.03 Total: 43.19 kcal Total: -67.94 6.07 -61.87 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000811318666.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.800 kcal (2) G-P(sol) polarization free energy of solvation -67.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds