Wall clock time and date at job start Tue Mar 31 2020 01:07:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86806 * 120.00099 * 2 1 4 4 H 1.48506 * 109.46851 * 269.99514 * 3 2 1 5 5 H 1.48499 * 109.46945 * 29.99435 * 3 2 1 6 6 H 1.48495 * 109.47264 * 149.99775 * 3 2 1 7 7 C 1.37873 * 119.99886 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00335 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99921 * 180.02562 * 7 2 1 10 10 C 1.53006 * 109.47065 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47065 * 179.97438 * 10 9 7 12 12 O 1.20829 * 119.99658 * 0.02562 * 11 10 9 13 13 O 1.34224 * 120.00141 * 179.97438 * 11 10 9 14 14 C 1.45199 * 117.00244 * 180.02562 * 13 11 10 15 15 C 1.53003 * 109.47066 * 180.02562 * 14 13 11 16 16 S 1.81394 * 109.46998 * 180.02562 * 15 14 13 17 17 C 1.76199 * 103.00056 * 180.02562 * 16 15 14 18 18 C 1.38975 * 120.07816 * 180.02562 * 17 16 15 19 19 C 1.38086 * 119.91892 * 179.97438 * 18 17 16 20 20 C 1.38310 * 120.07752 * 359.97438 * 19 18 17 21 21 C 1.38301 * 120.16067 * 0.02562 * 20 19 18 22 22 C 1.38081 * 120.08205 * 359.97438 * 21 20 19 23 23 H 0.97002 * 119.99790 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.46743 * 60.00881 * 9 7 2 25 25 H 1.09000 * 109.47399 * 300.00400 * 9 7 2 26 26 H 1.09000 * 109.46943 * 60.00610 * 10 9 7 27 27 H 1.09000 * 109.47018 * 300.00240 * 10 9 7 28 28 H 1.08998 * 109.46650 * 60.00429 * 14 13 11 29 29 H 1.08996 * 109.47250 * 300.00613 * 14 13 11 30 30 H 1.09000 * 109.46939 * 60.00113 * 15 14 13 31 31 H 1.09004 * 109.47160 * 299.99956 * 15 14 13 32 32 H 1.07995 * 120.04427 * 359.69664 * 18 17 16 33 33 H 1.08000 * 119.96089 * 179.97438 * 19 18 17 34 34 H 1.07995 * 119.91521 * 179.97438 * 20 19 18 35 35 H 1.07996 * 119.95950 * 179.97438 * 21 20 19 36 36 H 1.07997 * 120.04201 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0044 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0215 -2.6366 0.0010 11 6 5.5285 -2.6366 0.0009 12 8 6.1326 -1.5902 0.0015 13 8 6.1996 -3.7990 0.0014 14 6 7.6496 -3.7231 0.0019 15 6 8.2344 -5.1369 0.0016 16 16 10.0458 -5.0420 0.0030 17 6 10.5315 -6.7358 0.0018 18 6 11.8795 -7.0738 0.0030 19 6 12.2564 -8.4022 0.0026 20 6 11.2942 -9.3958 0.0015 21 6 9.9519 -9.0630 0.0003 22 6 9.5675 -7.7368 0.0007 23 1 -0.4850 0.8401 -0.0004 24 1 3.8744 -0.6801 0.8912 25 1 3.8752 -0.6804 -0.8888 26 1 3.6585 -3.1502 -0.8893 27 1 3.6577 -3.1506 0.8907 28 1 7.9852 -3.1909 0.8919 29 1 7.9859 -3.1910 -0.8880 30 1 7.8987 -5.6688 -0.8886 31 1 7.8981 -5.6693 0.8914 32 1 12.6314 -6.2986 -0.0003 33 1 13.3038 -8.6657 0.0031 34 1 11.5920 -10.4339 0.0008 35 1 9.2033 -9.8415 -0.0009 36 1 8.5191 -7.4777 -0.0006 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812615128.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:07:11 Heat of formation + Delta-G solvation = -91.594079 kcal Electronic energy + Delta-G solvation = -17813.177086 eV Core-core repulsion = 14773.476563 eV Total energy + Delta-G solvation = -3039.700523 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.092 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.56355 -39.84431 -37.92692 -35.64477 -33.65053 -33.07203 -31.94987 -31.79129 -28.48033 -25.23125 -23.77807 -23.58335 -22.97869 -21.51884 -19.41811 -18.79310 -18.49084 -17.93833 -17.24191 -17.02828 -16.29064 -16.11323 -16.02240 -15.60749 -15.00704 -14.82709 -14.68148 -14.40403 -14.05534 -14.01140 -13.53917 -13.38642 -13.10657 -12.92577 -12.43490 -12.24889 -12.07989 -12.03520 -11.83033 -11.74024 -11.50384 -11.41327 -11.27984 -10.79250 -10.76905 -9.96518 -8.50793 -8.32200 -6.36371 0.13139 0.21414 0.39158 1.15699 1.23352 1.34237 1.36620 1.49918 1.81507 2.34132 2.74483 3.03260 3.44181 3.61419 3.88249 3.89885 3.98264 4.13024 4.24208 4.30841 4.35545 4.40745 4.48210 4.52483 4.54936 4.77192 4.84636 5.04562 5.22633 5.27508 5.31462 5.35710 5.43587 5.55061 5.57939 5.96042 6.20741 6.66490 6.75217 7.28838 8.83205 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.052472 B = 0.002421 C = 0.002321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.485422 B =11560.352895 C =12062.786975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.014 3.986 3 Si 0.939 3.061 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.258 1.258 7 C -0.531 4.531 8 H 0.053 0.947 9 C 0.000 4.000 10 C -0.090 4.090 11 C 0.471 3.529 12 O -0.539 6.539 13 O -0.351 6.351 14 C 0.078 3.922 15 C -0.102 4.102 16 S -0.115 6.115 17 C -0.100 4.100 18 C -0.115 4.115 19 C -0.105 4.105 20 C -0.127 4.127 21 C -0.107 4.107 22 C -0.147 4.147 23 H 0.268 0.732 24 H 0.017 0.983 25 H 0.016 0.984 26 H 0.117 0.883 27 H 0.116 0.884 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.111 0.889 31 H 0.111 0.889 32 H 0.133 0.867 33 H 0.152 0.848 34 H 0.150 0.850 35 H 0.146 0.854 36 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.450 -19.677 -0.005 32.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.184 4.184 3 Si 0.763 3.237 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.182 1.182 7 C -0.569 4.569 8 H 0.071 0.929 9 C -0.037 4.037 10 C -0.128 4.128 11 C 0.316 3.684 12 O -0.429 6.429 13 O -0.268 6.268 14 C 0.003 3.997 15 C -0.250 4.250 16 S 0.128 5.872 17 C -0.213 4.213 18 C -0.138 4.138 19 C -0.124 4.124 20 C -0.147 4.147 21 C -0.127 4.127 22 C -0.171 4.171 23 H 0.077 0.923 24 H 0.036 0.964 25 H 0.035 0.965 26 H 0.135 0.865 27 H 0.134 0.866 28 H 0.095 0.905 29 H 0.096 0.904 30 H 0.129 0.871 31 H 0.129 0.871 32 H 0.151 0.849 33 H 0.169 0.831 34 H 0.168 0.832 35 H 0.164 0.836 36 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 26.110 -18.168 -0.001 31.809 hybrid contribution -0.789 0.005 -0.019 0.789 sum 25.321 -18.163 -0.020 31.162 Atomic orbital electron populations 1.70018 1.07835 1.28192 1.52148 1.25808 0.95519 1.02920 0.94186 0.85825 0.79315 0.79362 0.79208 1.19289 1.20492 1.18221 1.21335 0.90878 0.93924 1.50759 0.92910 1.19343 0.94399 0.92833 0.97156 1.21363 0.84048 1.00672 1.06676 1.24402 0.92349 0.80942 0.70727 1.90632 1.71138 1.34217 1.46876 1.86489 1.21466 1.34718 1.84146 1.22592 0.76893 0.96424 1.03818 1.23445 0.93935 0.99267 1.08364 1.85527 1.03744 1.05081 1.92822 1.21842 0.97599 0.95675 1.06141 1.20998 0.93486 0.97884 1.01450 1.21447 1.01215 0.91609 0.98151 1.21601 0.92741 1.00871 0.99517 1.21421 0.97397 0.95687 0.98167 1.21447 0.99042 0.93530 1.03047 0.92303 0.96427 0.96544 0.86542 0.86554 0.90452 0.90434 0.87071 0.87085 0.84928 0.83055 0.83227 0.83645 0.85117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.07 13.96 21.45 0.30 -57.78 16 2 C 0.01 0.80 5.47 84.65 0.46 1.26 16 3 Si 0.94 45.42 27.47 68.60 1.88 47.30 16 4 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 5 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 6 H -0.26 -12.25 6.54 99.48 0.65 -11.60 16 7 C -0.53 -29.82 9.66 25.60 0.25 -29.57 16 8 H 0.05 3.13 7.99 -2.91 -0.02 3.10 16 9 C 0.00 0.02 3.33 29.85 0.10 0.11 16 10 C -0.09 -3.31 5.75 29.85 0.17 -3.14 16 11 C 0.47 16.52 7.96 71.24 0.57 17.08 16 12 O -0.54 -22.23 15.73 21.95 0.35 -21.89 16 13 O -0.35 -9.98 10.22 -51.36 -0.52 -10.50 16 14 C 0.08 1.85 5.47 71.98 0.39 2.25 16 15 C -0.10 -1.85 4.71 71.98 0.34 -1.51 16 16 S -0.11 -2.21 21.92 -56.49 -1.24 -3.45 16 17 C -0.10 -1.80 6.11 22.62 0.14 -1.66 16 18 C -0.11 -1.78 9.79 22.41 0.22 -1.56 16 19 C -0.10 -1.23 10.04 22.25 0.22 -1.01 16 20 C -0.13 -1.39 10.04 22.30 0.22 -1.16 16 21 C -0.11 -1.36 10.04 22.25 0.22 -1.14 16 22 C -0.15 -2.35 9.36 22.41 0.21 -2.14 16 23 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 24 H 0.02 0.86 7.16 -2.39 -0.02 0.84 16 25 H 0.02 0.79 7.53 -2.39 -0.02 0.77 16 26 H 0.12 3.90 8.14 -2.39 -0.02 3.88 16 27 H 0.12 3.90 8.14 -2.39 -0.02 3.88 16 28 H 0.08 1.89 8.13 -2.39 -0.02 1.87 16 29 H 0.08 1.89 8.13 -2.39 -0.02 1.87 16 30 H 0.11 1.80 7.75 -2.39 -0.02 1.78 16 31 H 0.11 1.80 7.75 -2.39 -0.02 1.78 16 32 H 0.13 1.81 8.06 -2.91 -0.02 1.78 16 33 H 0.15 0.96 8.06 -2.91 -0.02 0.94 16 34 H 0.15 0.83 8.06 -2.91 -0.02 0.80 16 35 H 0.15 1.20 8.06 -2.91 -0.02 1.18 16 36 H 0.13 1.85 5.88 -2.91 -0.02 1.83 16 Total: -1.00 -68.59 324.95 5.30 -63.29 By element: Atomic # 1 Polarization: 4.19 SS G_CDS: 1.01 Total: 5.20 kcal Atomic # 6 Polarization: -25.70 SS G_CDS: 3.52 Total: -22.18 kcal Atomic # 7 Polarization: -58.07 SS G_CDS: 0.30 Total: -57.78 kcal Atomic # 8 Polarization: -32.21 SS G_CDS: -0.18 Total: -32.39 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 1.88 Total: 47.30 kcal Atomic # 16 Polarization: -2.21 SS G_CDS: -1.24 Total: -3.45 kcal Total: -68.59 5.30 -63.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812615128.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.299 kcal (2) G-P(sol) polarization free energy of solvation -68.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds