Wall clock time and date at job start Tue Mar 31 2020 01:15:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86803 * 119.99681 * 2 1 4 4 H 1.48499 * 109.46709 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47000 * 299.99018 * 3 2 1 6 6 H 1.48491 * 109.47532 * 59.99546 * 3 2 1 7 7 C 1.38794 * 119.99917 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99802 * 180.02562 * 7 2 1 9 9 S 1.76201 * 120.00296 * 0.02562 * 7 2 1 10 10 C 1.81001 * 99.99858 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.46936 * 179.97438 * 10 9 7 12 12 C 1.52995 * 109.47051 * 179.97438 * 11 10 9 13 13 N 1.46506 * 109.46824 * 180.02562 * 12 11 10 14 14 C 1.36853 * 126.49609 * 264.68831 * 13 12 11 15 15 C 1.34856 * 107.02565 * 179.84589 * 14 13 12 16 16 N 1.33798 * 108.37102 * 0.42384 * 15 14 13 17 17 C 1.31405 * 109.25557 * 359.73580 * 16 15 14 18 18 C 1.48015 * 125.83140 * 180.02562 * 17 16 15 19 19 N 1.34177 * 126.69612 * 179.97438 * 18 17 16 20 20 N 1.28983 * 107.25257 * 180.02562 * 19 18 17 21 21 N 1.28720 * 108.98434 * 359.97438 * 20 19 18 22 22 H 0.97005 * 125.32048 * 179.97438 * 21 20 19 23 23 N 1.28871 * 109.35772 * 359.73297 * 21 20 19 24 24 H 0.97004 * 120.00052 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.46997 * 60.00321 * 10 9 7 26 26 H 1.08999 * 109.47563 * 299.99482 * 10 9 7 27 27 H 1.09003 * 109.46645 * 60.00009 * 11 10 9 28 28 H 1.09002 * 109.47370 * 300.00275 * 11 10 9 29 29 H 1.08999 * 109.46886 * 60.00687 * 12 11 10 30 30 H 1.08999 * 109.47559 * 299.99918 * 12 11 10 31 31 H 1.08008 * 126.48744 * 0.02562 * 14 13 12 32 32 H 1.08001 * 125.81731 * 180.19603 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8915 2.3966 1.2123 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5159 -3.8913 0.0005 11 6 1.9794 -5.3243 0.0012 12 6 3.1515 -6.3076 0.0005 13 7 2.6377 -7.6797 0.0005 14 6 2.4481 -8.4778 1.0959 15 6 1.9598 -9.6526 0.6487 16 7 1.8591 -9.5875 -0.6839 17 6 2.2634 -8.4056 -1.0918 18 6 2.3048 -7.9413 -2.4966 19 7 2.7134 -6.7398 -2.9323 20 7 2.5928 -6.7372 -4.2164 21 7 2.1308 -7.8771 -4.5960 22 1 1.9487 -8.1308 -5.5144 23 7 1.9528 -8.6303 -3.5656 24 1 -0.4850 0.8401 -0.0004 25 1 3.1245 -3.7313 0.8905 26 1 3.1245 -3.7314 -0.8895 27 1 1.3706 -5.4846 -0.8886 28 1 1.3710 -5.4841 0.8914 29 1 3.7606 -6.1474 0.8901 30 1 3.7595 -6.1478 -0.8899 31 1 2.6485 -8.2154 2.1243 32 1 1.6984 -10.5027 1.2614 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000826382092.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:15:15 Heat of formation + Delta-G solvation = 179.521722 kcal Electronic energy + Delta-G solvation = -18583.115674 eV Core-core repulsion = 15516.216773 eV Total energy + Delta-G solvation = -3066.898901 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.080 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -44.59327 -42.10422 -35.60332 -34.45372 -33.51620 -32.45036 -31.84813 -29.58727 -26.47280 -25.47543 -24.87630 -24.36708 -21.87391 -21.30726 -20.56785 -19.12693 -17.60268 -17.30385 -17.27083 -15.39090 -15.36494 -14.99915 -14.81391 -14.26804 -14.19722 -13.85771 -13.48112 -13.15173 -12.46398 -12.25473 -12.14123 -11.67859 -11.53384 -11.24012 -11.10446 -11.09096 -10.87512 -10.72519 -10.59381 -10.16539 -9.96733 -9.42860 -9.07650 -8.47761 -8.32759 -6.54645 -6.23955 -3.94466 0.82584 1.27748 1.95638 2.32175 2.57246 3.15722 3.20590 3.21585 3.29501 3.35396 3.56138 4.01811 4.20715 4.69915 4.81006 4.94396 5.12506 5.14969 5.24114 5.28631 5.38257 5.43042 5.49375 5.66994 5.85407 6.10670 6.19390 6.22113 6.44845 6.55736 6.63721 6.88373 7.60005 7.78306 8.02343 8.35864 9.22603 10.84328 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.021780 B = 0.003998 C = 0.003557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.254065 B = 7001.522756 C = 7869.101433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.071 3.929 3 Si 0.919 3.081 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.515 4.515 8 H 0.074 0.926 9 S -0.129 6.129 10 C -0.110 4.110 11 C -0.106 4.106 12 C 0.100 3.900 13 N -0.426 5.426 14 C -0.022 4.022 15 C -0.029 4.029 16 N -0.446 5.446 17 C 0.264 3.736 18 C 0.256 3.744 19 N -0.258 5.258 20 N -0.039 5.039 21 N -0.227 5.227 22 H 0.477 0.523 23 N -0.262 5.262 24 H 0.267 0.733 25 H 0.062 0.938 26 H 0.068 0.932 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.097 0.903 30 H 0.105 0.895 31 H 0.185 0.815 32 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.166 -17.505 -3.316 18.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.138 4.138 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.663 4.663 8 H 0.092 0.908 9 S 0.100 5.900 10 C -0.259 4.259 11 C -0.145 4.145 12 C -0.023 4.023 13 N -0.107 5.107 14 C -0.159 4.159 15 C -0.181 4.181 16 N -0.167 5.167 17 C 0.004 3.996 18 C -0.025 4.025 19 N -0.132 5.132 20 N -0.034 5.034 21 N -0.073 5.073 22 H 0.332 0.668 23 N -0.115 5.115 24 H 0.076 0.924 25 H 0.081 0.919 26 H 0.087 0.913 27 H 0.092 0.908 28 H 0.089 0.911 29 H 0.115 0.885 30 H 0.123 0.877 31 H 0.202 0.798 32 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 4.790 -17.592 -4.315 18.736 hybrid contribution 1.849 1.502 0.355 2.409 sum 6.640 -16.090 -3.960 17.851 Atomic orbital electron populations 1.70035 1.05948 1.27237 1.47347 1.25013 0.95066 0.99105 0.94583 0.86108 0.79668 0.81842 0.77881 1.19559 1.20562 1.20589 1.22727 0.94582 0.90649 1.58385 0.90795 1.84694 1.09100 0.99390 1.96860 1.23148 1.03282 0.96199 1.03303 1.21564 0.96431 0.92912 1.03567 1.22351 0.97995 0.76562 1.05355 1.45680 1.45962 1.13331 1.05762 1.23007 1.07420 0.92596 0.92908 1.22362 1.06515 0.98611 0.90568 1.70354 1.17953 1.16041 1.12324 1.18542 1.08213 0.89134 0.83739 1.21617 1.01147 0.88326 0.91437 1.76260 1.18622 1.17753 1.00603 1.78983 1.11849 1.05666 1.06872 1.47824 1.40740 1.07417 1.11363 0.66783 1.75097 1.21198 1.21412 0.93770 0.92354 0.91910 0.91328 0.90809 0.91050 0.88514 0.87667 0.79777 0.80429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.98 13.22 55.49 0.73 -25.25 16 2 C 0.07 2.02 5.49 -17.43 -0.10 1.92 16 3 Si 0.92 21.44 29.55 -169.99 -5.02 16.41 16 4 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.52 -14.66 9.50 30.94 0.29 -14.36 16 8 H 0.07 2.03 7.80 -52.48 -0.41 1.62 16 9 S -0.13 -3.35 21.44 -107.50 -2.30 -5.65 16 10 C -0.11 -2.15 5.67 37.16 0.21 -1.93 16 11 C -0.11 -1.70 5.54 -26.73 -0.15 -1.85 16 12 C 0.10 1.28 5.62 -4.04 -0.02 1.25 16 13 N -0.43 -5.53 2.79 -114.27 -0.32 -5.85 16 14 C -0.02 -0.24 11.57 -16.51 -0.19 -0.43 16 15 C -0.03 -0.33 11.84 -17.89 -0.21 -0.55 16 16 N -0.45 -6.55 11.27 -11.19 -0.13 -6.68 16 17 C 0.26 3.90 7.86 -154.68 -1.22 2.68 16 18 C 0.26 3.75 8.14 -156.26 -1.27 2.48 16 19 N -0.26 -3.83 10.73 32.10 0.34 -3.49 16 20 N -0.04 -0.49 13.47 60.35 0.81 0.32 16 21 N -0.23 -2.19 7.90 60.35 0.48 -1.72 16 22 H 0.48 2.07 8.96 -340.34 -3.05 -0.98 16 23 N -0.26 -3.35 12.41 32.11 0.40 -2.96 16 24 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 25 H 0.06 1.16 8.14 -51.92 -0.42 0.74 16 26 H 0.07 1.34 8.14 -51.92 -0.42 0.92 16 27 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 28 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 29 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.11 1.39 6.78 -51.93 -0.35 1.03 16 31 H 0.19 1.29 8.06 -52.48 -0.42 0.87 16 32 H 0.18 1.43 8.06 -52.49 -0.42 1.01 16 LS Contribution 304.01 15.07 4.58 4.58 Total: -1.00 -35.38 304.01 -8.99 -44.36 By element: Atomic # 1 Polarization: 2.59 SS G_CDS: -5.91 Total: -3.31 kcal Atomic # 6 Polarization: -8.12 SS G_CDS: -2.65 Total: -10.78 kcal Atomic # 7 Polarization: -47.93 SS G_CDS: 2.32 Total: -45.61 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: -3.35 SS G_CDS: -2.30 Total: -5.65 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -35.38 -8.99 -44.36 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826382092.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 223.883 kcal (2) G-P(sol) polarization free energy of solvation -35.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 188.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 179.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds