Wall clock time and date at job start Tue Mar 31 2020 01:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.47411 * 2 1 4 4 C 1.50709 * 109.46602 * 119.99967 * 2 1 3 5 5 H 1.07996 * 119.99735 * 120.00215 * 4 2 1 6 6 C 1.37878 * 119.99899 * 299.71825 * 4 2 1 7 7 N 1.31518 * 119.99845 * 0.28136 * 6 4 2 8 8 Si 1.86796 * 119.99872 * 180.27898 * 6 4 2 9 9 H 1.48497 * 109.47169 * 60.00274 * 8 6 4 10 10 H 1.48493 * 109.47093 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.46988 * 300.00104 * 8 6 4 12 12 N 1.46500 * 109.46971 * 239.99303 * 2 1 3 13 13 C 1.39714 * 119.99417 * 85.00903 * 12 2 1 14 14 C 1.38659 * 120.00561 * 354.16302 * 13 12 2 15 15 C 1.39500 * 119.77174 * 179.97438 * 14 13 12 16 16 C 1.47748 * 120.11589 * 179.97438 * 15 14 13 17 17 O 1.21470 * 120.00126 * 0.02562 * 16 15 14 18 18 O 1.34714 * 119.99696 * 180.02562 * 16 15 14 19 19 C 1.39665 * 119.77405 * 0.02562 * 15 14 13 20 20 C 1.37971 * 119.99226 * 0.02562 * 19 15 14 21 21 C 1.38254 * 120.23719 * 359.74218 * 20 19 15 22 22 N 1.48024 * 119.88503 * 180.28241 * 21 20 19 23 23 O 1.21799 * 120.00213 * 6.15447 * 22 21 20 24 24 O 1.21797 * 119.99597 * 186.16165 * 22 21 20 25 25 H 1.09000 * 109.47411 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.46939 * 300.00272 * 1 2 3 27 27 H 1.09003 * 109.46680 * 59.99930 * 1 2 3 28 28 H 0.96994 * 119.99599 * 179.97438 * 7 6 4 29 29 H 0.96994 * 120.00088 * 264.99973 * 12 2 1 30 30 H 1.08010 * 120.11334 * 359.96301 * 14 13 12 31 31 H 0.96705 * 116.99566 * 180.02562 * 18 16 15 32 32 H 1.07991 * 120.00803 * 180.02562 * 19 15 14 33 33 H 1.08008 * 119.87974 * 180.02562 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2306 5 1 2.6532 -1.5885 1.1315 6 6 1.7039 -0.2360 2.4828 7 7 0.9478 0.8334 2.6034 8 14 2.3328 -1.1120 4.0080 9 1 3.8178 -1.1115 4.0022 10 1 1.8418 -0.4092 5.2204 11 1 1.8384 -2.5123 4.0138 12 7 2.0183 -0.6908 -1.1961 13 6 2.1519 0.0062 -2.3996 14 6 1.7097 1.3170 -2.4945 15 6 1.8459 2.0085 -3.6984 16 6 1.3768 3.4052 -3.8082 17 8 0.8719 3.9535 -2.8490 18 8 1.5091 4.0706 -4.9720 19 6 2.4263 1.3757 -4.7999 20 6 2.8621 0.0708 -4.6951 21 6 2.7314 -0.6131 -3.5006 22 7 3.2073 -2.0107 -3.3951 23 8 3.8130 -2.5195 -4.3213 24 8 2.9931 -2.6521 -2.3821 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 0.7165 1.1669 3.4843 29 1 2.2490 -1.6319 -1.1524 30 1 1.2611 1.8008 -1.6394 31 1 1.1878 4.9824 -4.9953 32 1 2.5340 1.9076 -5.7335 33 1 3.3110 -0.4167 -5.5479 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833515765.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:50:39 Heat of formation + Delta-G solvation = -62.665506 kcal Electronic energy + Delta-G solvation = -21693.427891 eV Core-core repulsion = 18108.688591 eV Total energy + Delta-G solvation = -3584.739300 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.094 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.92788 -40.50889 -39.02569 -36.64666 -36.24100 -35.77915 -33.15356 -31.98459 -30.30152 -28.16048 -26.89892 -25.40698 -23.76848 -22.76541 -21.55404 -20.49754 -18.96367 -18.51451 -18.13500 -17.68489 -17.22490 -16.80621 -15.76656 -15.58157 -15.38921 -14.54445 -14.37995 -14.06753 -13.61867 -13.47978 -13.09080 -12.65897 -12.16755 -11.72312 -11.69744 -11.36789 -11.24598 -11.11528 -10.93578 -10.89049 -10.87075 -10.72013 -10.41895 -10.29590 -10.01546 -9.53250 -9.28885 -8.66154 -7.34264 -6.30412 -4.40201 -0.10234 1.23818 1.40036 1.77584 2.43086 2.75139 3.20297 3.24814 3.27465 3.56143 3.78396 4.26146 4.47899 4.80693 4.92996 5.02708 5.06623 5.13576 5.57767 5.86494 5.91992 6.09596 6.26046 6.33237 6.42115 6.63265 6.70220 6.76882 7.00467 7.47104 7.53343 7.70846 7.76577 7.89017 7.96929 8.33102 8.65841 9.27814 10.75743 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.014489 B = 0.006182 C = 0.004507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.080210 B = 4528.406550 C = 6210.902127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.250 3.750 3 H 0.048 0.952 4 C -0.537 4.537 5 H 0.067 0.933 6 C 0.070 3.930 7 N -0.884 5.884 8 Si 0.907 3.093 9 H -0.275 1.275 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.668 5.668 13 C 0.288 3.712 14 C -0.129 4.129 15 C -0.033 4.033 16 C 0.525 3.475 17 O -0.495 6.495 18 O -0.509 6.509 19 C -0.156 4.156 20 C -0.018 4.018 21 C -0.131 4.131 22 N 0.057 4.943 23 O -0.179 6.179 24 O -0.200 6.200 25 H 0.036 0.964 26 H 0.098 0.902 27 H 0.015 0.985 28 H 0.268 0.732 29 H 0.418 0.582 30 H 0.165 0.835 31 H 0.415 0.585 32 H 0.149 0.851 33 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.888 4.211 -13.889 14.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.149 3.851 3 H 0.066 0.934 4 C -0.575 4.575 5 H 0.085 0.915 6 C -0.134 4.134 7 N -0.521 5.521 8 Si 0.734 3.266 9 H -0.200 1.200 10 H -0.210 1.210 11 H -0.199 1.199 12 N -0.296 5.296 13 C 0.164 3.836 14 C -0.152 4.152 15 C -0.036 4.036 16 C 0.368 3.632 17 O -0.383 6.383 18 O -0.321 6.321 19 C -0.178 4.178 20 C -0.037 4.037 21 C -0.225 4.225 22 N 0.562 4.438 23 O -0.391 6.391 24 O -0.398 6.398 25 H 0.055 0.945 26 H 0.117 0.883 27 H 0.034 0.966 28 H 0.078 0.922 29 H 0.266 0.734 30 H 0.182 0.818 31 H 0.274 0.726 32 H 0.167 0.833 33 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 0.509 4.637 -13.140 13.944 hybrid contribution 0.256 -0.464 0.889 1.035 sum 0.765 4.173 -12.251 12.965 Atomic orbital electron populations 1.22233 0.97525 1.00341 1.01289 1.19186 0.91701 0.93806 0.80434 0.93440 1.21073 1.33166 1.13667 0.89614 0.91499 1.24870 0.94514 0.94871 0.99183 1.69851 1.35524 1.22240 1.24509 0.86397 0.79318 0.79700 0.81171 1.19992 1.21005 1.19858 1.47306 1.60740 1.15103 1.06485 1.17625 0.88636 0.91288 0.86031 1.21059 1.03214 0.92171 0.98731 1.19039 0.99388 0.90345 0.94877 1.20795 0.75549 0.86823 0.80061 1.90961 1.40141 1.68731 1.38428 1.84548 1.78078 1.32437 1.37082 1.20879 1.03720 0.94027 0.99129 1.20575 0.94475 0.93609 0.95034 1.20621 1.19231 0.83967 0.98659 1.43397 0.98101 1.02681 0.99616 1.94462 1.40160 1.72735 1.31697 1.94228 1.62887 1.62264 1.20425 0.94478 0.88324 0.96561 0.92202 0.73399 0.81773 0.72606 0.83325 0.83104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.50 9.10 37.16 0.34 -3.16 16 2 C 0.25 5.83 2.23 -69.08 -0.15 5.67 16 3 H 0.05 1.18 6.76 -51.93 -0.35 0.83 16 4 C -0.54 -13.82 8.73 -34.44 -0.30 -14.12 16 5 H 0.07 1.72 7.74 -52.49 -0.41 1.31 16 6 C 0.07 1.80 5.31 -17.82 -0.09 1.70 16 7 N -0.88 -23.51 11.33 55.43 0.63 -22.88 16 8 Si 0.91 20.31 29.54 -169.99 -5.02 15.28 16 9 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 10 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 11 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 12 N -0.67 -13.79 5.11 -53.32 -0.27 -14.06 16 13 C 0.29 5.19 6.61 -83.83 -0.55 4.64 16 14 C -0.13 -2.17 8.24 -38.96 -0.32 -2.49 16 15 C -0.03 -0.46 5.87 -105.01 -0.62 -1.08 16 16 C 0.52 6.82 8.27 34.62 0.29 7.10 16 17 O -0.50 -8.10 17.13 -19.24 -0.33 -8.43 16 18 O -0.51 -4.45 12.68 -40.53 -0.51 -4.96 16 19 C -0.16 -1.81 9.61 -39.15 -0.38 -2.19 16 20 C -0.02 -0.23 9.53 -39.67 -0.38 -0.60 16 21 C -0.13 -2.17 6.86 -79.66 -0.55 -2.72 16 22 N 0.06 1.03 4.45 34.10 0.15 1.18 16 23 O -0.18 -3.12 18.45 -29.46 -0.54 -3.66 16 24 O -0.20 -3.94 15.69 -29.46 -0.46 -4.40 16 25 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 26 H 0.10 2.43 6.08 -51.93 -0.32 2.11 16 27 H 0.02 0.32 7.20 -51.93 -0.37 -0.06 16 28 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 29 H 0.42 8.77 4.96 -41.32 -0.20 8.56 16 30 H 0.16 3.05 5.43 -52.48 -0.29 2.76 16 31 H 0.42 1.72 9.11 45.56 0.42 2.13 16 32 H 0.15 1.30 7.60 -52.49 -0.40 0.90 16 33 H 0.15 1.58 7.61 -52.48 -0.40 1.18 16 LS Contribution 294.99 15.07 4.45 4.45 Total: -1.00 -28.93 294.99 -6.51 -35.44 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -1.88 Total: 9.28 kcal Atomic # 6 Polarization: -4.52 SS G_CDS: -2.72 Total: -7.24 kcal Atomic # 7 Polarization: -36.26 SS G_CDS: 0.51 Total: -35.76 kcal Atomic # 8 Polarization: -19.61 SS G_CDS: -1.85 Total: -21.46 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -28.93 -6.51 -35.44 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833515765.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.224 kcal (2) G-P(sol) polarization free energy of solvation -28.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds