Wall clock time and date at job start Tue Mar 31 2020 01:05:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86806 * 119.99797 * 2 1 4 4 H 1.48503 * 109.46803 * 270.00290 * 3 2 1 5 5 H 1.48500 * 109.47115 * 29.99791 * 3 2 1 6 6 H 1.48501 * 109.47204 * 150.00360 * 3 2 1 7 7 C 1.37871 * 120.00557 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00297 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99920 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47547 * 179.97438 * 9 7 2 11 11 N 1.46503 * 109.47391 * 180.02562 * 10 9 7 12 12 C 1.39710 * 119.99812 * 180.02562 * 11 10 9 13 13 C 1.38661 * 120.00479 * 5.89749 * 12 11 10 14 14 C 1.39510 * 119.76898 * 179.79660 * 13 12 11 15 15 C 1.47748 * 120.11393 * 180.23392 * 14 13 12 16 16 O 1.21469 * 120.00033 * 0.27150 * 15 14 13 17 17 O 1.34701 * 119.99590 * 180.27401 * 15 14 13 18 18 C 1.39665 * 119.76661 * 0.50507 * 14 13 12 19 19 C 1.37960 * 120.00306 * 359.72696 * 18 14 13 20 20 C 1.38259 * 120.23418 * 0.02562 * 19 18 14 21 21 N 1.48023 * 119.88452 * 179.97438 * 20 19 18 22 22 O 1.21794 * 119.99872 * 37.38745 * 21 20 19 23 23 O 1.21796 * 120.00014 * 217.38739 * 21 20 19 24 24 H 0.96996 * 120.00333 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.47665 * 59.99335 * 9 7 2 26 26 H 1.08999 * 109.47087 * 300.00057 * 9 7 2 27 27 H 1.08992 * 109.47329 * 59.99749 * 10 9 7 28 28 H 1.09004 * 109.46839 * 299.99782 * 10 9 7 29 29 H 0.97001 * 119.99832 * 359.97438 * 11 10 9 30 30 H 1.08007 * 120.11590 * 0.02633 * 13 12 11 31 31 H 0.96709 * 116.99711 * 179.97438 * 17 15 14 32 32 H 1.08000 * 119.99550 * 179.70635 * 18 14 13 33 33 H 1.08000 * 119.88276 * 180.02562 * 19 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0005 11 7 1.5130 -4.9308 -0.0001 12 6 2.2117 -6.1407 0.0003 13 6 3.5927 -6.1438 0.1247 14 6 4.2850 -7.3550 0.1288 15 6 5.7561 -7.3675 0.2661 16 8 6.3643 -6.3224 0.3806 17 8 6.4226 -8.5381 0.2643 18 6 3.5832 -8.5553 -0.0030 19 6 2.2096 -8.5408 -0.1310 20 6 1.5230 -7.3408 -0.1299 21 7 0.0492 -7.3343 -0.2683 22 8 -0.6164 -8.2033 0.2656 23 8 -0.4977 -6.4599 -0.9162 24 1 -0.4850 0.8400 0.0004 25 1 0.6248 -2.5571 -0.8896 26 1 0.6242 -2.5567 0.8903 27 1 2.8721 -3.6043 0.8904 28 1 2.8721 -3.6042 -0.8895 29 1 0.5430 -4.9308 0.0000 30 1 4.1302 -5.2121 0.2218 31 1 7.3844 -8.4957 0.3564 32 1 4.1159 -9.4948 -0.0051 33 1 1.6688 -9.4702 -0.2324 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833759952.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:05:46 Heat of formation + Delta-G solvation = -72.539659 kcal Electronic energy + Delta-G solvation = -20986.925100 eV Core-core repulsion = 17401.757624 eV Total energy + Delta-G solvation = -3585.167476 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.094 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.16016 -40.75166 -39.29303 -36.68528 -36.45941 -35.97683 -33.34031 -32.31432 -30.93891 -28.63270 -27.17514 -25.12614 -23.83166 -22.59986 -21.81937 -20.82761 -19.21091 -18.70924 -18.45878 -17.93525 -17.48968 -16.52920 -16.04611 -15.98511 -15.27133 -14.68192 -14.66830 -14.53953 -14.33926 -13.79294 -13.33071 -13.22779 -12.37179 -11.95508 -11.92985 -11.51589 -11.35894 -11.33499 -11.15280 -11.02217 -10.92616 -10.84257 -10.71271 -10.06818 -9.78818 -9.77533 -9.41797 -8.52472 -7.79401 -6.16657 -4.21912 -0.28752 0.89879 1.01929 1.47548 2.12734 2.50823 3.23801 3.24324 3.26606 3.31765 3.36246 4.17244 4.34309 4.52943 4.63106 4.74613 4.82737 5.20171 5.24569 5.49695 5.61685 5.79715 5.82071 5.95009 6.04828 6.09272 6.42209 6.42955 6.92020 7.42132 7.46096 7.48946 7.52014 7.72013 7.79494 8.14756 8.83229 9.43760 10.94653 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.014517 B = 0.004693 C = 0.003575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1928.296350 B = 5964.749232 C = 7830.530255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.061 3.939 3 Si 0.898 3.102 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.528 4.528 8 H 0.060 0.940 9 C 0.013 3.987 10 C 0.111 3.889 11 N -0.703 5.703 12 C 0.279 3.721 13 C -0.131 4.131 14 C -0.035 4.035 15 C 0.527 3.473 16 O -0.496 6.496 17 O -0.508 6.508 18 C -0.140 4.140 19 C -0.022 4.022 20 C -0.109 4.109 21 N 0.036 4.964 22 O -0.158 6.158 23 O -0.169 6.169 24 H 0.264 0.736 25 H 0.029 0.971 26 H 0.024 0.976 27 H 0.062 0.938 28 H 0.065 0.935 29 H 0.413 0.587 30 H 0.162 0.838 31 H 0.418 0.582 32 H 0.153 0.847 33 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.286 -18.806 0.279 20.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.141 4.141 3 Si 0.726 3.274 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.566 4.566 8 H 0.078 0.922 9 C -0.024 4.024 10 C -0.011 4.011 11 N -0.328 5.328 12 C 0.162 3.838 13 C -0.154 4.154 14 C -0.037 4.037 15 C 0.369 3.631 16 O -0.384 6.384 17 O -0.320 6.320 18 C -0.161 4.161 19 C -0.041 4.041 20 C -0.200 4.200 21 N 0.553 4.447 22 O -0.375 6.375 23 O -0.379 6.379 24 H 0.074 0.926 25 H 0.047 0.953 26 H 0.043 0.957 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.253 0.747 30 H 0.179 0.821 31 H 0.277 0.723 32 H 0.171 0.829 33 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 9.618 -18.101 0.319 20.500 hybrid contribution 0.257 0.973 0.022 1.007 sum 9.875 -17.128 0.341 19.774 Atomic orbital electron populations 1.69955 1.06125 1.27125 1.49505 1.24996 0.94890 0.99484 0.94752 0.86493 0.79763 0.82912 0.78273 1.20461 1.21069 1.19727 1.20950 0.93106 0.90128 1.52441 0.92179 1.19313 0.94077 0.90551 0.98506 1.22129 0.96907 0.81336 1.00733 1.46077 1.10492 1.03161 1.73023 1.17410 0.91310 0.85229 0.89860 1.20855 0.90788 0.99171 1.04553 1.19018 0.89474 0.94276 1.00955 1.20714 0.88405 0.81146 0.72806 1.90956 1.69549 1.33411 1.44509 1.84537 1.27683 1.34625 1.85188 1.20982 0.92386 0.98067 1.04676 1.20579 0.94219 0.95679 0.93666 1.20666 0.79367 0.95759 1.24169 1.43475 1.03334 0.99727 0.98136 1.94512 1.64122 1.31724 1.47183 1.94553 1.73931 1.30876 1.38585 0.92627 0.95311 0.95748 0.91975 0.91724 0.74659 0.82071 0.72324 0.82940 0.83186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.83 13.29 55.43 0.74 -25.09 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 3 Si 0.90 20.94 29.54 -169.99 -5.02 15.92 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.53 -14.11 9.11 -34.44 -0.31 -14.43 16 8 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 9 C 0.01 0.31 5.09 -27.88 -0.14 0.17 16 10 C 0.11 2.10 4.89 -4.04 -0.02 2.08 16 11 N -0.70 -12.08 5.50 -58.67 -0.32 -12.40 16 12 C 0.28 4.14 6.60 -83.83 -0.55 3.58 16 13 C -0.13 -1.74 8.86 -38.95 -0.35 -2.08 16 14 C -0.03 -0.38 5.87 -105.00 -0.62 -1.00 16 15 C 0.53 5.52 8.27 34.62 0.29 5.80 16 16 O -0.50 -6.81 17.13 -19.24 -0.33 -7.14 16 17 O -0.51 -3.39 12.68 -40.49 -0.51 -3.91 16 18 C -0.14 -1.28 9.61 -39.15 -0.38 -1.66 16 19 C -0.02 -0.23 9.64 -39.68 -0.38 -0.61 16 20 C -0.11 -1.53 6.52 -79.66 -0.52 -2.04 16 21 N 0.04 0.58 4.29 34.10 0.15 0.72 16 22 O -0.16 -2.50 18.93 -29.46 -0.56 -3.06 16 23 O -0.17 -2.99 16.72 -29.46 -0.49 -3.49 16 24 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 25 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.02 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.06 1.13 7.72 -51.93 -0.40 0.73 16 28 H 0.06 1.19 8.13 -51.93 -0.42 0.77 16 29 H 0.41 7.47 6.06 -40.82 -0.25 7.22 16 30 H 0.16 2.24 6.32 -52.48 -0.33 1.91 16 31 H 0.42 0.94 9.11 45.56 0.42 1.35 16 32 H 0.15 0.99 7.60 -52.49 -0.40 0.59 16 33 H 0.15 1.23 8.00 -52.49 -0.42 0.81 16 LS Contribution 304.59 15.07 4.59 4.59 Total: -1.00 -31.48 304.59 -7.04 -38.52 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -2.19 Total: 3.92 kcal Atomic # 6 Polarization: -5.51 SS G_CDS: -3.08 Total: -8.59 kcal Atomic # 7 Polarization: -37.33 SS G_CDS: 0.56 Total: -36.77 kcal Atomic # 8 Polarization: -15.69 SS G_CDS: -1.89 Total: -17.58 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -31.48 -7.04 -38.52 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833759952.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.024 kcal (2) G-P(sol) polarization free energy of solvation -31.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds