Wall clock time and date at job start Tue Mar 31 2020 01:05:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86806 * 119.99797 * 2 1 4 4 H 1.48503 * 109.46803 * 270.00290 * 3 2 1 5 5 H 1.48500 * 109.47115 * 29.99791 * 3 2 1 6 6 H 1.48501 * 109.47204 * 150.00360 * 3 2 1 7 7 C 1.37871 * 120.00557 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00297 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99920 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47547 * 179.97438 * 9 7 2 11 11 N 1.46503 * 109.47391 * 180.02562 * 10 9 7 12 12 C 1.39710 * 119.99812 * 180.02562 * 11 10 9 13 13 C 1.38661 * 120.00479 * 5.89749 * 12 11 10 14 14 C 1.39510 * 119.76898 * 179.79660 * 13 12 11 15 15 C 1.47748 * 120.11393 * 180.23392 * 14 13 12 16 16 O 1.21469 * 120.00033 * 0.27150 * 15 14 13 17 17 O 1.34701 * 119.99590 * 180.27401 * 15 14 13 18 18 C 1.39665 * 119.76661 * 0.50507 * 14 13 12 19 19 C 1.37960 * 120.00306 * 359.72696 * 18 14 13 20 20 C 1.38259 * 120.23418 * 0.02562 * 19 18 14 21 21 N 1.48023 * 119.88452 * 179.97438 * 20 19 18 22 22 O 1.21794 * 119.99872 * 37.38745 * 21 20 19 23 23 O 1.21796 * 120.00014 * 217.38739 * 21 20 19 24 24 H 0.96996 * 120.00333 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.47665 * 59.99335 * 9 7 2 26 26 H 1.08999 * 109.47087 * 300.00057 * 9 7 2 27 27 H 1.08992 * 109.47329 * 59.99749 * 10 9 7 28 28 H 1.09004 * 109.46839 * 299.99782 * 10 9 7 29 29 H 0.97001 * 119.99832 * 359.97438 * 11 10 9 30 30 H 1.08007 * 120.11590 * 0.02633 * 13 12 11 31 31 H 0.96709 * 116.99711 * 179.97438 * 17 15 14 32 32 H 1.08000 * 119.99550 * 179.70635 * 18 14 13 33 33 H 1.08000 * 119.88276 * 180.02562 * 19 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0005 11 7 1.5130 -4.9308 -0.0001 12 6 2.2117 -6.1407 0.0003 13 6 3.5927 -6.1438 0.1247 14 6 4.2850 -7.3550 0.1288 15 6 5.7561 -7.3675 0.2661 16 8 6.3643 -6.3224 0.3806 17 8 6.4226 -8.5381 0.2643 18 6 3.5832 -8.5553 -0.0030 19 6 2.2096 -8.5408 -0.1310 20 6 1.5230 -7.3408 -0.1299 21 7 0.0492 -7.3343 -0.2683 22 8 -0.6164 -8.2033 0.2656 23 8 -0.4977 -6.4599 -0.9162 24 1 -0.4850 0.8400 0.0004 25 1 0.6248 -2.5571 -0.8896 26 1 0.6242 -2.5567 0.8903 27 1 2.8721 -3.6043 0.8904 28 1 2.8721 -3.6042 -0.8895 29 1 0.5430 -4.9308 0.0000 30 1 4.1302 -5.2121 0.2218 31 1 7.3844 -8.4957 0.3564 32 1 4.1159 -9.4948 -0.0051 33 1 1.6688 -9.4702 -0.2324 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833759952.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:05:46 Heat of formation + Delta-G solvation = -93.336705 kcal Electronic energy + Delta-G solvation = -20987.826928 eV Core-core repulsion = 17401.757624 eV Total energy + Delta-G solvation = -3586.069303 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.094 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.35690 -41.62716 -40.28910 -37.92312 -37.29944 -37.18206 -35.21637 -33.41413 -32.42769 -30.05655 -28.26557 -26.81912 -24.96338 -23.92623 -22.84643 -22.23675 -20.36136 -19.85202 -19.44049 -18.96047 -18.59948 -18.36048 -17.19260 -16.80491 -16.48403 -16.46075 -16.11316 -15.61294 -15.35783 -14.89601 -14.46459 -14.30689 -14.13828 -13.40650 -13.07428 -12.78880 -12.73225 -12.66868 -12.54109 -12.50401 -12.34573 -12.28025 -11.89545 -11.68128 -11.44971 -11.42806 -10.79036 -10.62832 -8.97450 -8.27577 -6.40334 -1.35825 -0.24563 0.07404 0.33668 1.23690 1.40076 1.41122 1.52296 1.71754 2.08296 2.32126 2.40026 3.07498 3.17171 3.64802 3.68498 3.83286 3.90545 4.20039 4.34006 4.39939 4.59395 4.71583 4.71923 4.94378 5.09798 5.21334 5.35559 5.45152 5.47760 5.61954 5.81285 6.03613 6.22900 6.42607 6.74759 6.86791 7.30231 8.84860 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.014517 B = 0.004693 C = 0.003575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1928.296350 B = 5964.749232 C = 7830.530255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.004 3.996 3 Si 0.970 3.030 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.261 1.261 7 C -0.544 4.544 8 H 0.070 0.930 9 C 0.019 3.981 10 C 0.135 3.865 11 N -0.722 5.722 12 C 0.260 3.740 13 C -0.144 4.144 14 C -0.031 4.031 15 C 0.537 3.463 16 O -0.534 6.534 17 O -0.489 6.489 18 C -0.105 4.105 19 C -0.014 4.014 20 C -0.115 4.115 21 N 0.037 4.963 22 O -0.132 6.132 23 O -0.228 6.228 24 H 0.266 0.734 25 H 0.000 1.000 26 H -0.002 1.002 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.405 0.595 30 H 0.150 0.850 31 H 0.440 0.560 32 H 0.196 0.804 33 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.814 -21.368 0.543 24.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.195 4.195 3 Si 0.794 3.206 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.185 1.185 7 C -0.582 4.582 8 H 0.088 0.912 9 C -0.019 4.019 10 C 0.012 3.988 11 N -0.349 5.349 12 C 0.147 3.853 13 C -0.167 4.167 14 C -0.034 4.034 15 C 0.381 3.619 16 O -0.425 6.425 17 O -0.303 6.303 18 C -0.126 4.126 19 C -0.033 4.033 20 C -0.205 4.205 21 N 0.551 4.449 22 O -0.360 6.360 23 O -0.425 6.425 24 H 0.074 0.926 25 H 0.019 0.981 26 H 0.017 0.983 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.244 0.756 30 H 0.168 0.832 31 H 0.303 0.697 32 H 0.213 0.787 33 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 12.192 -20.642 0.514 23.979 hybrid contribution -0.436 1.439 0.003 1.503 sum 11.756 -19.203 0.517 22.522 Atomic orbital electron populations 1.70097 1.07928 1.28115 1.50817 1.25971 0.95726 1.03513 0.94293 0.85373 0.78638 0.78039 0.78559 1.19722 1.20843 1.18466 1.21428 0.93818 0.91263 1.51740 0.91219 1.19121 0.94439 0.92480 0.95827 1.21606 0.95239 0.80774 1.01162 1.45753 1.09919 1.03411 1.75780 1.17543 0.91857 0.84558 0.91339 1.20795 0.90096 1.00049 1.05754 1.19199 0.90290 0.94097 0.99804 1.20498 0.88033 0.81446 0.71906 1.90962 1.70164 1.35024 1.46365 1.84472 1.29642 1.32138 1.84094 1.21454 0.91635 0.98759 1.00775 1.21051 0.94791 0.95311 0.92102 1.20985 0.77960 0.96801 1.24761 1.43784 1.04289 0.99239 0.97602 1.94464 1.64885 1.30964 1.45676 1.94578 1.74796 1.32148 1.40964 0.92552 0.98144 0.98333 0.91375 0.91407 0.75615 0.83235 0.69673 0.78696 0.79996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.02 13.29 21.44 0.28 -55.73 16 2 C 0.00 0.21 5.46 84.65 0.46 0.67 16 3 Si 0.97 43.43 29.54 68.60 2.03 45.46 16 4 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 5 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 6 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 7 C -0.54 -29.97 9.11 25.60 0.23 -29.73 16 8 H 0.07 3.61 7.74 -2.91 -0.02 3.59 16 9 C 0.02 0.97 5.09 29.85 0.15 1.12 16 10 C 0.13 5.39 4.89 86.38 0.42 5.81 16 11 N -0.72 -26.23 5.50 -339.53 -1.87 -28.10 16 12 C 0.26 7.75 6.60 38.17 0.25 8.00 16 13 C -0.14 -3.73 8.86 22.68 0.20 -3.53 16 14 C -0.03 -0.60 5.87 -20.11 -0.12 -0.72 16 15 C 0.54 9.57 8.27 70.34 0.58 10.15 16 16 O -0.53 -13.77 17.13 19.94 0.34 -13.42 16 17 O -0.49 -4.21 12.68 -56.11 -0.71 -4.92 16 18 C -0.11 -1.41 9.61 22.55 0.22 -1.20 16 19 C -0.01 -0.23 9.64 22.21 0.21 -0.02 16 20 C -0.12 -3.07 6.52 36.56 0.24 -2.84 16 21 N 0.04 1.17 4.29 -46.02 -0.20 0.98 16 22 O -0.13 -4.01 18.93 18.89 0.36 -3.65 16 23 O -0.23 -8.51 16.72 18.89 0.32 -8.19 16 24 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 25 H 0.00 0.01 8.14 -2.38 -0.02 -0.01 16 26 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 27 H 0.07 2.59 7.72 -2.39 -0.02 2.57 16 28 H 0.07 2.61 8.13 -2.38 -0.02 2.59 16 29 H 0.41 15.90 6.06 -92.71 -0.56 15.34 16 30 H 0.15 4.22 6.32 -2.91 -0.02 4.20 16 31 H 0.44 -0.01 9.11 -74.05 -0.67 -0.69 16 32 H 0.20 1.10 7.60 -2.91 -0.02 1.08 16 33 H 0.18 2.01 8.00 -2.91 -0.02 1.99 16 Total: -1.00 -71.63 304.59 3.36 -68.27 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -0.05 Total: 11.59 kcal Atomic # 6 Polarization: -15.13 SS G_CDS: 2.86 Total: -12.27 kcal Atomic # 7 Polarization: -81.07 SS G_CDS: -1.78 Total: -82.85 kcal Atomic # 8 Polarization: -30.50 SS G_CDS: 0.30 Total: -30.20 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -71.63 3.36 -68.27 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833759952.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.063 kcal (2) G-P(sol) polarization free energy of solvation -71.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds