Wall clock time and date at job start Tue Mar 31 2020 01:04:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00335 * 2 1 4 4 H 1.48496 * 109.47451 * 240.00148 * 3 2 1 5 5 H 1.48504 * 109.47045 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47059 * 119.99947 * 3 2 1 7 7 C 1.37878 * 119.99376 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99445 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00431 * 359.97438 * 7 2 1 10 10 S 1.81399 * 109.47352 * 180.02562 * 9 7 2 11 11 C 1.81395 * 103.00377 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.47350 * 179.97438 * 11 10 9 13 13 O 1.45201 * 109.47068 * 180.02562 * 12 11 10 14 14 C 1.34226 * 117.00043 * 180.02562 * 13 12 11 15 15 O 1.20827 * 119.99880 * 359.97438 * 14 13 12 16 16 C 1.50698 * 120.00072 * 179.97438 * 14 13 12 17 17 C 1.50707 * 109.47247 * 179.97438 * 16 14 13 18 18 C 1.38238 * 119.99792 * 89.99994 * 17 16 14 19 19 C 1.38235 * 119.99712 * 179.97438 * 18 17 16 20 20 C 1.38234 * 120.00220 * 359.97124 * 19 18 17 21 21 C 1.38233 * 120.00037 * 0.28719 * 20 19 18 22 22 C 1.38234 * 120.00179 * 269.97930 * 17 16 14 23 23 H 0.97003 * 119.99794 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.47207 * 60.00559 * 9 7 2 25 25 H 1.09005 * 109.47272 * 300.00404 * 9 7 2 26 26 H 1.09003 * 109.47081 * 59.99680 * 11 10 9 27 27 H 1.09000 * 109.47357 * 300.00229 * 11 10 9 28 28 H 1.08998 * 109.47287 * 60.00358 * 12 11 10 29 29 H 1.09004 * 109.47143 * 299.99710 * 12 11 10 30 30 H 1.09005 * 109.47656 * 59.99919 * 16 14 13 31 31 H 1.09000 * 109.47265 * 299.99227 * 16 14 13 32 32 H 1.08005 * 120.00068 * 359.97438 * 18 17 16 33 33 H 1.07999 * 119.99770 * 179.97438 * 19 18 17 34 34 H 1.08002 * 119.99744 * 180.02562 * 20 19 18 35 35 H 1.07998 * 120.00395 * 179.72811 * 21 20 19 36 36 H 1.07999 * 119.99968 * 359.97438 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 16 2.4296 -3.8780 -0.0005 11 6 1.3513 -5.3367 -0.0013 12 6 2.2081 -6.6043 -0.0020 13 8 1.3449 -7.7719 -0.0033 14 6 1.9443 -8.9729 -0.0035 15 8 3.1504 -9.0461 -0.0032 16 6 1.1131 -10.2299 -0.0042 17 6 2.0212 -11.4326 -0.0050 18 6 2.4378 -11.9849 1.1919 19 6 3.2703 -13.0885 1.1912 20 6 3.6858 -13.6401 -0.0063 21 6 3.2736 -13.0846 -1.2031 22 6 2.4373 -11.9838 -1.2024 23 1 -0.4850 0.8401 0.0004 24 1 0.6239 -2.5567 -0.8904 25 1 0.6245 -2.5571 0.8897 26 1 0.7224 -5.3231 -0.8915 27 1 0.7218 -5.3237 0.8884 28 1 2.8372 -6.6181 0.8879 29 1 2.8372 -6.6171 -0.8921 30 1 0.4843 -10.2493 -0.8944 31 1 0.4840 -10.2499 0.8856 32 1 2.1128 -11.5542 2.1275 33 1 3.5961 -13.5197 2.1262 34 1 4.3359 -14.5025 -0.0068 35 1 3.6017 -13.5128 -2.1387 36 1 2.1113 -11.5528 -2.1375 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000840214516.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:04:33 Heat of formation + Delta-G solvation = -78.198821 kcal Electronic energy + Delta-G solvation = -17787.068890 eV Core-core repulsion = 14747.949229 eV Total energy + Delta-G solvation = -3039.119661 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.092 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.66615 -39.27931 -36.64945 -33.34027 -33.18738 -31.55630 -31.17848 -28.59440 -28.19813 -23.93545 -22.88496 -22.88194 -21.99019 -20.71751 -17.83781 -17.18243 -16.79286 -16.54487 -16.21818 -15.44846 -15.42985 -15.23801 -14.45912 -14.37221 -13.69454 -13.63302 -13.44177 -12.80358 -12.74785 -12.57515 -12.30449 -12.29351 -11.79586 -11.79100 -11.45500 -11.30257 -10.87782 -10.81238 -10.58099 -10.48852 -10.04877 -9.63846 -9.18415 -9.06291 -8.96543 -8.64274 -6.80260 -6.22763 -4.27467 0.97896 1.13925 2.09949 2.12605 3.01367 3.26951 3.29980 3.34375 3.59194 3.75515 4.24961 4.33066 4.49433 4.71474 4.78706 4.83037 4.90354 5.02151 5.04236 5.11828 5.14430 5.22039 5.34248 5.51540 5.67780 5.74591 5.83660 5.96309 6.15587 6.22764 6.25997 6.45684 6.70794 7.03695 7.05568 7.68574 7.71424 7.95929 8.73945 9.35753 10.88454 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.062857 B = 0.002256 C = 0.002233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 445.351859 B =12409.586844 C =12534.543360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.066 3.934 3 Si 0.909 3.091 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.515 4.515 8 H 0.068 0.932 9 C 0.095 3.905 10 S -0.292 6.292 11 C -0.097 4.097 12 C 0.090 3.910 13 O -0.358 6.358 14 C 0.460 3.540 15 O -0.499 6.499 16 C -0.074 4.074 17 C -0.077 4.077 18 C -0.103 4.103 19 C -0.120 4.120 20 C -0.118 4.118 21 C -0.120 4.120 22 C -0.103 4.103 23 H 0.267 0.733 24 H 0.038 0.962 25 H 0.038 0.962 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.115 0.885 31 H 0.115 0.885 32 H 0.122 0.878 33 H 0.123 0.877 34 H 0.121 0.879 35 H 0.123 0.877 36 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.103 -25.953 -0.012 25.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.139 4.139 3 Si 0.736 3.264 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.554 4.554 8 H 0.086 0.914 9 C -0.052 4.052 10 S -0.066 6.066 11 C -0.245 4.245 12 C 0.016 3.984 13 O -0.275 6.275 14 C 0.302 3.698 15 O -0.386 6.386 16 C -0.112 4.112 17 C -0.077 4.077 18 C -0.121 4.121 19 C -0.138 4.138 20 C -0.136 4.136 21 C -0.138 4.138 22 C -0.121 4.121 23 H 0.076 0.924 24 H 0.056 0.944 25 H 0.056 0.944 26 H 0.103 0.897 27 H 0.103 0.897 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.134 0.866 31 H 0.134 0.866 32 H 0.140 0.860 33 H 0.141 0.859 34 H 0.139 0.861 35 H 0.141 0.859 36 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 2.406 -25.782 -0.012 25.894 hybrid contribution -0.838 0.959 0.000 1.274 sum 1.568 -24.822 -0.012 24.872 Atomic orbital electron populations 1.69944 1.06144 1.27546 1.49392 1.24967 0.95010 0.99310 0.94565 0.86375 0.79371 0.81686 0.79007 1.19860 1.21032 1.19865 1.20621 0.93499 0.88618 1.52677 0.91422 1.21087 0.93472 0.90249 1.00352 1.86647 1.20539 1.01271 1.98133 1.23144 1.01158 0.94494 1.05687 1.22780 0.91527 0.80448 1.03634 1.86460 1.42359 1.14945 1.83724 1.23498 0.88019 0.85211 0.73066 1.90706 1.15756 1.87659 1.44483 1.20320 0.97036 0.86938 1.06879 1.19294 0.98853 0.95613 0.93932 1.21032 0.97553 0.96109 0.97363 1.21123 0.97972 0.96466 0.98226 1.21185 0.99768 1.00004 0.92643 1.21123 0.97946 0.96477 0.98234 1.21030 0.97527 0.96149 0.97355 0.92372 0.94360 0.94366 0.89739 0.89734 0.90338 0.90345 0.86649 0.86646 0.85988 0.85922 0.86064 0.85920 0.85989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.76 13.29 55.43 0.74 -25.03 16 2 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 3 Si 0.91 21.28 29.54 -169.99 -5.02 16.25 16 4 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.51 -14.45 9.13 -34.44 -0.31 -14.77 16 8 H 0.07 1.90 7.71 -52.48 -0.40 1.49 16 9 C 0.10 2.45 5.70 36.00 0.21 2.66 16 10 S -0.29 -6.32 21.66 -107.50 -2.33 -8.65 16 11 C -0.10 -1.65 6.32 37.16 0.23 -1.41 16 12 C 0.09 1.39 5.47 37.16 0.20 1.59 16 13 O -0.36 -4.92 10.22 -39.25 -0.40 -5.32 16 14 C 0.46 5.86 7.95 36.00 0.29 6.14 16 15 O -0.50 -7.97 15.78 -18.75 -0.30 -8.26 16 16 C -0.07 -0.63 5.94 -29.03 -0.17 -0.80 16 17 C -0.08 -0.73 4.37 -104.62 -0.46 -1.19 16 18 C -0.10 -0.94 9.70 -39.58 -0.38 -1.32 16 19 C -0.12 -1.01 10.05 -39.58 -0.40 -1.40 16 20 C -0.12 -0.95 10.05 -39.58 -0.40 -1.35 16 21 C -0.12 -1.01 10.05 -39.58 -0.40 -1.40 16 22 C -0.10 -0.94 9.70 -39.58 -0.38 -1.33 16 23 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 24 H 0.04 1.02 8.14 -51.92 -0.42 0.60 16 25 H 0.04 1.02 8.14 -51.92 -0.42 0.60 16 26 H 0.08 1.39 8.14 -51.92 -0.42 0.97 16 27 H 0.08 1.39 8.14 -51.92 -0.42 0.97 16 28 H 0.08 1.22 8.13 -51.93 -0.42 0.80 16 29 H 0.08 1.22 8.13 -51.93 -0.42 0.80 16 30 H 0.12 0.73 8.09 -51.93 -0.42 0.31 16 31 H 0.12 0.73 8.09 -51.93 -0.42 0.31 16 32 H 0.12 0.94 8.06 -52.48 -0.42 0.51 16 33 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 34 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 35 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 36 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 LS Contribution 333.01 15.07 5.02 5.02 Total: -1.00 -31.64 333.01 -9.39 -41.04 By element: Atomic # 1 Polarization: 2.84 SS G_CDS: -5.03 Total: -2.19 kcal Atomic # 6 Polarization: -10.78 SS G_CDS: -2.07 Total: -12.86 kcal Atomic # 7 Polarization: -25.76 SS G_CDS: 0.74 Total: -25.03 kcal Atomic # 8 Polarization: -12.89 SS G_CDS: -0.70 Total: -13.59 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: -6.32 SS G_CDS: -2.33 Total: -8.65 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.64 -9.39 -41.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840214516.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.160 kcal (2) G-P(sol) polarization free energy of solvation -31.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds