Wall clock time and date at job start Tue Mar 31 2020 01:04:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00335 * 2 1 4 4 H 1.48496 * 109.47451 * 240.00148 * 3 2 1 5 5 H 1.48504 * 109.47045 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47059 * 119.99947 * 3 2 1 7 7 C 1.37878 * 119.99376 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99445 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00431 * 359.97438 * 7 2 1 10 10 S 1.81399 * 109.47352 * 180.02562 * 9 7 2 11 11 C 1.81395 * 103.00377 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.47350 * 179.97438 * 11 10 9 13 13 O 1.45201 * 109.47068 * 180.02562 * 12 11 10 14 14 C 1.34226 * 117.00043 * 180.02562 * 13 12 11 15 15 O 1.20827 * 119.99880 * 359.97438 * 14 13 12 16 16 C 1.50698 * 120.00072 * 179.97438 * 14 13 12 17 17 C 1.50707 * 109.47247 * 179.97438 * 16 14 13 18 18 C 1.38238 * 119.99792 * 89.99994 * 17 16 14 19 19 C 1.38235 * 119.99712 * 179.97438 * 18 17 16 20 20 C 1.38234 * 120.00220 * 359.97124 * 19 18 17 21 21 C 1.38233 * 120.00037 * 0.28719 * 20 19 18 22 22 C 1.38234 * 120.00179 * 269.97930 * 17 16 14 23 23 H 0.97003 * 119.99794 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.47207 * 60.00559 * 9 7 2 25 25 H 1.09005 * 109.47272 * 300.00404 * 9 7 2 26 26 H 1.09003 * 109.47081 * 59.99680 * 11 10 9 27 27 H 1.09000 * 109.47357 * 300.00229 * 11 10 9 28 28 H 1.08998 * 109.47287 * 60.00358 * 12 11 10 29 29 H 1.09004 * 109.47143 * 299.99710 * 12 11 10 30 30 H 1.09005 * 109.47656 * 59.99919 * 16 14 13 31 31 H 1.09000 * 109.47265 * 299.99227 * 16 14 13 32 32 H 1.08005 * 120.00068 * 359.97438 * 18 17 16 33 33 H 1.07999 * 119.99770 * 179.97438 * 19 18 17 34 34 H 1.08002 * 119.99744 * 180.02562 * 20 19 18 35 35 H 1.07998 * 120.00395 * 179.72811 * 21 20 19 36 36 H 1.07999 * 119.99968 * 359.97438 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 16 2.4296 -3.8780 -0.0005 11 6 1.3513 -5.3367 -0.0013 12 6 2.2081 -6.6043 -0.0020 13 8 1.3449 -7.7719 -0.0033 14 6 1.9443 -8.9729 -0.0035 15 8 3.1504 -9.0461 -0.0032 16 6 1.1131 -10.2299 -0.0042 17 6 2.0212 -11.4326 -0.0050 18 6 2.4378 -11.9849 1.1919 19 6 3.2703 -13.0885 1.1912 20 6 3.6858 -13.6401 -0.0063 21 6 3.2736 -13.0846 -1.2031 22 6 2.4373 -11.9838 -1.2024 23 1 -0.4850 0.8401 0.0004 24 1 0.6239 -2.5567 -0.8904 25 1 0.6245 -2.5571 0.8897 26 1 0.7224 -5.3231 -0.8915 27 1 0.7218 -5.3237 0.8884 28 1 2.8372 -6.6181 0.8879 29 1 2.8372 -6.6171 -0.8921 30 1 0.4843 -10.2493 -0.8944 31 1 0.4840 -10.2499 0.8856 32 1 2.1128 -11.5542 2.1275 33 1 3.5961 -13.5197 2.1262 34 1 4.3359 -14.5025 -0.0068 35 1 3.6017 -13.5128 -2.1387 36 1 2.1113 -11.5528 -2.1375 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000840214516.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:04:32 Heat of formation + Delta-G solvation = -93.790365 kcal Electronic energy + Delta-G solvation = -17787.744990 eV Core-core repulsion = 14747.949229 eV Total energy + Delta-G solvation = -3039.795761 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.092 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.67980 -39.97113 -37.76369 -35.31231 -34.07172 -32.82482 -31.78562 -30.70662 -28.94124 -25.60680 -24.41453 -23.50067 -23.00271 -21.57695 -18.90696 -18.64543 -17.88790 -17.87593 -17.22777 -17.08120 -16.32946 -16.24775 -15.97751 -15.51368 -14.82878 -14.58112 -14.43474 -14.27232 -14.16942 -14.00368 -13.47877 -13.43811 -13.07045 -12.96912 -12.71653 -12.60072 -12.09932 -12.04864 -11.89005 -11.72444 -11.71784 -11.51788 -10.81048 -10.75181 -9.81329 -9.70845 -8.58718 -8.34751 -6.48181 0.28544 0.50961 0.64786 1.13081 1.40815 1.43749 1.52290 1.86501 1.93917 2.36544 2.90970 3.00153 3.54434 3.64765 3.71842 3.89262 3.91615 4.14647 4.25276 4.28300 4.33178 4.49939 4.54383 4.63128 4.64518 4.75660 4.91658 4.91948 5.07212 5.15023 5.37678 5.54575 5.55383 5.61418 5.62185 5.85457 6.10889 6.58580 6.65242 7.19913 8.76986 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.062857 B = 0.002256 C = 0.002233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 445.351859 B =12409.586844 C =12534.543360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.015 3.985 3 Si 0.977 3.023 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.267 1.267 7 C -0.540 4.540 8 H 0.063 0.937 9 C 0.097 3.903 10 S -0.298 6.298 11 C -0.082 4.082 12 C 0.099 3.901 13 O -0.355 6.355 14 C 0.461 3.539 15 O -0.535 6.535 16 C -0.066 4.066 17 C -0.094 4.094 18 C -0.119 4.119 19 C -0.131 4.131 20 C -0.126 4.126 21 C -0.131 4.131 22 C -0.119 4.119 23 H 0.271 0.729 24 H 0.020 0.980 25 H 0.020 0.980 26 H 0.093 0.907 27 H 0.093 0.907 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.141 0.859 31 H 0.141 0.859 32 H 0.132 0.868 33 H 0.140 0.860 34 H 0.142 0.858 35 H 0.140 0.860 36 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.283 -26.868 -0.013 26.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.186 4.186 3 Si 0.800 3.200 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.191 1.191 7 C -0.579 4.579 8 H 0.081 0.919 9 C -0.050 4.050 10 S -0.072 6.072 11 C -0.230 4.230 12 C 0.024 3.976 13 O -0.272 6.272 14 C 0.305 3.695 15 O -0.424 6.424 16 C -0.103 4.103 17 C -0.094 4.094 18 C -0.137 4.137 19 C -0.149 4.149 20 C -0.143 4.143 21 C -0.149 4.149 22 C -0.137 4.137 23 H 0.080 0.920 24 H 0.038 0.962 25 H 0.038 0.962 26 H 0.111 0.889 27 H 0.111 0.889 28 H 0.094 0.906 29 H 0.093 0.907 30 H 0.159 0.841 31 H 0.159 0.841 32 H 0.150 0.850 33 H 0.158 0.842 34 H 0.160 0.840 35 H 0.158 0.842 36 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 2.579 -26.714 -0.013 26.838 hybrid contribution -0.900 1.072 0.000 1.400 sum 1.679 -25.642 -0.012 25.697 Atomic orbital electron populations 1.70043 1.07620 1.28736 1.49768 1.25908 0.95924 1.03018 0.93725 0.85311 0.78192 0.77130 0.79317 1.19132 1.20060 1.19142 1.20946 0.93517 0.90110 1.53296 0.91892 1.20780 0.93838 0.91921 0.98507 1.86463 1.20576 1.02038 1.98139 1.23095 1.00453 0.92868 1.06587 1.22475 0.91161 0.80601 1.03390 1.86469 1.41891 1.14948 1.83885 1.24396 0.88064 0.85528 0.71480 1.90696 1.17512 1.87892 1.46265 1.20471 0.96568 0.83984 1.09265 1.19492 0.99577 0.96129 0.94245 1.21309 0.97925 0.96616 0.97833 1.21442 0.97781 0.96402 0.99267 1.21524 0.99765 1.00555 0.92488 1.21443 0.97760 0.96415 0.99276 1.21307 0.97897 0.96653 0.97824 0.91975 0.96160 0.96167 0.88866 0.88859 0.90647 0.90655 0.84138 0.84134 0.85031 0.84196 0.84026 0.84197 0.85030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.75 13.29 21.45 0.28 -53.46 16 2 C 0.02 0.86 5.46 84.66 0.46 1.32 16 3 Si 0.98 43.38 29.54 68.60 2.03 45.41 16 4 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 5 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 6 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 7 C -0.54 -30.71 9.13 25.60 0.23 -30.47 16 8 H 0.06 3.56 7.71 -2.91 -0.02 3.54 16 9 C 0.10 5.11 5.70 71.23 0.41 5.51 16 10 S -0.30 -12.94 21.66 -56.49 -1.22 -14.16 16 11 C -0.08 -2.72 6.32 71.98 0.45 -2.26 16 12 C 0.10 2.93 5.47 71.98 0.39 3.32 16 13 O -0.35 -9.18 10.22 -51.38 -0.53 -9.70 16 14 C 0.46 11.07 7.95 71.24 0.57 11.64 16 15 O -0.53 -16.73 15.78 21.96 0.35 -16.38 16 16 C -0.07 -0.97 5.94 29.10 0.17 -0.80 16 17 C -0.09 -1.67 4.37 -19.86 -0.09 -1.75 16 18 C -0.12 -2.04 9.70 22.27 0.22 -1.82 16 19 C -0.13 -2.03 10.05 22.27 0.22 -1.81 16 20 C -0.13 -1.84 10.05 22.27 0.22 -1.62 16 21 C -0.13 -2.03 10.05 22.27 0.22 -1.81 16 22 C -0.12 -2.04 9.70 22.27 0.22 -1.82 16 23 H 0.27 14.74 8.31 -92.71 -0.77 13.97 16 24 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 25 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.09 2.97 8.14 -2.39 -0.02 2.95 16 27 H 0.09 2.97 8.14 -2.39 -0.02 2.95 16 28 H 0.08 2.29 8.13 -2.39 -0.02 2.27 16 29 H 0.08 2.29 8.13 -2.38 -0.02 2.27 16 30 H 0.14 1.37 8.09 -2.38 -0.02 1.36 16 31 H 0.14 1.38 8.09 -2.39 -0.02 1.36 16 32 H 0.13 1.85 8.06 -2.91 -0.02 1.83 16 33 H 0.14 1.54 8.06 -2.91 -0.02 1.52 16 34 H 0.14 1.38 8.06 -2.91 -0.02 1.36 16 35 H 0.14 1.54 8.06 -2.91 -0.02 1.52 16 36 H 0.13 1.85 8.06 -2.91 -0.02 1.83 16 Total: -1.00 -68.01 333.01 5.67 -62.34 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: 1.06 Total: 8.33 kcal Atomic # 6 Polarization: -26.07 SS G_CDS: 3.71 Total: -22.37 kcal Atomic # 7 Polarization: -53.75 SS G_CDS: 0.28 Total: -53.46 kcal Atomic # 8 Polarization: -25.90 SS G_CDS: -0.18 Total: -26.08 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Atomic # 16 Polarization: -12.94 SS G_CDS: -1.22 Total: -14.16 kcal Total: -68.01 5.67 -62.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840214516.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.451 kcal (2) G-P(sol) polarization free energy of solvation -68.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds