Wall clock time and date at job start Tue Mar 31 2020 01:51:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47524 * 2 1 4 4 C 1.50697 * 109.47461 * 120.00292 * 2 1 3 5 5 H 1.07998 * 119.99991 * 119.99782 * 4 2 1 6 6 C 1.37882 * 119.99981 * 300.00076 * 4 2 1 7 7 N 1.31514 * 120.00041 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00120 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.47077 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.46998 * 119.99758 * 8 6 4 11 11 H 1.48503 * 109.46872 * 240.00047 * 8 6 4 12 12 N 1.46502 * 109.47051 * 240.00498 * 2 1 3 13 13 C 1.46509 * 119.99539 * 295.08756 * 12 2 1 14 14 S 1.65595 * 120.00370 * 115.08909 * 12 2 1 15 15 O 1.42098 * 106.40492 * 163.06112 * 14 12 2 16 16 O 1.42098 * 106.40019 * 30.14426 * 14 12 2 17 17 O 1.52198 * 107.21809 * 276.60196 * 14 12 2 18 18 C 1.42894 * 114.00455 * 285.82600 * 17 14 12 19 19 H 1.09008 * 110.70318 * 27.02378 * 18 17 14 20 20 C 1.55132 * 110.80375 * 150.57337 * 18 17 14 21 21 N 1.48748 * 101.66593 * 153.59239 * 20 18 17 22 22 O 1.47050 * 105.56430 * 322.76804 * 21 20 18 23 23 C 1.43487 * 108.98814 * 25.03291 * 22 21 20 24 24 H 1.09005 * 109.46505 * 305.69296 * 1 2 3 25 25 H 1.09000 * 109.47131 * 65.68762 * 1 2 3 26 26 H 1.08991 * 109.47003 * 185.69671 * 1 2 3 27 27 H 0.96993 * 120.00173 * 179.97438 * 7 6 4 28 28 H 1.08998 * 109.47029 * 270.00039 * 13 12 2 29 29 H 1.09001 * 109.46916 * 30.00010 * 13 12 2 30 30 H 1.08997 * 109.46763 * 149.99915 * 13 12 2 31 31 H 1.09001 * 110.98766 * 271.69358 * 20 18 17 32 32 H 1.09004 * 110.98451 * 35.49807 * 20 18 17 33 33 H 1.00903 * 110.99943 * 83.12675 * 21 20 18 34 34 H 1.08996 * 110.03280 * 239.22147 * 23 22 21 35 35 H 1.09000 * 110.07426 * 117.81148 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1312 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6035 8 14 2.3215 -1.1205 4.0079 9 1 3.1456 -2.2879 3.6036 10 1 3.1468 -0.1875 4.8164 11 1 1.1662 -1.5869 4.8160 12 7 2.0183 -0.6905 -1.1962 13 6 1.7552 -2.1206 -1.3751 14 16 2.8676 0.1453 -2.3461 15 8 3.5283 -0.8278 -3.1435 16 8 3.5533 1.1849 -1.6618 17 8 1.8508 0.8248 -3.2521 18 6 1.1850 -0.0659 -4.1494 19 1 1.1509 -1.0743 -3.7368 20 6 -0.2415 0.4476 -4.4781 21 7 -0.4769 -0.1552 -5.8175 22 8 0.8187 -0.0955 -6.5103 23 6 1.8694 -0.0627 -5.5337 24 1 -0.3632 0.5996 0.8347 25 1 -0.3633 0.4231 -0.9365 26 1 -0.3633 -1.0225 0.1020 27 1 0.7090 1.1612 3.4845 28 1 2.5675 -2.6976 -0.9330 29 1 0.8164 -2.3813 -0.8864 30 1 1.6860 -2.3470 -2.4391 31 1 -0.9660 0.0798 -3.7515 32 1 -0.2620 1.5362 -4.5308 33 1 -0.7987 -1.1079 -5.7337 34 1 2.4633 0.8432 -5.6544 35 1 2.5048 -0.9421 -5.6381 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000845933207.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:51:18 Heat of formation + Delta-G solvation = -126.006359 kcal Electronic energy + Delta-G solvation = -21693.588571 eV Core-core repulsion = 18241.546557 eV Total energy + Delta-G solvation = -3452.042015 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.097 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.45477 -38.94167 -38.50972 -38.02909 -37.15472 -34.58265 -33.30322 -31.09224 -30.90896 -27.24540 -27.14479 -25.31248 -23.71372 -22.92883 -21.46803 -19.44453 -19.18858 -18.65248 -18.20929 -18.01282 -17.00704 -16.65283 -16.12710 -15.62316 -15.46199 -15.33701 -15.04525 -14.91923 -14.57628 -13.90865 -13.77334 -13.64416 -13.48085 -13.38136 -13.26914 -13.13385 -12.96375 -12.81673 -12.67970 -12.49919 -12.19361 -12.17332 -11.91073 -11.46207 -11.13761 -10.54105 -10.48272 -9.81932 -8.13664 -6.26538 -0.57158 1.28687 1.42335 1.46174 1.55802 1.67629 2.27588 2.44343 2.82672 2.98445 3.13056 3.16308 3.21540 3.39525 3.84862 4.08535 4.15801 4.42054 4.50823 4.60797 4.75325 4.78530 4.95119 5.01027 5.09135 5.17850 5.27803 5.60077 5.64824 5.77502 5.82521 6.08191 6.26166 6.81208 7.42858 8.91792 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.031915 B = 0.005583 C = 0.005274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.122993 B = 5013.923919 C = 5307.542876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.267 3.733 3 H 0.020 0.980 4 C -0.536 4.536 5 H 0.062 0.938 6 C 0.017 3.983 7 N -0.915 5.915 8 Si 0.957 3.043 9 H -0.268 1.268 10 H -0.287 1.287 11 H -0.275 1.275 12 N -0.997 5.997 13 C 0.095 3.905 14 S 2.791 3.209 15 O -1.000 7.000 16 O -0.999 6.999 17 O -0.738 6.738 18 C 0.042 3.958 19 H 0.129 0.871 20 C 0.018 3.982 21 N -0.465 5.465 22 O -0.234 6.234 23 C -0.003 4.003 24 H 0.064 0.936 25 H 0.040 0.960 26 H 0.049 0.951 27 H 0.264 0.736 28 H 0.049 0.951 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.142 0.858 32 H 0.113 0.887 33 H 0.365 0.635 34 H 0.089 0.911 35 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.738 -5.781 -12.768 14.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.163 3.837 3 H 0.038 0.962 4 C -0.575 4.575 5 H 0.080 0.920 6 C -0.183 4.183 7 N -0.554 5.554 8 Si 0.783 3.217 9 H -0.192 1.192 10 H -0.214 1.214 11 H -0.201 1.201 12 N -0.846 5.846 13 C -0.050 4.050 14 S 2.800 3.200 15 O -0.991 6.991 16 O -0.990 6.990 17 O -0.695 6.695 18 C -0.015 4.015 19 H 0.146 0.854 20 C -0.113 4.113 21 N -0.136 5.136 22 O -0.243 6.243 23 C -0.082 4.082 24 H 0.082 0.918 25 H 0.059 0.941 26 H 0.068 0.932 27 H 0.074 0.926 28 H 0.067 0.933 29 H 0.105 0.895 30 H 0.103 0.897 31 H 0.160 0.840 32 H 0.132 0.868 33 H 0.182 0.818 34 H 0.107 0.893 35 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -4.567 -4.583 -13.675 15.128 hybrid contribution 1.002 -0.891 2.181 2.560 sum -3.565 -5.473 -11.493 13.220 Atomic orbital electron populations 1.21937 0.96239 1.01145 1.00192 1.18520 0.92627 0.91199 0.81379 0.96204 1.21625 1.31711 1.13108 0.91065 0.91957 1.25647 0.95202 0.95668 1.01757 1.69991 1.37360 1.23701 1.24377 0.85521 0.78214 0.78553 0.79400 1.19206 1.21354 1.20054 1.57802 1.73138 1.19302 1.34407 1.21547 1.03136 0.78862 1.01433 1.01276 0.73634 0.72290 0.72831 1.93566 1.74294 1.62601 1.68685 1.93588 1.72013 1.59225 1.74222 1.87445 1.67289 1.56395 1.58389 1.25304 0.94506 0.92328 0.89395 0.85404 1.24266 0.92325 1.04195 0.90532 1.69027 1.03594 1.25343 1.15631 1.91691 1.10586 1.97338 1.24650 1.24157 0.92064 1.05398 0.86560 0.91753 0.94089 0.93187 0.92628 0.93257 0.89489 0.89744 0.83993 0.86847 0.81797 0.89275 0.87365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.58 8.85 71.98 0.64 -4.94 16 2 C 0.27 12.45 2.63 44.24 0.12 12.56 16 3 H 0.02 1.09 7.02 -2.38 -0.02 1.08 16 4 C -0.54 -27.61 8.31 25.60 0.21 -27.40 16 5 H 0.06 3.16 7.37 -2.91 -0.02 3.14 16 6 C 0.02 0.91 5.30 84.66 0.45 1.36 16 7 N -0.92 -50.09 11.38 21.45 0.24 -49.85 16 8 Si 0.96 41.87 29.54 68.60 2.03 43.89 16 9 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 10 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 11 H -0.28 -11.57 7.11 99.48 0.71 -10.86 16 12 N -1.00 -37.33 3.10 -520.42 -1.61 -38.95 16 13 C 0.09 2.75 9.10 127.77 1.16 3.91 16 14 S 2.79 103.59 5.56 -56.49 -0.31 103.28 16 15 O -1.00 -35.18 15.32 -118.78 -1.82 -37.00 16 16 O -1.00 -47.79 16.86 -118.78 -2.00 -49.79 16 17 O -0.74 -22.76 10.05 -118.26 -1.19 -23.95 16 18 C 0.04 0.96 2.98 31.81 0.09 1.06 16 19 H 0.13 2.35 5.43 -2.38 -0.01 2.33 16 20 C 0.02 0.33 7.57 86.68 0.66 0.98 16 21 N -0.47 -8.29 8.53 -179.92 -1.53 -9.82 16 22 O -0.23 -5.45 12.58 -52.14 -0.66 -6.11 16 23 C 0.00 -0.06 7.19 72.46 0.52 0.46 16 24 H 0.06 3.05 6.25 -2.38 -0.01 3.04 16 25 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.05 1.88 7.07 -2.39 -0.02 1.86 16 27 H 0.26 13.76 8.31 -92.71 -0.77 12.99 16 28 H 0.05 1.49 8.02 -2.39 -0.02 1.47 16 29 H 0.09 2.36 6.81 -2.39 -0.02 2.34 16 30 H 0.08 1.76 5.90 -2.39 -0.01 1.75 16 31 H 0.14 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.11 2.25 8.14 -2.38 -0.02 2.23 16 33 H 0.37 4.21 9.09 -89.69 -0.82 3.39 16 34 H 0.09 2.12 8.06 -2.39 -0.02 2.10 16 35 H 0.11 2.27 8.10 -2.39 -0.02 2.25 16 Total: -1.00 -68.07 298.01 -2.70 -70.77 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: 0.31 Total: 9.54 kcal Atomic # 6 Polarization: -15.86 SS G_CDS: 3.85 Total: -12.01 kcal Atomic # 7 Polarization: -95.72 SS G_CDS: -2.90 Total: -98.62 kcal Atomic # 8 Polarization: -111.18 SS G_CDS: -5.67 Total: -116.85 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.89 kcal Atomic # 16 Polarization: 103.59 SS G_CDS: -0.31 Total: 103.28 kcal Total: -68.07 -2.70 -70.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845933207.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.236 kcal (2) G-P(sol) polarization free energy of solvation -68.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds