Wall clock time and date at job start Tue Mar 31 2020 01:05:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86810 * 119.99821 * 2 1 4 4 H 1.48505 * 109.46914 * 270.00005 * 3 2 1 5 5 H 1.48498 * 109.47152 * 29.99710 * 3 2 1 6 6 H 1.48497 * 109.47038 * 150.00165 * 3 2 1 7 7 C 1.37873 * 120.00474 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99514 * 359.97438 * 7 2 1 9 9 C 1.50695 * 120.00248 * 179.97438 * 7 2 1 10 10 C 1.53007 * 109.47143 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47227 * 179.97438 * 10 9 7 12 12 O 1.45198 * 109.46946 * 179.97438 * 11 10 9 13 13 C 1.34713 * 116.99728 * 179.97438 * 12 11 10 14 14 O 1.21458 * 119.99898 * 0.02562 * 13 12 11 15 15 C 1.47799 * 119.99789 * 180.02562 * 13 12 11 16 16 C 1.39704 * 120.00271 * 0.02562 * 15 13 12 17 17 C 1.37662 * 120.05447 * 180.23361 * 16 15 13 18 18 C 1.39881 * 120.05415 * 359.49153 * 17 16 15 19 19 C 1.47424 * 119.99763 * 180.25355 * 18 17 16 20 20 O 1.21225 * 119.99523 * 180.25282 * 19 18 17 21 21 C 1.39666 * 119.99917 * 0.50469 * 18 17 16 22 22 C 1.38159 * 119.94514 * 359.75271 * 21 18 17 23 23 F 1.35099 * 120.02809 * 179.97438 * 22 21 18 24 24 H 0.97005 * 120.00423 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47466 * 60.00304 * 9 7 2 26 26 H 1.09000 * 109.47256 * 299.99595 * 9 7 2 27 27 H 1.08992 * 109.46976 * 59.99466 * 10 9 7 28 28 H 1.09000 * 109.46576 * 299.99842 * 10 9 7 29 29 H 1.09002 * 109.46840 * 59.99603 * 11 10 9 30 30 H 1.08994 * 109.46885 * 300.00301 * 11 10 9 31 31 H 1.08002 * 119.96772 * 359.94855 * 16 15 13 32 32 H 1.07998 * 119.96652 * 179.74004 * 17 16 15 33 33 H 1.07994 * 119.99940 * 0.25262 * 19 18 17 34 34 H 1.07993 * 120.02963 * 179.77668 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0014 9 6 3.5115 -1.1939 0.0000 10 6 4.0216 -2.6364 0.0001 11 6 5.5516 -2.6364 -0.0012 12 8 6.0356 -4.0053 -0.0004 13 6 7.3711 -4.1818 -0.0019 14 8 8.1109 -3.2185 -0.0033 15 6 7.9360 -5.5476 -0.0018 16 6 7.0851 -6.6555 -0.0008 17 6 7.6101 -7.9281 0.0041 18 6 8.9965 -8.1140 -0.0027 19 6 9.5574 -9.4773 -0.0031 20 8 10.7589 -9.6384 -0.0043 21 6 9.8493 -7.0079 -0.0038 22 6 9.3224 -5.7308 -0.0034 23 9 10.1458 -4.6597 -0.0039 24 1 -0.4851 0.8401 0.0004 25 1 3.8752 -0.6795 0.8895 26 1 3.8745 -0.6807 -0.8905 27 1 3.6579 -3.1505 -0.8895 28 1 3.6586 -3.1500 0.8904 29 1 5.9156 -2.1222 0.8883 30 1 5.9141 -2.1229 -0.8916 31 1 6.0144 -6.5135 0.0008 32 1 6.9509 -8.7836 0.0091 33 1 8.8979 -10.3325 -0.0022 34 1 10.9198 -7.1509 -0.0054 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849838071.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:05:26 Heat of formation + Delta-G solvation = -146.770366 kcal Electronic energy + Delta-G solvation = -20195.322800 eV Core-core repulsion = 16587.016477 eV Total energy + Delta-G solvation = -3608.306322 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.094 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.27424 -40.68731 -39.98313 -38.38151 -36.61433 -34.15774 -32.44143 -31.77545 -31.28460 -27.86400 -26.34839 -23.77229 -22.93682 -22.24599 -21.09729 -20.32744 -18.44949 -17.80854 -17.39036 -16.83523 -16.64932 -16.33689 -15.95149 -15.88735 -15.62313 -14.78289 -14.72110 -14.29338 -14.25343 -13.89565 -13.38862 -12.87868 -12.78226 -12.76101 -12.36088 -12.09191 -11.95309 -11.11994 -11.03634 -10.78813 -10.52569 -10.45885 -10.07435 -9.88717 -9.78737 -9.76028 -9.36700 -9.29352 -8.60299 -6.10590 -4.09973 -0.40615 0.58720 1.49132 2.40155 2.47866 3.14497 3.27540 3.35468 3.36763 3.38626 3.74839 4.09450 4.33908 4.35663 4.39890 4.59537 4.68758 5.06415 5.22643 5.35130 5.37883 5.39757 5.41073 5.51325 5.53808 5.78289 6.10004 6.20553 6.31856 6.54039 6.71981 6.74559 7.15392 7.27175 7.61693 7.71032 8.45402 8.93190 9.50870 11.02450 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.039590 B = 0.002824 C = 0.002643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.080393 B = 9912.052424 C =10593.383607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.068 3.932 3 Si 0.879 3.121 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.523 4.523 8 H 0.074 0.926 9 C -0.011 4.011 10 C -0.101 4.101 11 C 0.067 3.933 12 O -0.348 6.348 13 C 0.498 3.502 14 O -0.490 6.490 15 C -0.127 4.127 16 C -0.046 4.046 17 C -0.094 4.094 18 C -0.136 4.136 19 C 0.384 3.616 20 O -0.449 6.449 21 C -0.113 4.113 22 C 0.151 3.849 23 F -0.110 7.110 24 H 0.264 0.736 25 H 0.019 0.981 26 H 0.015 0.985 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.160 0.840 32 H 0.151 0.849 33 H 0.119 0.881 34 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.306 -19.165 0.027 25.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.134 4.134 3 Si 0.706 3.294 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.560 4.560 8 H 0.092 0.908 9 C -0.048 4.048 10 C -0.138 4.138 11 C -0.006 4.006 12 O -0.265 6.265 13 C 0.341 3.659 14 O -0.379 6.379 15 C -0.129 4.129 16 C -0.064 4.064 17 C -0.112 4.112 18 C -0.137 4.137 19 C 0.241 3.759 20 O -0.320 6.320 21 C -0.132 4.132 22 C 0.131 3.869 23 F -0.088 7.088 24 H 0.074 0.926 25 H 0.038 0.962 26 H 0.033 0.967 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.177 0.823 32 H 0.169 0.831 33 H 0.135 0.865 34 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 18.021 -18.754 0.029 26.010 hybrid contribution 0.378 1.459 -0.023 1.508 sum 18.400 -17.295 0.006 25.252 Atomic orbital electron populations 1.69901 1.06284 1.27030 1.50733 1.25012 0.94758 0.99189 0.94418 0.86791 0.80387 0.83580 0.78628 1.20189 1.21254 1.18965 1.21033 0.88973 0.94671 1.51359 0.90775 1.19525 0.97578 0.90971 0.96752 1.21574 0.88418 1.00948 1.02906 1.23597 0.97165 0.77427 1.02432 1.86515 1.21856 1.34844 1.83246 1.20818 0.82035 0.88834 0.74167 1.90904 1.60571 1.41985 1.44425 1.19585 0.92130 0.92821 1.08352 1.21493 1.01284 0.90394 0.93212 1.21458 0.93733 0.97984 0.98007 1.21069 0.94350 0.96276 1.02012 1.24258 0.90463 0.90952 0.70244 1.90557 1.19168 1.88789 1.33513 1.21362 1.02106 0.89563 1.00159 1.17584 0.86372 0.84106 0.98877 1.91640 1.70877 1.53591 1.92704 0.92603 0.96229 0.96673 0.91426 0.91395 0.91239 0.91235 0.82273 0.83149 0.86470 0.82837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.37 13.96 55.43 0.77 -26.60 16 2 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 3 Si 0.88 21.43 27.47 -169.99 -4.67 16.76 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.27 -6.21 6.54 56.52 0.37 -5.84 16 7 C -0.52 -14.55 9.66 -34.44 -0.33 -14.88 16 8 H 0.07 2.20 7.99 -52.48 -0.42 1.78 16 9 C -0.01 -0.25 4.04 -27.88 -0.11 -0.36 16 10 C -0.10 -1.90 5.53 -26.73 -0.15 -2.05 16 11 C 0.07 1.11 5.48 37.16 0.20 1.31 16 12 O -0.35 -5.23 9.46 -40.53 -0.38 -5.61 16 13 C 0.50 7.37 7.90 34.64 0.27 7.65 16 14 O -0.49 -8.74 15.11 -19.23 -0.29 -9.03 16 15 C -0.13 -1.43 5.88 -104.84 -0.62 -2.04 16 16 C -0.05 -0.35 9.60 -39.24 -0.38 -0.73 16 17 C -0.09 -0.47 9.77 -39.18 -0.38 -0.85 16 18 C -0.14 -0.84 5.87 -105.01 -0.62 -1.46 16 19 C 0.38 1.91 11.46 34.47 0.40 2.30 16 20 O -0.45 -4.12 17.15 5.60 0.10 -4.03 16 21 C -0.11 -0.97 9.56 -39.08 -0.37 -1.34 16 22 C 0.15 1.67 7.27 -39.01 -0.28 1.39 16 23 F -0.11 -1.50 15.52 2.25 0.03 -1.46 16 24 H 0.26 7.50 8.31 -40.82 -0.34 7.17 16 25 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 26 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 27 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 28 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 29 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.16 1.07 7.60 -52.49 -0.40 0.67 16 32 H 0.15 0.18 8.06 -52.49 -0.42 -0.24 16 33 H 0.12 0.06 8.06 -52.49 -0.42 -0.36 16 34 H 0.15 1.23 7.63 -52.49 -0.40 0.83 16 LS Contribution 311.88 15.07 4.70 4.70 Total: -1.00 -34.17 311.88 -5.90 -40.07 By element: Atomic # 1 Polarization: -1.91 SS G_CDS: -3.69 Total: -5.59 kcal Atomic # 6 Polarization: -6.75 SS G_CDS: -2.47 Total: -9.21 kcal Atomic # 7 Polarization: -27.37 SS G_CDS: 0.77 Total: -26.60 kcal Atomic # 8 Polarization: -18.09 SS G_CDS: -0.58 Total: -18.66 kcal Atomic # 9 Polarization: -1.50 SS G_CDS: 0.03 Total: -1.46 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.67 Total: 16.76 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -34.17 -5.90 -40.07 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849838071.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.702 kcal (2) G-P(sol) polarization free energy of solvation -34.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds