Wall clock time and date at job start Tue Mar 31 2020 01:05:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86810 * 119.99821 * 2 1 4 4 H 1.48505 * 109.46914 * 270.00005 * 3 2 1 5 5 H 1.48498 * 109.47152 * 29.99710 * 3 2 1 6 6 H 1.48497 * 109.47038 * 150.00165 * 3 2 1 7 7 C 1.37873 * 120.00474 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99514 * 359.97438 * 7 2 1 9 9 C 1.50695 * 120.00248 * 179.97438 * 7 2 1 10 10 C 1.53007 * 109.47143 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47227 * 179.97438 * 10 9 7 12 12 O 1.45198 * 109.46946 * 179.97438 * 11 10 9 13 13 C 1.34713 * 116.99728 * 179.97438 * 12 11 10 14 14 O 1.21458 * 119.99898 * 0.02562 * 13 12 11 15 15 C 1.47799 * 119.99789 * 180.02562 * 13 12 11 16 16 C 1.39704 * 120.00271 * 0.02562 * 15 13 12 17 17 C 1.37662 * 120.05447 * 180.23361 * 16 15 13 18 18 C 1.39881 * 120.05415 * 359.49153 * 17 16 15 19 19 C 1.47424 * 119.99763 * 180.25355 * 18 17 16 20 20 O 1.21225 * 119.99523 * 180.25282 * 19 18 17 21 21 C 1.39666 * 119.99917 * 0.50469 * 18 17 16 22 22 C 1.38159 * 119.94514 * 359.75271 * 21 18 17 23 23 F 1.35099 * 120.02809 * 179.97438 * 22 21 18 24 24 H 0.97005 * 120.00423 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47466 * 60.00304 * 9 7 2 26 26 H 1.09000 * 109.47256 * 299.99595 * 9 7 2 27 27 H 1.08992 * 109.46976 * 59.99466 * 10 9 7 28 28 H 1.09000 * 109.46576 * 299.99842 * 10 9 7 29 29 H 1.09002 * 109.46840 * 59.99603 * 11 10 9 30 30 H 1.08994 * 109.46885 * 300.00301 * 11 10 9 31 31 H 1.08002 * 119.96772 * 359.94855 * 16 15 13 32 32 H 1.07998 * 119.96652 * 179.74004 * 17 16 15 33 33 H 1.07994 * 119.99940 * 0.25262 * 19 18 17 34 34 H 1.07993 * 120.02963 * 179.77668 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0014 9 6 3.5115 -1.1939 0.0000 10 6 4.0216 -2.6364 0.0001 11 6 5.5516 -2.6364 -0.0012 12 8 6.0356 -4.0053 -0.0004 13 6 7.3711 -4.1818 -0.0019 14 8 8.1109 -3.2185 -0.0033 15 6 7.9360 -5.5476 -0.0018 16 6 7.0851 -6.6555 -0.0008 17 6 7.6101 -7.9281 0.0041 18 6 8.9965 -8.1140 -0.0027 19 6 9.5574 -9.4773 -0.0031 20 8 10.7589 -9.6384 -0.0043 21 6 9.8493 -7.0079 -0.0038 22 6 9.3224 -5.7308 -0.0034 23 9 10.1458 -4.6597 -0.0039 24 1 -0.4851 0.8401 0.0004 25 1 3.8752 -0.6795 0.8895 26 1 3.8745 -0.6807 -0.8905 27 1 3.6579 -3.1505 -0.8895 28 1 3.6586 -3.1500 0.8904 29 1 5.9156 -2.1222 0.8883 30 1 5.9141 -2.1229 -0.8916 31 1 6.0144 -6.5135 0.0008 32 1 6.9509 -8.7836 0.0091 33 1 8.8979 -10.3325 -0.0022 34 1 10.9198 -7.1509 -0.0054 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849838071.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:05:25 Heat of formation + Delta-G solvation = -167.983870 kcal Electronic energy + Delta-G solvation = -20196.242686 eV Core-core repulsion = 16587.016477 eV Total energy + Delta-G solvation = -3609.226209 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.094 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -50.16223 -41.70801 -40.67247 -39.03389 -37.88045 -35.95450 -33.94242 -32.97543 -31.90383 -29.53978 -27.18941 -25.09123 -23.89417 -23.04833 -22.11851 -21.88111 -19.31248 -19.04009 -18.62134 -18.12993 -17.84515 -17.33547 -16.84993 -16.56096 -16.30396 -16.20332 -15.71790 -15.48474 -15.33404 -14.81922 -14.70939 -14.29038 -14.06914 -13.86236 -13.66033 -13.28805 -12.88055 -12.70408 -12.57778 -12.19047 -12.07249 -11.78660 -11.62309 -11.42791 -11.36379 -10.92664 -10.77654 -10.45501 -10.01366 -8.30336 -6.34842 -1.06889 -0.03505 0.84351 1.36045 1.36388 1.38563 1.49298 1.59108 2.35085 2.51099 2.80402 3.05029 3.12622 3.42785 3.50956 3.87719 3.95678 3.97763 3.99943 4.25336 4.34123 4.45554 4.68165 4.73101 4.83943 4.86539 4.94271 4.95617 5.01367 5.20419 5.45652 5.48632 5.52817 5.61854 6.25532 6.39262 6.47150 6.73065 7.29726 8.85938 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.039590 B = 0.002824 C = 0.002643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.080393 B = 9912.052424 C =10593.383607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.006 3.994 3 Si 0.946 3.054 4 H -0.267 1.267 5 H -0.284 1.284 6 H -0.248 1.248 7 C -0.531 4.531 8 H 0.040 0.960 9 C -0.011 4.011 10 C -0.090 4.090 11 C 0.074 3.926 12 O -0.342 6.342 13 C 0.498 3.502 14 O -0.530 6.530 15 C -0.150 4.150 16 C -0.042 4.042 17 C -0.062 4.062 18 C -0.130 4.130 19 C 0.397 3.603 20 O -0.495 6.495 21 C -0.120 4.120 22 C 0.123 3.877 23 F -0.136 7.136 24 H 0.267 0.733 25 H 0.024 0.976 26 H 0.023 0.977 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.173 0.827 32 H 0.206 0.794 33 H 0.182 0.818 34 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.856 -21.364 0.017 27.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.191 4.191 3 Si 0.770 3.230 4 H -0.192 1.192 5 H -0.210 1.210 6 H -0.171 1.171 7 C -0.569 4.569 8 H 0.058 0.942 9 C -0.049 4.049 10 C -0.127 4.127 11 C 0.001 3.999 12 O -0.258 6.258 13 C 0.344 3.656 14 O -0.421 6.421 15 C -0.152 4.152 16 C -0.060 4.060 17 C -0.080 4.080 18 C -0.131 4.131 19 C 0.257 3.743 20 O -0.369 6.369 21 C -0.139 4.139 22 C 0.103 3.897 23 F -0.114 7.114 24 H 0.076 0.924 25 H 0.042 0.958 26 H 0.041 0.959 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.190 0.810 32 H 0.223 0.777 33 H 0.198 0.802 34 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 18.573 -20.981 0.019 28.021 hybrid contribution 0.149 1.943 -0.021 1.949 sum 18.722 -19.038 -0.001 26.701 Atomic orbital electron populations 1.70047 1.08184 1.28205 1.52438 1.25959 0.95601 1.03362 0.94159 0.85716 0.79534 0.78545 0.79226 1.19194 1.20957 1.17128 1.21386 0.91566 0.93426 1.50539 0.94212 1.19464 0.94427 0.93863 0.97119 1.21315 0.89982 0.98353 1.03062 1.23282 0.95539 0.78491 1.02594 1.86490 1.22418 1.33556 1.83378 1.21484 0.81311 0.90090 0.72758 1.90879 1.61110 1.43579 1.46539 1.19537 0.92463 0.91809 1.11388 1.21777 1.01488 0.90430 0.92322 1.21984 0.93559 0.98314 0.94118 1.21538 0.94874 0.96569 1.00147 1.25094 0.90209 0.91239 0.67765 1.90574 1.21540 1.89018 1.35730 1.21475 1.02596 0.89401 1.00379 1.17891 0.86331 0.84371 1.01088 1.91564 1.71602 1.54994 1.93256 0.92413 0.95782 0.95895 0.91295 0.91307 0.91201 0.91118 0.80971 0.77710 0.80241 0.83165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.70 13.96 21.45 0.30 -58.40 16 2 C 0.01 0.37 5.47 84.65 0.46 0.83 16 3 Si 0.95 43.79 27.47 68.60 1.88 45.68 16 4 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 5 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 6 H -0.25 -10.68 6.54 99.48 0.65 -10.03 16 7 C -0.53 -29.91 9.66 25.60 0.25 -29.66 16 8 H 0.04 2.43 7.99 -2.91 -0.02 2.41 16 9 C -0.01 -0.51 4.04 29.85 0.12 -0.39 16 10 C -0.09 -3.31 5.53 30.60 0.17 -3.14 16 11 C 0.07 2.42 5.48 71.98 0.39 2.81 16 12 O -0.34 -10.01 9.46 -56.23 -0.53 -10.54 16 13 C 0.50 14.82 7.90 70.35 0.56 15.37 16 14 O -0.53 -19.51 15.11 19.97 0.30 -19.21 16 15 C -0.15 -3.29 5.88 -20.00 -0.12 -3.41 16 16 C -0.04 -0.52 9.60 22.49 0.22 -0.31 16 17 C -0.06 -0.30 9.77 22.53 0.22 -0.08 16 18 C -0.13 -1.16 5.87 -20.12 -0.12 -1.28 16 19 C 0.40 2.21 11.46 70.24 0.81 3.01 16 20 O -0.49 -7.95 17.15 -2.86 -0.05 -8.00 16 21 C -0.12 -1.96 9.56 22.60 0.22 -1.74 16 22 C 0.12 2.79 7.27 22.64 0.16 2.95 16 23 F -0.14 -3.97 15.52 44.97 0.70 -3.27 16 24 H 0.27 15.41 8.31 -92.70 -0.77 14.64 16 25 H 0.02 1.07 7.20 -2.39 -0.02 1.05 16 26 H 0.02 1.00 7.57 -2.39 -0.02 0.98 16 27 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 28 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 29 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 30 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 31 H 0.17 1.70 7.60 -2.91 -0.02 1.68 16 32 H 0.21 -1.14 8.06 -2.91 -0.02 -1.17 16 33 H 0.18 -1.10 8.06 -2.91 -0.02 -1.12 16 34 H 0.15 2.48 7.63 -2.91 -0.02 2.45 16 Total: -1.00 -78.77 311.88 7.01 -71.77 By element: Atomic # 1 Polarization: -4.06 SS G_CDS: 1.07 Total: -3.00 kcal Atomic # 6 Polarization: -18.37 SS G_CDS: 3.34 Total: -15.03 kcal Atomic # 7 Polarization: -58.70 SS G_CDS: 0.30 Total: -58.40 kcal Atomic # 8 Polarization: -37.47 SS G_CDS: -0.28 Total: -37.75 kcal Atomic # 9 Polarization: -3.97 SS G_CDS: 0.70 Total: -3.27 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 1.88 Total: 45.68 kcal Total: -78.77 7.01 -71.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849838071.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.217 kcal (2) G-P(sol) polarization free energy of solvation -78.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds