Wall clock time and date at job start Tue Mar 31 2020 01:37:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.08998 * 109.47565 * 305.00629 * 3 2 1 5 5 C 1.50695 * 109.47581 * 185.00152 * 3 2 1 6 6 H 1.08004 * 120.00025 * 240.00388 * 5 3 2 7 7 C 1.37880 * 120.00044 * 59.99984 * 5 3 2 8 8 N 1.31511 * 120.00046 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00012 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.47239 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.46949 * 120.00034 * 9 7 5 12 12 H 1.48495 * 109.47204 * 240.00102 * 9 7 5 13 13 O 1.42903 * 109.46930 * 65.00104 * 3 2 1 14 14 C 1.35005 * 117.00145 * 270.00366 * 13 3 2 15 15 O 1.21722 * 119.99992 * 359.97438 * 14 13 3 16 16 C 1.41206 * 120.00473 * 179.97438 * 14 13 3 17 17 C 1.35782 * 120.00734 * 179.97438 * 16 14 13 18 18 C 1.50700 * 120.00407 * 179.97438 * 17 16 14 19 19 C 1.41502 * 119.99389 * 0.02562 * 17 16 14 20 20 C 1.37105 * 125.47501 * 114.99894 * 19 17 16 21 21 C 1.37396 * 113.21548 * 180.02562 * 20 19 17 22 22 C 1.33887 * 115.13737 * 359.97438 * 21 20 19 23 23 S 1.70609 * 111.01455 * 359.72844 * 22 21 20 24 24 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 27 27 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 28 28 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 29 29 H 0.96998 * 120.00524 * 180.02562 * 8 7 5 30 30 H 1.08005 * 119.99451 * 359.97438 * 16 14 13 31 31 H 1.08998 * 109.46737 * 90.00650 * 18 17 16 32 32 H 1.09000 * 109.47002 * 210.00538 * 18 17 16 33 33 H 1.09000 * 109.46758 * 330.00429 * 18 17 16 34 34 H 1.07996 * 123.38894 * 359.97438 * 20 19 17 35 35 H 1.07999 * 122.43151 * 180.02562 * 21 20 19 36 36 H 1.08000 * 124.49518 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3375 -2.1734 9 14 6.0049 0.8802 -1.3812 10 1 6.5988 1.5443 -0.1931 11 1 6.4961 -0.5189 -1.4628 12 1 6.3999 1.6158 -2.6092 13 8 1.6620 2.0813 1.2211 14 6 0.4720 2.7187 1.2365 15 8 -0.2248 2.7311 0.2385 16 6 0.0355 3.3710 2.4104 17 6 -1.1611 4.0125 2.4258 18 6 -1.6271 4.7082 3.6788 19 6 -1.9710 4.0269 1.2656 20 6 -3.2035 3.4378 1.1482 21 6 -3.7687 3.6070 -0.0927 22 6 -3.0312 4.3083 -0.9627 23 16 -1.5622 4.8098 -0.2548 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 3.8292 -0.0609 -2.9500 30 1 0.6536 3.3596 3.2960 31 1 -1.2796 5.7413 3.6714 32 1 -2.7162 4.6914 3.7200 33 1 -1.2226 4.1949 4.5511 34 1 -3.6814 2.8947 1.9500 35 1 -4.7379 3.2043 -0.3475 36 1 -3.3287 4.5306 -1.9768 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000857022291.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:49 Heat of formation + Delta-G solvation = -37.918524 kcal Electronic energy + Delta-G solvation = -19929.592525 eV Core-core repulsion = 16892.219548 eV Total energy + Delta-G solvation = -3037.372976 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.092 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.86143 -37.88312 -36.06712 -34.50682 -33.39075 -31.29163 -28.85738 -28.32061 -27.04846 -24.52175 -23.23272 -21.82387 -20.05332 -19.42783 -18.80687 -17.35064 -16.63739 -16.14128 -15.53675 -15.10236 -14.77431 -14.23458 -14.01792 -13.50488 -13.15338 -12.80463 -12.59393 -12.43089 -12.34741 -12.07436 -11.92052 -11.79905 -11.39518 -11.23296 -11.09597 -10.92983 -10.59129 -10.54228 -10.22786 -9.76155 -9.63475 -9.28533 -9.03965 -8.70860 -8.39575 -8.16045 -7.62714 -6.13146 -4.19688 0.71157 1.55152 2.21262 2.43770 2.98818 3.25751 3.32719 3.37810 3.76195 3.98325 4.40467 4.88936 5.17370 5.21337 5.29541 5.34857 5.44905 5.65555 5.72253 5.77658 5.93063 6.13205 6.30628 6.34761 6.37265 6.47396 6.57278 6.64399 6.75704 6.96828 7.06446 7.26508 7.35754 7.68468 7.82580 8.04344 8.24570 8.73837 9.01070 9.45890 10.93612 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.024293 B = 0.005079 C = 0.004831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.305307 B = 5511.498473 C = 5794.420411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.135 4.135 3 C 0.219 3.781 4 H 0.045 0.955 5 C -0.518 4.518 6 H 0.067 0.933 7 C 0.062 3.938 8 N -0.888 5.888 9 Si 0.908 3.092 10 H -0.271 1.271 11 H -0.282 1.282 12 H -0.282 1.282 13 O -0.348 6.348 14 C 0.472 3.528 15 O -0.502 6.502 16 C -0.180 4.180 17 C 0.028 3.972 18 C -0.115 4.115 19 C -0.175 4.175 20 C -0.120 4.120 21 C -0.146 4.146 22 C -0.266 4.266 23 S 0.257 5.743 24 H 0.032 0.968 25 H 0.029 0.971 26 H 0.052 0.948 27 H 0.038 0.962 28 H 0.106 0.894 29 H 0.264 0.736 30 H 0.139 0.861 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.134 0.866 35 H 0.129 0.871 36 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.878 8.339 7.881 16.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.173 4.173 3 C 0.165 3.835 4 H 0.063 0.937 5 C -0.556 4.556 6 H 0.085 0.915 7 C -0.140 4.140 8 N -0.526 5.526 9 Si 0.735 3.265 10 H -0.195 1.195 11 H -0.208 1.208 12 H -0.208 1.208 13 O -0.265 6.265 14 C 0.319 3.681 15 O -0.395 6.395 16 C -0.203 4.203 17 C 0.025 3.975 18 C -0.173 4.173 19 C -0.293 4.293 20 C -0.151 4.151 21 C -0.178 4.178 22 C -0.404 4.404 23 S 0.530 5.470 24 H 0.051 0.949 25 H 0.048 0.952 26 H 0.071 0.929 27 H 0.057 0.943 28 H 0.124 0.876 29 H 0.074 0.926 30 H 0.157 0.843 31 H 0.099 0.901 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.152 0.848 35 H 0.147 0.853 36 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -10.808 9.090 6.782 15.666 hybrid contribution -0.323 -1.274 0.071 1.317 sum -11.131 7.816 6.853 15.230 Atomic orbital electron populations 1.21828 0.98336 0.98677 1.00788 1.22021 0.92610 0.99660 1.03053 1.20187 0.94842 0.88796 0.79644 0.93680 1.21112 0.89873 1.38590 1.06045 0.91455 1.24880 0.99048 0.94881 0.95152 1.69907 1.35160 1.38069 1.09472 0.86278 0.84219 0.77836 0.78159 1.19515 1.20776 1.20813 1.86195 1.34390 1.62485 1.43400 1.19815 0.81384 0.78328 0.88544 1.90994 1.54662 1.57565 1.36264 1.21579 0.97587 1.02127 0.98987 1.19411 0.91804 0.92995 0.93254 1.20957 1.02200 1.00416 0.93713 1.22249 0.98968 1.09567 0.98561 1.20465 0.93694 1.02577 0.98357 1.19704 1.01635 1.03120 0.93363 1.25121 1.01143 1.09332 1.04790 1.82861 1.15283 1.45837 1.03031 0.94860 0.95213 0.92906 0.94270 0.87635 0.92577 0.84290 0.90070 0.90769 0.90521 0.84828 0.85311 0.82673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.17 8.55 37.16 0.32 -2.85 16 2 C -0.14 -3.46 5.48 -26.73 -0.15 -3.61 16 3 C 0.22 5.90 2.22 -27.89 -0.06 5.84 16 4 H 0.05 1.34 7.11 -51.93 -0.37 0.97 16 5 C -0.52 -14.72 8.89 -34.44 -0.31 -15.03 16 6 H 0.07 1.90 7.81 -52.48 -0.41 1.49 16 7 C 0.06 1.73 5.29 -17.82 -0.09 1.64 16 8 N -0.89 -25.46 11.29 55.43 0.63 -24.83 16 9 Si 0.91 21.29 29.54 -169.99 -5.02 16.27 16 10 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 13 O -0.35 -8.47 9.68 -41.33 -0.40 -8.87 16 14 C 0.47 9.93 6.05 31.86 0.19 10.12 16 15 O -0.50 -11.12 8.84 -19.44 -0.17 -11.29 16 16 C -0.18 -2.90 9.63 -39.34 -0.38 -3.28 16 17 C 0.03 0.38 5.71 -104.26 -0.60 -0.21 16 18 C -0.12 -1.06 10.02 36.01 0.36 -0.70 16 19 C -0.18 -2.66 3.85 -38.75 -0.15 -2.81 16 20 C -0.12 -1.71 10.25 -40.30 -0.41 -2.12 16 21 C -0.15 -2.03 10.14 -41.42 -0.42 -2.45 16 22 C -0.27 -3.82 10.92 29.20 0.32 -3.50 16 23 S 0.26 4.03 20.31 -107.50 -2.18 1.84 16 24 H 0.03 0.73 6.05 -51.93 -0.31 0.42 16 25 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.05 1.26 7.75 -51.93 -0.40 0.86 16 27 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 28 H 0.11 2.92 5.95 -51.93 -0.31 2.61 16 29 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 30 H 0.14 1.88 8.06 -52.48 -0.42 1.46 16 31 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.61 8.09 -51.93 -0.42 0.19 16 33 H 0.08 0.59 8.08 -51.93 -0.42 0.17 16 34 H 0.13 1.62 8.06 -52.49 -0.42 1.20 16 35 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 36 H 0.16 1.89 8.06 -52.49 -0.42 1.47 16 LS Contribution 313.79 15.07 4.73 4.73 Total: -1.00 -31.01 313.79 -8.54 -39.55 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -4.74 Total: 1.55 kcal Atomic # 6 Polarization: -17.58 SS G_CDS: -1.37 Total: -18.96 kcal Atomic # 7 Polarization: -25.46 SS G_CDS: 0.63 Total: -24.83 kcal Atomic # 8 Polarization: -19.59 SS G_CDS: -0.57 Total: -20.16 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: 4.03 SS G_CDS: -2.18 Total: 1.84 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.01 -8.54 -39.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857022291.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.631 kcal (2) G-P(sol) polarization free energy of solvation -31.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds