Wall clock time and date at job start Tue Mar 31 2020 01:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.08998 * 109.47565 * 305.00629 * 3 2 1 5 5 C 1.50695 * 109.47581 * 185.00152 * 3 2 1 6 6 H 1.08004 * 120.00025 * 240.00388 * 5 3 2 7 7 C 1.37880 * 120.00044 * 59.99984 * 5 3 2 8 8 N 1.31511 * 120.00046 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00012 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.47239 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.46949 * 120.00034 * 9 7 5 12 12 H 1.48495 * 109.47204 * 240.00102 * 9 7 5 13 13 O 1.42903 * 109.46930 * 65.00104 * 3 2 1 14 14 C 1.35005 * 117.00145 * 270.00366 * 13 3 2 15 15 O 1.21722 * 119.99992 * 359.97438 * 14 13 3 16 16 C 1.41206 * 120.00473 * 179.97438 * 14 13 3 17 17 C 1.35782 * 120.00734 * 179.97438 * 16 14 13 18 18 C 1.50700 * 120.00407 * 179.97438 * 17 16 14 19 19 C 1.41502 * 119.99389 * 0.02562 * 17 16 14 20 20 C 1.37105 * 125.47501 * 114.99894 * 19 17 16 21 21 C 1.37396 * 113.21548 * 180.02562 * 20 19 17 22 22 C 1.33887 * 115.13737 * 359.97438 * 21 20 19 23 23 S 1.70609 * 111.01455 * 359.72844 * 22 21 20 24 24 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 27 27 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 28 28 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 29 29 H 0.96998 * 120.00524 * 180.02562 * 8 7 5 30 30 H 1.08005 * 119.99451 * 359.97438 * 16 14 13 31 31 H 1.08998 * 109.46737 * 90.00650 * 18 17 16 32 32 H 1.09000 * 109.47002 * 210.00538 * 18 17 16 33 33 H 1.09000 * 109.46758 * 330.00429 * 18 17 16 34 34 H 1.07996 * 123.38894 * 359.97438 * 20 19 17 35 35 H 1.07999 * 122.43151 * 180.02562 * 21 20 19 36 36 H 1.08000 * 124.49518 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3375 -2.1734 9 14 6.0049 0.8802 -1.3812 10 1 6.5988 1.5443 -0.1931 11 1 6.4961 -0.5189 -1.4628 12 1 6.3999 1.6158 -2.6092 13 8 1.6620 2.0813 1.2211 14 6 0.4720 2.7187 1.2365 15 8 -0.2248 2.7311 0.2385 16 6 0.0355 3.3710 2.4104 17 6 -1.1611 4.0125 2.4258 18 6 -1.6271 4.7082 3.6788 19 6 -1.9710 4.0269 1.2656 20 6 -3.2035 3.4378 1.1482 21 6 -3.7687 3.6070 -0.0927 22 6 -3.0312 4.3083 -0.9627 23 16 -1.5622 4.8098 -0.2548 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 3.8292 -0.0609 -2.9500 30 1 0.6536 3.3596 3.2960 31 1 -1.2796 5.7413 3.6714 32 1 -2.7162 4.6914 3.7200 33 1 -1.2226 4.1949 4.5511 34 1 -3.6814 2.8947 1.9500 35 1 -4.7379 3.2043 -0.3475 36 1 -3.3287 4.5306 -1.9768 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000857022291.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:48 Heat of formation + Delta-G solvation = -54.150289 kcal Electronic energy + Delta-G solvation = -19930.296387 eV Core-core repulsion = 16892.219548 eV Total energy + Delta-G solvation = -3038.076838 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.092 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.48987 -39.15986 -37.65705 -35.76714 -35.41516 -33.32400 -30.20646 -29.40289 -28.87010 -25.75941 -25.12438 -23.34933 -21.71283 -20.96006 -19.99177 -19.00832 -18.50915 -17.72419 -17.07912 -16.73961 -16.46886 -15.69747 -15.17636 -14.83748 -14.66775 -14.43509 -13.94857 -13.63729 -13.51628 -13.44146 -13.31928 -13.18175 -13.10908 -12.92586 -12.79808 -12.70350 -12.51573 -12.12311 -11.73912 -11.71485 -11.35656 -11.17640 -10.74984 -10.50971 -10.21218 -9.34216 -8.88643 -8.25662 -6.42073 -0.50449 0.39362 1.03696 1.27005 1.40695 1.41205 1.55212 1.87348 2.26459 2.27641 2.58445 3.03705 3.84035 4.08402 4.24665 4.38423 4.41089 4.42183 4.48454 4.59858 4.65704 4.66803 4.81826 4.88360 5.01971 5.07606 5.11287 5.25561 5.26029 5.35554 5.45912 5.50871 5.55118 5.67789 5.71679 6.04245 6.24370 6.64536 7.14391 7.33972 8.81190 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.024293 B = 0.005079 C = 0.004831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.305307 B = 5511.498473 C = 5794.420411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.129 4.129 3 C 0.227 3.773 4 H 0.005 0.995 5 C -0.548 4.548 6 H 0.062 0.938 7 C 0.017 3.983 8 N -0.915 5.915 9 Si 0.978 3.022 10 H -0.265 1.265 11 H -0.272 1.272 12 H -0.276 1.276 13 O -0.364 6.364 14 C 0.464 3.536 15 O -0.521 6.521 16 C -0.219 4.219 17 C 0.065 3.935 18 C -0.114 4.114 19 C -0.196 4.196 20 C -0.118 4.118 21 C -0.151 4.151 22 C -0.269 4.269 23 S 0.204 5.796 24 H 0.036 0.964 25 H 0.055 0.945 26 H 0.033 0.967 27 H 0.040 0.960 28 H 0.082 0.918 29 H 0.269 0.731 30 H 0.163 0.837 31 H 0.101 0.899 32 H 0.090 0.910 33 H 0.098 0.902 34 H 0.159 0.841 35 H 0.156 0.844 36 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.792 8.529 9.450 18.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.167 4.167 3 C 0.173 3.827 4 H 0.023 0.977 5 C -0.585 4.585 6 H 0.080 0.920 7 C -0.182 4.182 8 N -0.553 5.553 9 Si 0.802 3.198 10 H -0.189 1.189 11 H -0.197 1.197 12 H -0.201 1.201 13 O -0.281 6.281 14 C 0.313 3.687 15 O -0.415 6.415 16 C -0.241 4.241 17 C 0.062 3.938 18 C -0.171 4.171 19 C -0.313 4.313 20 C -0.148 4.148 21 C -0.182 4.182 22 C -0.406 4.406 23 S 0.476 5.524 24 H 0.055 0.945 25 H 0.074 0.926 26 H 0.052 0.948 27 H 0.059 0.941 28 H 0.100 0.900 29 H 0.078 0.922 30 H 0.180 0.820 31 H 0.119 0.881 32 H 0.109 0.891 33 H 0.116 0.884 34 H 0.177 0.823 35 H 0.173 0.827 36 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -11.746 9.291 8.364 17.153 hybrid contribution -0.234 -1.261 -0.449 1.359 sum -11.979 8.030 7.915 16.451 Atomic orbital electron populations 1.21632 0.96226 1.00025 0.99996 1.21862 0.94429 0.98597 1.01812 1.19804 0.94209 0.89131 0.79570 0.97738 1.21400 0.90858 1.39623 1.06669 0.92002 1.25787 1.04106 0.93951 0.94404 1.70028 1.37268 1.38166 1.09873 0.85203 0.77956 0.78309 0.78351 1.18860 1.19680 1.20103 1.86172 1.36641 1.63467 1.41856 1.20675 0.80102 0.77907 0.90029 1.90990 1.54767 1.58377 1.37351 1.21567 0.99620 1.04858 0.98036 1.19960 0.89890 0.89707 0.94199 1.21136 1.03323 1.00932 0.91719 1.22554 0.99751 1.10614 0.98428 1.20845 0.93071 1.01739 0.99194 1.20092 1.02590 1.02448 0.93109 1.25384 1.00210 1.09278 1.05745 1.83058 1.17225 1.47328 1.04747 0.94453 0.92641 0.94751 0.94137 0.89963 0.92175 0.81959 0.88123 0.89095 0.88355 0.82334 0.82688 0.81007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.58 8.55 71.98 0.62 -4.97 16 2 C -0.13 -6.77 5.48 30.59 0.17 -6.60 16 3 C 0.23 12.77 2.22 29.85 0.07 12.83 16 4 H 0.00 0.30 7.11 -2.39 -0.02 0.29 16 5 C -0.55 -32.09 8.89 25.60 0.23 -31.86 16 6 H 0.06 3.58 7.81 -2.91 -0.02 3.56 16 7 C 0.02 0.96 5.29 84.66 0.45 1.41 16 8 N -0.92 -53.69 11.29 21.45 0.24 -53.45 16 9 Si 0.98 43.93 29.54 68.60 2.03 45.96 16 10 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 11 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 12 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 13 O -0.36 -18.30 9.68 -59.24 -0.57 -18.88 16 14 C 0.46 19.93 6.05 68.55 0.41 20.34 16 15 O -0.52 -23.80 8.84 19.11 0.17 -23.63 16 16 C -0.22 -6.86 9.63 22.43 0.22 -6.64 16 17 C 0.07 1.66 5.71 -19.63 -0.11 1.55 16 18 C -0.11 -1.66 10.02 71.24 0.71 -0.94 16 19 C -0.20 -5.69 3.85 22.81 0.09 -5.60 16 20 C -0.12 -3.07 10.25 21.80 0.22 -2.84 16 21 C -0.15 -3.88 10.14 21.08 0.21 -3.67 16 22 C -0.27 -7.52 10.92 66.83 0.73 -6.79 16 23 S 0.20 6.47 20.31 -56.49 -1.15 5.33 16 24 H 0.04 1.65 6.05 -2.39 -0.01 1.64 16 25 H 0.05 2.21 8.14 -2.39 -0.02 2.20 16 26 H 0.03 1.67 7.75 -2.38 -0.02 1.65 16 27 H 0.04 2.06 8.14 -2.39 -0.02 2.04 16 28 H 0.08 4.70 5.95 -2.39 -0.01 4.69 16 29 H 0.27 14.71 8.31 -92.71 -0.77 13.94 16 30 H 0.16 4.17 8.06 -2.91 -0.02 4.15 16 31 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.09 1.09 8.09 -2.39 -0.02 1.07 16 33 H 0.10 1.09 8.08 -2.39 -0.02 1.07 16 34 H 0.16 3.27 8.06 -2.91 -0.02 3.25 16 35 H 0.16 3.13 8.06 -2.91 -0.02 3.10 16 36 H 0.17 4.05 8.06 -2.91 -0.02 4.03 16 Total: -1.00 -69.50 313.79 5.80 -63.70 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: 1.07 Total: 14.75 kcal Atomic # 6 Polarization: -37.79 SS G_CDS: 4.01 Total: -33.78 kcal Atomic # 7 Polarization: -53.69 SS G_CDS: 0.24 Total: -53.45 kcal Atomic # 8 Polarization: -42.10 SS G_CDS: -0.40 Total: -42.50 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Atomic # 16 Polarization: 6.47 SS G_CDS: -1.15 Total: 5.33 kcal Total: -69.50 5.80 -63.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857022291.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.550 kcal (2) G-P(sol) polarization free energy of solvation -69.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds