Wall clock time and date at job start Tue Mar 31 2020 01:37:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09002 * 109.46906 * 55.00224 * 3 2 1 5 5 C 1.50699 * 109.47482 * 174.99860 * 3 2 1 6 6 H 1.08000 * 120.00147 * 120.00321 * 5 3 2 7 7 C 1.37878 * 120.00379 * 300.00215 * 5 3 2 8 8 N 1.31518 * 119.99761 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00461 * 179.97438 * 7 5 3 10 10 H 1.48490 * 109.47273 * 89.99733 * 9 7 5 11 11 H 1.48496 * 109.47169 * 210.00187 * 9 7 5 12 12 H 1.48505 * 109.46665 * 329.99637 * 9 7 5 13 13 O 1.42899 * 109.47478 * 295.00066 * 3 2 1 14 14 C 1.35011 * 116.99955 * 89.99344 * 13 3 2 15 15 O 1.21717 * 119.99831 * 0.02562 * 14 13 3 16 16 C 1.41207 * 119.99981 * 180.02562 * 14 13 3 17 17 C 1.35783 * 120.00160 * 180.02562 * 16 14 13 18 18 C 1.50698 * 120.00191 * 179.97438 * 17 16 14 19 19 C 1.41498 * 119.99853 * 0.02562 * 17 16 14 20 20 C 1.37093 * 125.47773 * 114.99542 * 19 17 16 21 21 C 1.37403 * 113.21728 * 180.02562 * 20 19 17 22 22 C 1.33886 * 115.13352 * 0.02562 * 21 20 19 23 23 S 1.70600 * 111.01812 * 359.72808 * 22 21 20 24 24 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 25 25 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 26 26 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 28 28 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 29 29 H 0.96999 * 120.00301 * 180.02562 * 8 7 5 30 30 H 1.08008 * 120.00188 * 359.97438 * 16 14 13 31 31 H 1.09003 * 109.46620 * 90.00249 * 18 17 16 32 32 H 1.08999 * 109.47468 * 209.99826 * 18 17 16 33 33 H 1.08996 * 109.47489 * 330.00953 * 18 17 16 34 34 H 1.07995 * 123.39697 * 359.97438 * 20 19 17 35 35 H 1.08008 * 122.43502 * 180.02562 * 21 20 19 36 36 H 1.08000 * 124.49274 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1434 0.8783 1.2280 8 7 3.4063 0.3373 2.1733 9 14 6.0050 0.8799 1.3812 10 1 6.4429 2.1127 2.0836 11 1 6.4391 -0.3112 2.1545 12 1 6.6131 0.8392 0.0269 13 8 1.6621 2.0814 -1.2210 14 6 0.4720 2.7188 -1.2364 15 8 -0.2247 2.7311 -0.2384 16 6 0.0356 3.3712 -2.4102 17 6 -1.1610 4.0128 -2.4255 18 6 -1.6265 4.7095 -3.6780 19 6 -1.9705 4.0280 -1.2650 20 6 -2.2970 5.1430 -0.5373 21 6 -3.0983 4.8682 0.5446 22 6 -3.4185 3.5777 0.7019 23 16 -2.7239 2.6207 -0.5278 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5139 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 3.8293 -0.0605 2.9503 30 1 0.6540 3.3607 -3.2956 31 1 -2.1985 4.0124 -4.2903 32 1 -2.2557 5.5580 -3.4094 33 1 -0.7619 5.0620 -4.2405 34 1 -1.9579 6.1371 -0.7884 35 1 -3.4446 5.6373 1.2191 36 1 -4.0379 3.1941 1.4990 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000857022292.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:51 Heat of formation + Delta-G solvation = -37.612841 kcal Electronic energy + Delta-G solvation = -19948.176779 eV Core-core repulsion = 16910.817058 eV Total energy + Delta-G solvation = -3037.359721 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.092 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.86286 -37.89032 -36.06164 -34.50884 -33.39264 -31.30082 -28.85716 -28.32390 -27.04841 -24.52254 -23.22769 -21.85196 -20.04123 -19.43239 -18.81252 -17.35055 -16.63822 -16.12777 -15.53111 -15.19643 -14.70246 -14.24050 -14.02082 -13.54360 -13.12762 -12.79495 -12.56892 -12.40898 -12.35391 -12.19067 -11.87695 -11.78031 -11.39780 -11.22254 -11.15042 -10.89500 -10.68223 -10.48624 -10.23752 -9.78549 -9.62582 -9.27819 -9.03547 -8.69797 -8.40003 -8.15388 -7.63840 -6.12830 -4.19311 0.70986 1.54859 2.20846 2.42875 2.98885 3.27239 3.32714 3.36823 3.75709 3.98825 4.40603 4.88972 5.17561 5.21445 5.29433 5.34816 5.44803 5.65495 5.72607 5.77764 5.93047 6.13282 6.28927 6.34120 6.35672 6.46784 6.55919 6.64388 6.75590 6.95572 7.05167 7.25475 7.35195 7.68423 7.82645 8.04269 8.24629 8.73864 9.01002 9.46148 10.93926 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.024699 B = 0.005098 C = 0.004776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.389843 B = 5490.974318 C = 5860.890963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.136 4.136 3 C 0.219 3.781 4 H 0.045 0.955 5 C -0.519 4.519 6 H 0.067 0.933 7 C 0.062 3.938 8 N -0.888 5.888 9 Si 0.908 3.092 10 H -0.279 1.279 11 H -0.284 1.284 12 H -0.272 1.272 13 O -0.348 6.348 14 C 0.472 3.528 15 O -0.502 6.502 16 C -0.180 4.180 17 C 0.028 3.972 18 C -0.115 4.115 19 C -0.176 4.176 20 C -0.120 4.120 21 C -0.146 4.146 22 C -0.267 4.267 23 S 0.257 5.743 24 H 0.032 0.968 25 H 0.053 0.947 26 H 0.030 0.970 27 H 0.106 0.894 28 H 0.039 0.961 29 H 0.265 0.735 30 H 0.139 0.861 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.135 0.865 35 H 0.129 0.871 36 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.810 6.567 -8.493 16.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.174 4.174 3 C 0.165 3.835 4 H 0.063 0.937 5 C -0.557 4.557 6 H 0.085 0.915 7 C -0.139 4.139 8 N -0.526 5.526 9 Si 0.736 3.264 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.196 1.196 13 O -0.265 6.265 14 C 0.319 3.681 15 O -0.395 6.395 16 C -0.203 4.203 17 C 0.025 3.975 18 C -0.173 4.173 19 C -0.294 4.294 20 C -0.151 4.151 21 C -0.178 4.178 22 C -0.405 4.405 23 S 0.530 5.470 24 H 0.051 0.949 25 H 0.072 0.928 26 H 0.049 0.951 27 H 0.124 0.876 28 H 0.058 0.942 29 H 0.075 0.925 30 H 0.157 0.843 31 H 0.099 0.901 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.152 0.848 35 H 0.147 0.853 36 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -13.045 4.855 -8.270 16.191 hybrid contribution 1.122 1.450 0.892 2.039 sum -11.923 6.305 -7.379 15.374 Atomic orbital electron populations 1.21857 0.98359 0.98726 1.00786 1.22024 0.92639 0.99629 1.03096 1.20179 0.94843 0.88784 0.79653 0.93732 1.21072 0.89891 1.38643 1.06088 0.91523 1.24877 0.99053 0.94863 0.95150 1.69898 1.35249 1.38050 1.09427 0.86325 0.84195 0.77630 0.78297 1.20481 1.20996 1.19631 1.86196 1.34124 1.62665 1.43471 1.19816 0.81379 0.78012 0.88885 1.90993 1.53578 1.58761 1.36160 1.21580 0.97351 1.02538 0.98809 1.19412 0.91615 0.93150 0.93298 1.20957 1.02271 1.00256 0.93805 1.22250 1.07434 0.97846 1.01860 1.20479 1.00422 0.97884 0.96314 1.19715 1.02248 0.96085 0.99760 1.25123 1.09682 0.98788 1.06868 1.82812 1.37300 1.08892 1.18028 0.94902 0.92751 0.95107 0.87611 0.94242 0.92528 0.84276 0.90101 0.90750 0.90495 0.84768 0.85274 0.82675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 8.55 37.16 0.32 -2.75 16 2 C -0.14 -3.42 5.48 -26.74 -0.15 -3.57 16 3 C 0.22 5.90 2.22 -27.89 -0.06 5.84 16 4 H 0.04 1.34 7.11 -51.93 -0.37 0.97 16 5 C -0.52 -14.81 8.89 -34.44 -0.31 -15.11 16 6 H 0.07 1.88 7.81 -52.49 -0.41 1.47 16 7 C 0.06 1.74 5.29 -17.82 -0.09 1.65 16 8 N -0.89 -25.50 11.29 55.43 0.63 -24.87 16 9 Si 0.91 21.39 29.54 -169.99 -5.02 16.37 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 13 O -0.35 -8.47 9.68 -41.35 -0.40 -8.87 16 14 C 0.47 9.94 6.05 31.86 0.19 10.14 16 15 O -0.50 -11.15 8.83 -19.43 -0.17 -11.32 16 16 C -0.18 -2.90 9.63 -39.33 -0.38 -3.28 16 17 C 0.03 0.38 5.71 -104.26 -0.60 -0.21 16 18 C -0.12 -1.06 10.02 36.00 0.36 -0.70 16 19 C -0.18 -2.68 3.85 -38.76 -0.15 -2.83 16 20 C -0.12 -1.73 10.25 -40.30 -0.41 -2.14 16 21 C -0.15 -2.05 10.14 -41.41 -0.42 -2.47 16 22 C -0.27 -3.84 10.92 29.20 0.32 -3.52 16 23 S 0.26 3.97 20.30 -107.50 -2.18 1.79 16 24 H 0.03 0.68 6.05 -51.93 -0.31 0.37 16 25 H 0.05 1.25 7.75 -51.93 -0.40 0.84 16 26 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.11 2.90 5.95 -51.93 -0.31 2.59 16 28 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 30 H 0.14 1.88 8.06 -52.48 -0.42 1.46 16 31 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.61 8.09 -51.93 -0.42 0.19 16 33 H 0.08 0.60 8.08 -51.93 -0.42 0.18 16 34 H 0.13 1.65 8.06 -52.49 -0.42 1.23 16 35 H 0.13 1.51 8.06 -52.48 -0.42 1.09 16 36 H 0.16 1.89 8.06 -52.49 -0.42 1.46 16 LS Contribution 313.78 15.07 4.73 4.73 Total: -1.00 -31.14 313.78 -8.54 -39.67 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -4.74 Total: 1.46 kcal Atomic # 6 Polarization: -17.58 SS G_CDS: -1.38 Total: -18.95 kcal Atomic # 7 Polarization: -25.50 SS G_CDS: 0.63 Total: -24.87 kcal Atomic # 8 Polarization: -19.62 SS G_CDS: -0.57 Total: -20.19 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: 3.97 SS G_CDS: -2.18 Total: 1.79 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.14 -8.54 -39.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857022292.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.059 kcal (2) G-P(sol) polarization free energy of solvation -31.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds