Wall clock time and date at job start Tue Mar 31 2020 01:02:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 120.00036 * 2 1 4 4 H 1.48499 * 109.47005 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47273 * 299.99692 * 3 2 1 6 6 H 1.48504 * 109.47411 * 60.00104 * 3 2 1 7 7 C 1.37876 * 119.99872 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00385 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99763 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.46667 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.46743 * 180.02562 * 10 9 7 12 12 N 1.46500 * 109.47219 * 180.02562 * 11 10 9 13 13 C 1.38362 * 120.00338 * 179.97438 * 12 11 10 14 14 N 1.32986 * 120.83306 * 0.02562 * 13 12 11 15 15 C 1.32084 * 121.02812 * 179.97438 * 14 13 12 16 16 N 1.31557 * 122.71419 * 359.97438 * 15 14 13 17 17 C 1.33186 * 120.70857 * 0.02562 * 16 15 14 18 18 N 1.36854 * 134.27384 * 180.02562 * 17 16 15 19 19 H 0.97000 * 124.98855 * 359.94518 * 18 17 16 20 20 C 1.37108 * 110.02382 * 179.97438 * 18 17 16 21 21 Cl 1.73599 * 125.10520 * 179.97438 * 20 18 17 22 22 C 1.34457 * 109.78236 * 0.24219 * 20 18 17 23 23 C 1.40292 * 120.83791 * 179.97438 * 13 12 11 24 24 H 0.97006 * 119.99775 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47330 * 59.99979 * 9 7 2 26 26 H 1.09001 * 109.47117 * 299.99453 * 9 7 2 27 27 H 1.09005 * 109.47327 * 59.99930 * 10 9 7 28 28 H 1.08999 * 109.47544 * 299.99356 * 10 9 7 29 29 H 1.08992 * 109.47458 * 60.00093 * 11 10 9 30 30 H 1.09001 * 109.47070 * 299.99888 * 11 10 9 31 31 H 0.97004 * 119.99987 * 0.02562 * 12 11 10 32 32 H 1.08001 * 118.64302 * 179.97438 * 15 14 13 33 33 H 1.07999 * 126.59580 * 179.75505 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4800 -4.9871 -0.0001 12 7 2.4320 -6.1006 0.0005 13 6 1.9708 -7.4051 0.0006 14 7 0.6670 -7.6671 -0.0003 15 6 0.2224 -8.9109 -0.0007 16 7 1.0255 -9.9529 -0.0007 17 6 2.3476 -9.7927 0.0002 18 7 3.4140 -10.6505 0.0001 19 1 3.3492 -11.6183 -0.0001 20 6 4.5872 -9.9411 0.0008 21 17 6.1764 -10.6398 0.0016 22 6 4.3220 -8.6229 0.0069 23 6 2.8667 -8.4847 0.0007 24 1 -0.4850 0.8401 -0.0004 25 1 0.6245 -2.5571 -0.8897 26 1 0.6239 -2.5567 0.8903 27 1 2.8718 -3.6043 0.8905 28 1 2.8717 -3.6044 -0.8895 29 1 0.8537 -5.0446 -0.8902 30 1 0.8531 -5.0450 0.8897 31 1 3.3857 -5.9234 0.0016 32 1 -0.8444 -9.0794 -0.0011 33 1 5.0450 -7.8207 0.0126 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000865510856.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:50 Heat of formation + Delta-G solvation = 46.209944 kcal Electronic energy + Delta-G solvation = -18173.058758 eV Core-core repulsion = 15066.042567 eV Total energy + Delta-G solvation = -3107.016191 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.079 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.86112 -39.89046 -38.00431 -37.66721 -35.73707 -34.06047 -32.57173 -32.06735 -30.02518 -28.21162 -25.32517 -24.75775 -23.57455 -22.16063 -21.83590 -20.24408 -18.73472 -18.41931 -17.57492 -16.80508 -16.72956 -16.47452 -16.15009 -15.54704 -15.16127 -14.87127 -14.73665 -14.54473 -14.24995 -13.82166 -13.67191 -12.95607 -12.73424 -12.57068 -12.49348 -12.30604 -12.19695 -11.68757 -11.54154 -11.46811 -11.15477 -10.53581 -10.24245 -10.17085 -10.06121 -8.65592 -8.17695 -6.28459 -0.06908 0.35640 0.39730 1.35221 1.42810 1.43328 1.56092 1.86961 2.11369 2.43938 2.96027 3.16357 3.31744 3.50760 3.70802 3.85800 4.18122 4.23024 4.28727 4.57400 4.61651 4.98006 5.01098 5.04559 5.19242 5.20286 5.51769 5.56589 5.71586 5.75186 5.87499 6.01167 6.19757 6.26735 6.67012 6.89262 7.39498 7.41133 8.94443 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.025429 B = 0.003000 C = 0.002690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.858538 B = 9331.093525 C =10406.201628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.964 3.036 4 H -0.260 1.260 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.540 4.540 8 H 0.064 0.936 9 C 0.026 3.974 10 C -0.105 4.105 11 C 0.143 3.857 12 N -0.687 5.687 13 C 0.485 3.515 14 N -0.620 5.620 15 C 0.364 3.636 16 N -0.588 5.588 17 C 0.342 3.658 18 N -0.555 5.555 19 H 0.434 0.566 20 C 0.101 3.899 21 Cl 0.013 6.987 22 C -0.129 4.129 23 C -0.280 4.280 24 H 0.263 0.737 25 H -0.006 1.006 26 H -0.006 1.006 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.421 0.579 32 H 0.229 0.771 33 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.445 -22.953 0.010 25.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.200 4.200 3 Si 0.789 3.211 4 H -0.183 1.183 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.578 4.578 8 H 0.082 0.918 9 C -0.011 4.011 10 C -0.143 4.143 11 C 0.019 3.981 12 N -0.317 5.317 13 C 0.235 3.765 14 N -0.350 5.350 15 C 0.074 3.926 16 N -0.315 5.315 17 C 0.102 3.898 18 N -0.167 5.167 19 H 0.275 0.725 20 C -0.031 4.031 21 Cl 0.042 6.958 22 C -0.156 4.156 23 C -0.294 4.294 24 H 0.072 0.928 25 H 0.013 0.987 26 H 0.013 0.987 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.260 0.740 32 H 0.245 0.755 33 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 9.468 -23.078 0.009 24.945 hybrid contribution 1.162 0.601 0.001 1.308 sum 10.630 -22.477 0.010 24.864 Atomic orbital electron populations 1.70109 1.07826 1.27673 1.51791 1.25980 0.95735 1.03392 0.94868 0.85408 0.79211 0.78868 0.77609 1.18336 1.20601 1.20612 1.21723 0.93697 0.92165 1.50261 0.91766 1.18912 0.94347 0.92645 0.95239 1.21621 0.98580 0.92285 1.01832 1.21259 0.91340 0.84212 1.01279 1.44669 1.10140 1.01295 1.75623 1.18213 0.88259 0.85093 0.84980 1.68198 1.13391 1.25336 1.28035 1.25033 1.00625 0.80363 0.86598 1.67456 1.00705 1.36715 1.26628 1.18090 0.87874 0.87246 0.96557 1.41232 1.01591 1.09490 1.64353 0.72512 1.20545 0.81544 0.90019 1.11027 1.98430 1.15501 1.84653 1.97230 1.21518 0.92401 0.94414 1.07273 1.19854 0.95510 0.93692 1.20344 0.92828 0.98730 0.98722 0.91705 0.91715 0.92573 0.92585 0.74030 0.75515 0.80162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.35 13.29 21.45 0.28 -56.07 16 2 C 0.00 -0.12 5.46 84.65 0.46 0.35 16 3 Si 0.96 43.49 29.54 68.60 2.03 45.52 16 4 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 5 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 6 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 7 C -0.54 -29.83 9.11 25.60 0.23 -29.60 16 8 H 0.06 3.36 7.74 -2.91 -0.02 3.33 16 9 C 0.03 1.33 4.97 29.85 0.15 1.48 16 10 C -0.11 -3.94 5.27 30.59 0.16 -3.78 16 11 C 0.14 4.75 5.74 86.38 0.50 5.24 16 12 N -0.69 -18.77 5.69 -344.16 -1.96 -20.73 16 13 C 0.48 13.85 7.55 133.39 1.01 14.86 16 14 N -0.62 -18.47 9.72 -197.15 -1.92 -20.38 16 15 C 0.36 9.11 12.23 180.87 2.21 11.33 16 16 N -0.59 -15.07 10.47 -197.82 -2.07 -17.14 16 17 C 0.34 8.40 8.48 133.94 1.14 9.53 16 18 N -0.55 -10.06 6.04 -183.34 -1.11 -11.17 16 19 H 0.43 5.59 8.96 -92.71 -0.83 4.76 16 20 C 0.10 1.74 7.70 83.00 0.64 2.38 16 21 Cl 0.01 0.17 29.29 -2.72 -0.08 0.09 16 22 C -0.13 -2.47 10.93 23.47 0.26 -2.22 16 23 C -0.28 -7.05 6.32 -20.11 -0.13 -7.18 16 24 H 0.26 14.89 8.31 -92.70 -0.77 14.12 16 25 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 26 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 27 H 0.06 2.30 8.14 -2.38 -0.02 2.28 16 28 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 29 H 0.06 1.99 8.14 -2.39 -0.02 1.98 16 30 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.42 9.39 8.40 -92.71 -0.78 8.61 16 32 H 0.23 3.92 8.06 -2.91 -0.02 3.90 16 33 H 0.18 2.55 8.06 -2.91 -0.02 2.53 16 Total: -1.00 -67.47 307.49 1.36 -66.11 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -0.45 Total: 11.38 kcal Atomic # 6 Polarization: -4.24 SS G_CDS: 6.62 Total: 2.39 kcal Atomic # 7 Polarization: -118.72 SS G_CDS: -6.77 Total: -125.49 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Atomic # 17 Polarization: 0.17 SS G_CDS: -0.08 Total: 0.09 kcal Total: -67.47 1.36 -66.11 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865510856.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.318 kcal (2) G-P(sol) polarization free energy of solvation -67.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds