Wall clock time and date at job start Tue Mar 31 2020 01:50:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.46820 * 2 1 4 4 C 1.50706 * 109.46923 * 119.99413 * 2 1 3 5 5 H 1.07992 * 119.99911 * 120.00588 * 4 2 1 6 6 C 1.37878 * 120.00134 * 299.99877 * 4 2 1 7 7 N 1.31510 * 119.99794 * 180.02562 * 6 4 2 8 8 Si 1.86804 * 120.00009 * 0.02562 * 6 4 2 9 9 H 1.48498 * 109.47285 * 89.99720 * 8 6 4 10 10 H 1.48499 * 109.46934 * 209.99851 * 8 6 4 11 11 H 1.48507 * 109.47033 * 329.99610 * 8 6 4 12 12 N 1.46897 * 109.47305 * 239.99782 * 2 1 3 13 13 C 1.46896 * 110.99976 * 60.40435 * 12 2 1 14 14 C 1.36633 * 111.00148 * 184.36256 * 12 2 1 15 15 N 1.36167 * 120.87337 * 305.26427 * 14 12 2 16 16 H 0.97007 * 119.72646 * 359.97438 * 15 14 12 17 17 C 1.35994 * 120.55157 * 179.97438 * 15 14 12 18 18 N 1.30055 * 122.47800 * 359.97438 * 17 15 14 19 19 C 1.35494 * 121.03010 * 0.02562 * 18 17 15 20 20 N 1.32633 * 133.97014 * 179.97438 * 19 18 17 21 21 C 1.33235 * 110.60966 * 179.97438 * 20 19 18 22 22 Cl 1.73599 * 125.05996 * 180.02562 * 21 20 19 23 23 C 1.36178 * 109.87769 * 359.97438 * 21 20 19 24 24 C 1.39675 * 120.87203 * 125.23836 * 14 12 2 25 25 H 1.09010 * 109.47369 * 293.80845 * 1 2 3 26 26 H 1.08993 * 109.47410 * 53.80817 * 1 2 3 27 27 H 1.09000 * 109.47280 * 173.81284 * 1 2 3 28 28 H 0.97005 * 120.00028 * 180.02562 * 7 6 4 29 29 H 1.08998 * 109.46911 * 183.95694 * 13 12 2 30 30 H 1.08996 * 109.47266 * 303.95599 * 13 12 2 31 31 H 1.08997 * 109.47011 * 63.96116 * 13 12 2 32 32 H 1.07998 * 118.76163 * 180.02562 * 17 15 14 33 33 H 1.08006 * 126.81445 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5883 1.1316 6 6 1.6992 -0.2391 2.4828 7 7 2.1380 -0.8587 3.5566 8 14 0.6247 1.2793 2.6541 9 1 -0.8029 0.8730 2.6997 10 1 0.9758 1.9954 3.9067 11 1 0.8470 2.1767 1.4919 12 7 2.0197 -0.6925 -1.1994 13 6 1.5566 -0.0209 -2.4210 14 6 3.3820 -0.7954 -1.1835 15 7 4.1645 0.3093 -1.0370 16 1 3.7517 1.1822 -0.9429 17 6 5.5199 0.1993 -1.0216 18 7 6.1292 -0.9432 -1.1429 19 6 5.4311 -2.0947 -1.2930 20 7 5.7744 -3.3678 -1.4357 21 6 4.6915 -4.1358 -1.5482 22 17 4.7083 -5.8600 -1.7500 23 6 3.5696 -3.3670 -1.4802 24 6 4.0087 -2.0366 -1.3165 25 1 -0.3634 0.4149 0.9403 26 1 -0.3634 0.6068 -0.8293 27 1 -0.3634 -1.0217 -0.1108 28 1 1.9033 -0.5275 4.4377 29 1 1.8741 -0.5930 -3.2927 30 1 0.4689 0.0477 -2.4079 31 1 1.9833 0.9809 -2.4688 32 1 6.1126 1.0944 -0.9034 33 1 2.5466 -3.7082 -1.5407 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000865575932.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:50:44 Heat of formation + Delta-G solvation = 119.054717 kcal Electronic energy + Delta-G solvation = -19939.245335 eV Core-core repulsion = 16835.387931 eV Total energy + Delta-G solvation = -3103.857404 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.079 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.70891 -39.16594 -37.51570 -35.87969 -33.76803 -32.82415 -31.03521 -29.76900 -28.26025 -26.71984 -24.81829 -23.40719 -23.22240 -20.83522 -19.53365 -18.17686 -17.87863 -16.98081 -16.80816 -15.82151 -15.39810 -14.73856 -14.39356 -13.91052 -13.80024 -13.38206 -13.14840 -12.89948 -12.84491 -12.73055 -12.27946 -11.63504 -11.35180 -11.21352 -11.03534 -10.76357 -10.67367 -10.44597 -10.08066 -9.90735 -9.62738 -8.97978 -8.76220 -8.63345 -8.11335 -7.20901 -6.42140 -4.48438 0.62676 1.54461 2.46623 2.69741 2.95398 2.99880 3.10442 3.56075 3.68438 4.01934 4.15081 4.24148 4.74639 4.84151 5.06642 5.11250 5.24045 5.44290 5.62398 5.74559 5.82612 5.93454 6.01288 6.16940 6.23640 6.40214 6.63258 6.73980 6.83962 6.92300 7.17951 7.20395 7.46033 8.03682 8.11243 8.53815 8.66049 9.12146 10.69221 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.018681 B = 0.006172 C = 0.005838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.452299 B = 4535.209001 C = 4794.959571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.180 3.820 3 H 0.006 0.994 4 C -0.535 4.535 5 H 0.088 0.912 6 C 0.081 3.919 7 N -0.874 5.874 8 Si 0.885 3.115 9 H -0.273 1.273 10 H -0.292 1.292 11 H -0.270 1.270 12 N -0.491 5.491 13 C 0.017 3.983 14 C 0.483 3.517 15 N -0.598 5.598 16 H 0.420 0.580 17 C 0.309 3.691 18 N -0.449 5.449 19 C 0.267 3.733 20 N -0.497 5.497 21 C 0.112 3.888 22 Cl -0.043 7.043 23 C -0.163 4.163 24 C -0.194 4.194 25 H 0.054 0.946 26 H 0.034 0.966 27 H 0.070 0.930 28 H 0.270 0.730 29 H 0.075 0.925 30 H 0.093 0.907 31 H 0.029 0.971 32 H 0.210 0.790 33 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.273 6.663 -10.835 12.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.076 3.924 3 H 0.023 0.977 4 C -0.572 4.572 5 H 0.106 0.894 6 C -0.124 4.124 7 N -0.509 5.509 8 Si 0.715 3.285 9 H -0.199 1.199 10 H -0.219 1.219 11 H -0.195 1.195 12 N -0.214 5.214 13 C -0.129 4.129 14 C 0.265 3.735 15 N -0.207 5.207 16 H 0.258 0.742 17 C 0.017 3.983 18 N -0.163 5.163 19 C 0.012 3.988 20 N -0.216 5.216 21 C -0.042 4.042 22 Cl -0.015 7.015 23 C -0.188 4.188 24 C -0.209 4.209 25 H 0.072 0.928 26 H 0.053 0.947 27 H 0.089 0.911 28 H 0.081 0.919 29 H 0.094 0.906 30 H 0.111 0.889 31 H 0.048 0.952 32 H 0.226 0.774 33 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 0.402 5.339 -10.670 11.938 hybrid contribution -2.305 2.038 0.587 3.133 sum -1.904 7.377 -10.083 12.637 Atomic orbital electron populations 1.22226 0.96581 1.02226 0.99547 1.20053 0.93361 0.92068 0.86938 0.97669 1.20912 1.33743 1.14949 0.87628 0.89385 1.24925 0.95349 0.96582 0.95591 1.69873 1.43479 1.39337 0.98206 0.86918 0.81120 0.83132 0.77373 1.19939 1.21872 1.19513 1.59466 1.02650 1.54096 1.05215 1.22606 1.03115 0.96069 0.91063 1.19527 0.86564 0.86002 0.81376 1.44148 1.08942 1.11756 1.55850 0.74163 1.24690 0.79554 0.97506 0.96548 1.67435 1.36958 0.96134 1.15795 1.19316 0.86757 0.90522 1.02203 1.69145 1.30505 0.99260 1.22673 1.20981 0.90808 0.85474 1.06955 1.98299 1.98664 1.08524 1.96020 1.20875 0.98364 0.89621 1.09920 1.19229 0.95555 0.92132 1.13934 0.92787 0.94665 0.91115 0.91922 0.90585 0.88886 0.95225 0.77351 0.84008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.60 8.28 37.16 0.31 -2.30 16 2 C 0.18 3.41 1.40 -68.87 -0.10 3.31 16 3 H 0.01 0.10 6.25 -51.93 -0.32 -0.22 16 4 C -0.53 -13.20 8.62 -34.44 -0.30 -13.50 16 5 H 0.09 2.57 7.37 -52.49 -0.39 2.18 16 6 C 0.08 2.09 5.45 -17.82 -0.10 1.99 16 7 N -0.87 -24.75 13.96 55.43 0.77 -23.97 16 8 Si 0.89 18.85 24.42 -169.99 -4.15 14.70 16 9 H -0.27 -5.73 6.82 56.52 0.39 -5.34 16 10 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 11 H -0.27 -5.20 6.53 56.52 0.37 -4.83 16 12 N -0.49 -8.20 4.58 -174.24 -0.80 -8.99 16 13 C 0.02 0.20 9.21 60.06 0.55 0.76 16 14 C 0.48 8.36 3.99 -153.74 -0.61 7.75 16 15 N -0.60 -8.07 5.01 -12.96 -0.06 -8.14 16 16 H 0.42 4.28 7.66 -40.82 -0.31 3.97 16 17 C 0.31 4.05 12.33 -89.87 -1.11 2.94 16 18 N -0.45 -8.21 10.48 -13.30 -0.14 -8.35 16 19 C 0.27 5.76 8.45 -156.88 -1.32 4.43 16 20 N -0.50 -11.48 11.21 -9.74 -0.11 -11.59 16 21 C 0.11 2.39 7.63 -17.68 -0.13 2.26 16 22 Cl -0.04 -0.79 29.29 -51.86 -1.52 -2.31 16 23 C -0.16 -3.37 10.95 -39.25 -0.43 -3.80 16 24 C -0.19 -3.97 6.08 -106.70 -0.65 -4.61 16 25 H 0.05 1.03 3.21 -51.92 -0.17 0.86 16 26 H 0.03 0.49 6.67 -51.93 -0.35 0.14 16 27 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 28 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 29 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.09 1.00 6.25 -51.93 -0.32 0.68 16 31 H 0.03 0.28 7.86 -51.93 -0.41 -0.12 16 32 H 0.21 1.48 8.06 -52.49 -0.42 1.06 16 33 H 0.14 2.73 8.06 -52.48 -0.42 2.31 16 LS Contribution 287.76 15.07 4.34 4.34 Total: -1.00 -33.59 287.76 -8.71 -42.30 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: -3.14 Total: 2.79 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: -3.89 Total: -0.77 kcal Atomic # 7 Polarization: -60.70 SS G_CDS: -0.34 Total: -61.04 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -4.15 Total: 14.70 kcal Atomic # 17 Polarization: -0.79 SS G_CDS: -1.52 Total: -2.31 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -33.59 -8.71 -42.30 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865575932.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.351 kcal (2) G-P(sol) polarization free energy of solvation -33.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds