Wall clock time and date at job start Tue Mar 31 2020 02:02:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46497 * 120.00218 * 2 1 4 4 C 1.50695 * 109.47314 * 275.00252 * 3 2 1 5 5 H 1.07998 * 119.99933 * 359.97438 * 4 3 2 6 6 C 1.37883 * 120.00149 * 180.02562 * 4 3 2 7 7 N 1.31509 * 119.99890 * 0.02562 * 6 4 3 8 8 Si 1.86796 * 119.99920 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.47600 * 90.00071 * 8 6 4 10 10 H 1.48501 * 109.47247 * 209.99928 * 8 6 4 11 11 H 1.48503 * 109.47169 * 329.99709 * 8 6 4 12 12 S 1.65610 * 120.00056 * 180.02562 * 2 1 3 13 13 O 1.42096 * 106.40358 * 156.45607 * 12 2 1 14 14 O 1.42102 * 106.39682 * 23.53529 * 12 2 1 15 15 N 1.65598 * 107.21574 * 269.99890 * 12 2 1 16 16 C 1.46502 * 120.00330 * 64.99453 * 15 12 2 17 17 C 1.53003 * 109.47413 * 164.99861 * 16 15 12 18 18 H 1.09002 * 110.78619 * 308.26369 * 17 16 15 19 19 C 1.54445 * 110.72954 * 185.00485 * 17 16 15 20 20 O 1.43895 * 105.08163 * 219.85312 * 19 17 16 21 21 C 1.43784 * 107.10278 * 358.29091 * 20 19 17 22 22 O 1.44379 * 106.17222 * 25.08648 * 21 20 19 23 23 H 1.09002 * 109.46779 * 269.99897 * 1 2 3 24 24 H 1.08999 * 109.46880 * 29.99763 * 1 2 3 25 25 H 1.08996 * 109.47070 * 150.00090 * 1 2 3 26 26 H 1.08995 * 109.47128 * 35.00451 * 3 2 1 27 27 H 1.09003 * 109.47246 * 155.00279 * 3 2 1 28 28 H 0.97002 * 120.00121 * 180.02562 * 7 6 4 29 29 H 0.97000 * 120.00241 * 245.00062 * 15 12 2 30 30 H 1.09007 * 109.46732 * 45.00155 * 16 15 12 31 31 H 1.08992 * 109.47276 * 285.00370 * 16 15 12 32 32 H 1.08998 * 110.32592 * 100.95143 * 19 17 16 33 33 H 1.09004 * 110.32274 * 338.75142 * 19 17 16 34 34 H 1.09000 * 110.10801 * 144.26421 * 21 20 19 35 35 H 1.08995 * 110.11109 * 265.90873 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3414 1.7657 -1.4153 5 1 1.9289 1.1935 -2.2331 6 6 3.0007 2.9504 -1.6664 7 7 3.5044 3.6463 -0.6707 8 14 3.1784 3.5667 -3.4207 9 1 2.0181 4.4281 -3.7628 10 1 4.4320 4.3530 -3.5446 11 1 3.2265 2.4091 -4.3497 12 16 2.2930 -1.4342 -0.0006 13 8 3.5759 -1.1567 -0.5450 14 8 1.4112 -2.4063 -0.5454 15 7 2.5381 -1.8594 1.5810 16 6 1.3947 -2.1788 2.4393 17 6 1.8876 -2.8864 3.7032 18 1 2.5294 -3.7300 3.4488 19 6 0.6963 -3.3481 4.5710 20 8 1.0987 -3.0880 5.9279 21 6 2.4339 -2.5569 5.8786 22 8 2.5808 -1.9586 4.5728 23 1 -0.3633 0.0000 1.0277 24 1 -0.3633 0.8900 -0.5138 25 1 -0.3633 -0.8900 -0.5138 26 1 1.6502 2.0042 0.5895 27 1 3.1858 1.1176 0.4343 28 1 3.9678 4.4800 -0.8472 29 1 3.4388 -1.8968 1.9392 30 1 0.7079 -2.8324 1.9013 31 1 0.8795 -1.2589 2.7155 32 1 0.5140 -4.4132 4.4279 33 1 -0.1967 -2.7739 4.3244 34 1 2.5658 -1.8021 6.6538 35 1 3.1611 -3.3586 6.0076 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867398129.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:02:51 Heat of formation + Delta-G solvation = -190.518369 kcal Electronic energy + Delta-G solvation = -20802.982859 eV Core-core repulsion = 17348.143393 eV Total energy + Delta-G solvation = -3454.839465 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.097 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.32000 -38.30142 -37.22425 -36.85692 -36.78118 -35.60167 -34.50149 -31.57230 -29.66603 -26.88094 -26.64993 -25.54988 -24.21510 -22.95623 -20.39396 -19.00016 -18.49284 -18.41084 -18.30182 -17.61296 -17.14999 -17.01642 -16.53590 -16.06793 -15.80701 -15.11823 -14.95271 -14.51872 -14.42693 -14.07534 -13.88043 -13.63336 -13.47822 -13.32633 -13.30009 -13.12233 -13.03888 -12.91301 -12.46697 -12.38923 -12.23670 -11.96208 -11.74913 -11.31895 -10.69227 -10.62433 -10.55099 -9.78398 -8.20343 -6.32601 -0.32801 1.39279 1.41742 1.52355 2.00655 2.40217 2.48186 2.64856 3.08245 3.10631 3.33139 3.58378 3.66385 3.91653 4.06761 4.12460 4.35682 4.42134 4.51531 4.55829 4.71893 4.75197 4.83133 4.89802 5.01971 5.09818 5.20549 5.46182 5.69859 5.84272 5.91485 6.06371 6.12108 6.76173 7.36506 8.87347 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.028760 B = 0.004569 C = 0.004314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.325529 B = 6126.133344 C = 6488.775317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -1.003 6.003 3 C 0.272 3.728 4 C -0.550 4.550 5 H 0.053 0.947 6 C 0.011 3.989 7 N -0.925 5.925 8 Si 0.958 3.042 9 H -0.265 1.265 10 H -0.279 1.279 11 H -0.274 1.274 12 S 2.802 3.198 13 O -1.011 7.011 14 O -1.003 7.003 15 N -1.120 6.120 16 C 0.119 3.881 17 C 0.039 3.961 18 H 0.109 0.891 19 C 0.028 3.972 20 O -0.408 6.408 21 C 0.197 3.803 22 O -0.395 6.395 23 H 0.074 0.926 24 H 0.069 0.931 25 H 0.079 0.921 26 H 0.027 0.973 27 H 0.014 0.986 28 H 0.267 0.733 29 H 0.422 0.578 30 H 0.113 0.887 31 H 0.079 0.921 32 H 0.114 0.886 33 H 0.098 0.902 34 H 0.121 0.879 35 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.398 -13.888 12.076 19.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.845 5.845 3 C 0.148 3.852 4 C -0.589 4.589 5 H 0.072 0.928 6 C -0.188 4.188 7 N -0.565 5.565 8 Si 0.783 3.217 9 H -0.190 1.190 10 H -0.204 1.204 11 H -0.198 1.198 12 S 2.809 3.191 13 O -0.995 6.995 14 O -0.987 6.987 15 N -0.882 5.882 16 C -0.007 4.007 17 C -0.020 4.020 18 H 0.127 0.873 19 C -0.049 4.049 20 O -0.329 6.329 21 C 0.083 3.917 22 O -0.316 6.316 23 H 0.092 0.908 24 H 0.088 0.912 25 H 0.098 0.902 26 H 0.045 0.955 27 H 0.032 0.968 28 H 0.076 0.924 29 H 0.256 0.744 30 H 0.131 0.869 31 H 0.097 0.903 32 H 0.132 0.868 33 H 0.116 0.884 34 H 0.139 0.861 35 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -6.249 -14.039 11.406 19.138 hybrid contribution 0.794 0.803 -0.427 1.207 sum -5.455 -13.236 10.980 18.042 Atomic orbital electron populations 1.21633 0.77966 1.03788 1.02584 1.57472 1.15835 1.21911 1.89300 1.18584 0.90356 0.80353 0.95863 1.21852 1.36223 1.06660 0.94178 0.92848 1.25767 0.94752 0.96790 1.01521 1.70015 1.37877 1.15750 1.32889 0.85557 0.78109 0.78314 0.79740 1.18993 1.20444 1.19837 1.01121 0.72072 0.72474 0.73390 1.93579 1.43066 1.85416 1.77466 1.93505 1.67524 1.59991 1.77638 1.55778 1.15814 1.85741 1.30898 1.21546 0.87961 1.01377 0.89821 1.24182 0.94133 0.92546 0.91145 0.87319 1.24136 0.97430 1.03803 0.79546 1.88850 1.32401 1.84716 1.26931 1.25046 0.84048 0.96329 0.86243 1.89525 1.76056 1.47274 1.18755 0.90802 0.91244 0.90209 0.95472 0.96774 0.92378 0.74360 0.86864 0.90307 0.86787 0.88378 0.86149 0.89922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.71 10.68 127.77 1.36 4.08 16 2 N -1.00 -40.71 3.23 -543.26 -1.75 -42.46 16 3 C 0.27 13.93 5.08 85.63 0.43 14.36 16 4 C -0.55 -31.39 9.38 25.60 0.24 -31.15 16 5 H 0.05 3.04 7.81 -2.91 -0.02 3.02 16 6 C 0.01 0.63 5.46 84.66 0.46 1.10 16 7 N -0.93 -54.92 13.29 21.45 0.28 -54.64 16 8 Si 0.96 44.91 29.54 68.60 2.03 46.93 16 9 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 10 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 11 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 12 S 2.80 107.02 6.10 -56.49 -0.34 106.68 16 13 O -1.01 -48.85 17.11 -128.00 -2.19 -51.04 16 14 O -1.00 -38.45 16.21 -128.00 -2.07 -40.53 16 15 N -1.12 -31.27 6.05 -187.48 -1.14 -32.40 16 16 C 0.12 2.47 5.87 86.38 0.51 2.98 16 17 C 0.04 0.67 3.48 31.09 0.11 0.78 16 18 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 19 C 0.03 0.39 7.66 72.47 0.56 0.94 16 20 O -0.41 -7.55 11.59 -125.98 -1.46 -9.01 16 21 C 0.20 3.27 8.57 113.37 0.97 4.24 16 22 O -0.40 -8.73 11.55 -125.98 -1.46 -10.18 16 23 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 24 H 0.07 2.32 8.07 -2.39 -0.02 2.30 16 25 H 0.08 2.31 7.02 -2.39 -0.02 2.29 16 26 H 0.03 1.41 8.11 -2.39 -0.02 1.40 16 27 H 0.01 0.79 7.61 -2.39 -0.02 0.77 16 28 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 29 H 0.42 11.12 8.65 -96.75 -0.84 10.28 16 30 H 0.11 1.93 7.75 -2.38 -0.02 1.91 16 31 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.10 1.19 7.85 -2.38 -0.02 1.17 16 34 H 0.12 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -75.34 312.20 -3.19 -78.53 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: 0.26 Total: 10.80 kcal Atomic # 6 Polarization: -7.32 SS G_CDS: 4.64 Total: -2.68 kcal Atomic # 7 Polarization: -126.90 SS G_CDS: -2.60 Total: -129.50 kcal Atomic # 8 Polarization: -103.58 SS G_CDS: -7.18 Total: -110.76 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.93 kcal Atomic # 16 Polarization: 107.02 SS G_CDS: -0.34 Total: 106.68 kcal Total: -75.34 -3.19 -78.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867398129.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.988 kcal (2) G-P(sol) polarization free energy of solvation -75.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds