Wall clock time and date at job start Tue Mar 31 2020 01:47:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09004 * 110.06169 * 2 1 4 4 C 1.54268 * 110.03219 * 121.41411 * 2 1 3 5 5 C 1.54893 * 104.19715 * 142.89329 * 4 2 1 6 6 C 1.54887 * 102.74952 * 322.06199 * 5 4 2 7 7 H 1.09005 * 110.59685 * 279.20754 * 6 5 4 8 8 O 1.42901 * 110.48536 * 156.61961 * 6 5 4 9 9 C 1.35004 * 116.99840 * 95.22536 * 8 6 5 10 10 O 1.21687 * 119.99946 * 359.97438 * 9 8 6 11 11 C 1.41753 * 119.99864 * 179.97438 * 9 8 6 12 12 S 1.75833 * 125.45521 * 0.32709 * 11 9 8 13 13 C 1.75657 * 91.48871 * 180.02562 * 12 11 9 14 14 C 1.32868 * 110.86963 * 359.65250 * 13 12 11 15 15 C 1.39681 * 115.27268 * 0.26378 * 14 13 12 16 16 C 1.40509 * 123.35515 * 180.02562 * 15 14 13 17 17 H 1.08008 * 119.99440 * 154.70376 * 16 15 14 18 18 C 1.40332 * 120.00362 * 334.70334 * 16 15 14 19 19 N 1.30617 * 120.00171 * 350.00551 * 18 16 15 20 20 Si 1.86801 * 120.00002 * 170.00562 * 18 16 15 21 21 H 1.48496 * 109.47370 * 89.99842 * 20 18 16 22 22 H 1.48505 * 109.47328 * 209.99872 * 20 18 16 23 23 H 1.48502 * 109.47320 * 329.99937 * 20 18 16 24 24 C 1.53878 * 110.03661 * 238.58058 * 2 1 3 25 25 H 1.09004 * 109.47133 * 181.41688 * 1 2 3 26 26 H 1.09000 * 109.47312 * 301.42138 * 1 2 3 27 27 H 1.09003 * 109.46880 * 61.41933 * 1 2 3 28 28 H 1.09001 * 110.48587 * 261.57452 * 4 2 1 29 29 H 1.09001 * 110.48487 * 24.21773 * 4 2 1 30 30 H 1.08994 * 110.75746 * 203.74043 * 5 4 2 31 31 H 1.09001 * 110.75232 * 80.37414 * 5 4 2 32 32 H 1.08003 * 124.56529 * 179.91396 * 13 12 11 33 33 H 1.08000 * 122.36258 * 180.28515 * 14 13 12 34 34 H 0.97002 * 119.99940 * 180.02562 * 19 18 16 35 35 H 1.08994 * 110.03470 * 121.42951 * 24 2 1 36 36 H 1.08999 * 110.02978 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0584 -0.7554 1.2369 5 6 3.3136 -1.5008 0.7192 6 6 2.8875 -1.9407 -0.7034 7 1 2.2777 -2.8432 -0.6592 8 8 4.0363 -2.1545 -1.5259 9 6 4.4973 -3.4201 -1.6179 10 8 3.9377 -4.3167 -1.0148 11 6 5.6330 -3.7043 -2.4170 12 16 6.5530 -2.5231 -3.3390 13 6 7.6494 -3.7649 -3.9232 14 6 7.3197 -4.9556 -3.4342 15 6 6.2050 -4.9667 -2.5925 16 6 5.7089 -6.1313 -1.9827 17 1 5.1442 -6.0616 -1.0647 18 6 5.9472 -7.3850 -2.5665 19 7 6.4554 -7.4604 -3.7674 20 14 5.5376 -8.9462 -1.6261 21 1 4.1399 -9.3507 -1.9230 22 1 6.4648 -10.0304 -2.0386 23 1 5.6823 -8.6989 -0.1690 24 6 2.0571 -0.7536 -1.2337 25 1 -0.3633 -1.0274 0.0254 26 1 -0.3634 0.5357 0.8769 27 1 -0.3633 0.4917 -0.9025 28 1 2.3296 -0.0535 2.0255 29 1 1.3142 -1.4659 1.5967 30 1 3.5325 -2.3678 1.3424 31 1 4.1709 -0.8291 0.6752 32 1 8.4821 -3.5843 -4.5868 33 1 7.8746 -5.8514 -3.6705 34 1 6.6198 -8.3270 -4.1710 35 1 2.6867 -0.0955 -1.8324 36 1 1.2230 -1.1190 -1.8326 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870043351.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:47:56 Heat of formation + Delta-G solvation = -88.486363 kcal Electronic energy + Delta-G solvation = -19480.236509 eV Core-core repulsion = 16440.670746 eV Total energy + Delta-G solvation = -3039.565762 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.092 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.50903 -37.73374 -36.52240 -34.66675 -33.24515 -30.65231 -29.20035 -28.34922 -26.67688 -24.65796 -22.78129 -21.05710 -20.10873 -19.41131 -18.81705 -17.71369 -16.48353 -15.62853 -15.39449 -14.98226 -14.76367 -14.35218 -13.87207 -13.39800 -13.27348 -13.08746 -12.54815 -12.25774 -12.14783 -11.89462 -11.62554 -11.38964 -11.37832 -11.17127 -10.95887 -10.79667 -10.68126 -10.48704 -10.45830 -10.32345 -10.14719 -9.70206 -9.46063 -9.27646 -8.78185 -7.54984 -7.24107 -7.16948 -4.67650 1.93283 2.89478 2.92662 3.00427 3.15600 3.60693 3.72647 3.78066 3.97161 4.23676 4.72915 4.74203 4.91718 5.15686 5.39962 5.46804 5.58262 5.64785 5.67256 5.80444 5.87872 5.95655 6.04146 6.06671 6.13707 6.18118 6.39017 6.42620 6.50343 6.70463 6.94285 7.03893 7.17536 7.48360 7.57358 7.81652 8.23848 8.43600 8.56132 9.39157 9.71732 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.019541 B = 0.005162 C = 0.004290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.538799 B = 5422.814059 C = 6524.991113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.094 4.094 3 H 0.073 0.927 4 C -0.117 4.117 5 C -0.140 4.140 6 C 0.087 3.913 7 H 0.082 0.918 8 O -0.360 6.360 9 C 0.533 3.467 10 O -0.550 6.550 11 C -0.412 4.412 12 S -0.014 6.014 13 C -0.201 4.201 14 C -0.109 4.109 15 C 0.141 3.859 16 C -0.364 4.364 17 H 0.113 0.887 18 C 0.065 3.935 19 N -0.766 5.766 20 Si 0.928 3.072 21 H -0.263 1.263 22 H -0.272 1.272 23 H -0.254 1.254 24 C -0.118 4.118 25 H 0.056 0.944 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.140 0.860 33 H 0.144 0.856 34 H 0.291 0.709 35 H 0.076 0.924 36 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.258 6.751 3.767 8.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.112 4.112 3 H 0.091 0.909 4 C -0.155 4.155 5 C -0.178 4.178 6 C 0.031 3.969 7 H 0.100 0.900 8 O -0.279 6.279 9 C 0.389 3.611 10 O -0.447 6.447 11 C -0.528 4.528 12 S 0.243 5.757 13 C -0.336 4.336 14 C -0.141 4.141 15 C 0.130 3.870 16 C -0.394 4.394 17 H 0.131 0.869 18 C -0.158 4.158 19 N -0.390 5.390 20 Si 0.751 3.249 21 H -0.187 1.187 22 H -0.197 1.197 23 H -0.177 1.177 24 C -0.156 4.156 25 H 0.075 0.925 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.158 0.842 33 H 0.162 0.838 34 H 0.103 0.897 35 H 0.094 0.906 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.474 7.924 3.531 9.761 hybrid contribution -0.033 -2.210 0.364 2.240 sum -4.507 5.715 3.895 8.255 Atomic orbital electron populations 1.21898 0.95081 1.01864 1.01342 1.21678 0.95484 0.99356 0.94732 0.90893 1.22361 0.97288 0.98846 0.96977 1.22893 0.98073 1.00461 0.96354 1.22854 0.86768 0.98122 0.89202 0.90001 1.86274 1.44149 1.32587 1.64917 1.18286 0.83246 0.79375 0.80160 1.90690 1.59950 1.45785 1.48281 1.21029 1.09459 0.96915 1.25409 1.83217 1.28800 1.12789 1.50915 1.25261 1.04062 0.97315 1.06954 1.20587 0.98045 0.97124 0.98366 1.16926 0.89571 0.91307 0.89179 1.20194 1.23229 0.88880 1.07103 0.86937 1.26448 0.92192 1.02473 0.94716 1.69668 1.27967 1.28789 1.12533 0.85947 0.79535 0.78303 0.81109 1.18722 1.19709 1.17720 1.22298 0.98957 0.96801 0.97553 0.92506 0.92852 0.92744 0.91627 0.91420 0.91142 0.90782 0.84234 0.83846 0.89740 0.90574 0.91294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 8.85 37.15 0.33 -1.13 16 2 C -0.09 -1.12 3.50 -89.50 -0.31 -1.43 16 3 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 4 C -0.12 -1.45 6.36 -25.07 -0.16 -1.61 16 5 C -0.14 -2.24 6.62 -24.74 -0.16 -2.41 16 6 C 0.09 1.61 3.17 -25.07 -0.08 1.53 16 7 H 0.08 1.64 7.10 -51.93 -0.37 1.27 16 8 O -0.36 -8.18 9.58 -41.33 -0.40 -8.57 16 9 C 0.53 13.87 7.72 32.07 0.25 14.12 16 10 O -0.55 -15.17 13.55 -19.41 -0.26 -15.43 16 11 C -0.41 -10.88 6.36 -37.70 -0.24 -11.12 16 12 S -0.01 -0.31 23.02 -107.50 -2.47 -2.78 16 13 C -0.20 -4.42 11.11 28.88 0.32 -4.10 16 14 C -0.11 -2.64 8.81 -40.89 -0.36 -3.00 16 15 C 0.14 3.78 5.53 -107.96 -0.60 3.18 16 16 C -0.36 -9.66 8.41 -37.94 -0.32 -9.98 16 17 H 0.11 3.12 6.06 -52.48 -0.32 2.80 16 18 C 0.06 1.54 5.37 -17.28 -0.09 1.45 16 19 N -0.77 -18.05 10.87 55.57 0.60 -17.44 16 20 Si 0.93 17.97 29.57 -169.99 -5.03 12.94 16 21 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 22 H -0.27 -4.95 7.11 56.52 0.40 -4.55 16 23 H -0.25 -4.96 7.11 56.52 0.40 -4.55 16 24 C -0.12 -1.75 6.22 -25.61 -0.16 -1.91 16 25 H 0.06 0.59 8.12 -51.93 -0.42 0.17 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.07 0.81 7.84 -51.93 -0.41 0.40 16 30 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.14 2.56 8.06 -52.48 -0.42 2.13 16 33 H 0.14 3.42 6.38 -52.49 -0.33 3.08 16 34 H 0.29 6.09 8.29 -40.82 -0.34 5.75 16 35 H 0.08 1.15 8.07 -51.93 -0.42 0.73 16 36 H 0.07 0.96 7.67 -51.93 -0.40 0.56 16 LS Contribution 312.37 15.07 4.71 4.71 Total: -1.00 -28.37 312.37 -9.20 -37.57 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -4.76 Total: 5.42 kcal Atomic # 6 Polarization: -14.82 SS G_CDS: -1.59 Total: -16.40 kcal Atomic # 7 Polarization: -18.05 SS G_CDS: 0.60 Total: -17.44 kcal Atomic # 8 Polarization: -23.34 SS G_CDS: -0.66 Total: -24.00 kcal Atomic # 14 Polarization: 17.97 SS G_CDS: -5.03 Total: 12.94 kcal Atomic # 16 Polarization: -0.31 SS G_CDS: -2.47 Total: -2.78 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -28.37 -9.20 -37.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870043351.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.921 kcal (2) G-P(sol) polarization free energy of solvation -28.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds