Wall clock time and date at job start Tue Mar 31 2020 01:47:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09004 * 110.06169 * 2 1 4 4 C 1.54268 * 110.03219 * 121.41411 * 2 1 3 5 5 C 1.54893 * 104.19715 * 142.89329 * 4 2 1 6 6 C 1.54887 * 102.74952 * 322.06199 * 5 4 2 7 7 H 1.09005 * 110.59685 * 279.20754 * 6 5 4 8 8 O 1.42901 * 110.48536 * 156.61961 * 6 5 4 9 9 C 1.35004 * 116.99840 * 95.22536 * 8 6 5 10 10 O 1.21687 * 119.99946 * 359.97438 * 9 8 6 11 11 C 1.41753 * 119.99864 * 179.97438 * 9 8 6 12 12 S 1.75833 * 125.45521 * 0.32709 * 11 9 8 13 13 C 1.75657 * 91.48871 * 180.02562 * 12 11 9 14 14 C 1.32868 * 110.86963 * 359.65250 * 13 12 11 15 15 C 1.39681 * 115.27268 * 0.26378 * 14 13 12 16 16 C 1.40509 * 123.35515 * 180.02562 * 15 14 13 17 17 H 1.08008 * 119.99440 * 154.70376 * 16 15 14 18 18 C 1.40332 * 120.00362 * 334.70334 * 16 15 14 19 19 N 1.30617 * 120.00171 * 350.00551 * 18 16 15 20 20 Si 1.86801 * 120.00002 * 170.00562 * 18 16 15 21 21 H 1.48496 * 109.47370 * 89.99842 * 20 18 16 22 22 H 1.48505 * 109.47328 * 209.99872 * 20 18 16 23 23 H 1.48502 * 109.47320 * 329.99937 * 20 18 16 24 24 C 1.53878 * 110.03661 * 238.58058 * 2 1 3 25 25 H 1.09004 * 109.47133 * 181.41688 * 1 2 3 26 26 H 1.09000 * 109.47312 * 301.42138 * 1 2 3 27 27 H 1.09003 * 109.46880 * 61.41933 * 1 2 3 28 28 H 1.09001 * 110.48587 * 261.57452 * 4 2 1 29 29 H 1.09001 * 110.48487 * 24.21773 * 4 2 1 30 30 H 1.08994 * 110.75746 * 203.74043 * 5 4 2 31 31 H 1.09001 * 110.75232 * 80.37414 * 5 4 2 32 32 H 1.08003 * 124.56529 * 179.91396 * 13 12 11 33 33 H 1.08000 * 122.36258 * 180.28515 * 14 13 12 34 34 H 0.97002 * 119.99940 * 180.02562 * 19 18 16 35 35 H 1.08994 * 110.03470 * 121.42951 * 24 2 1 36 36 H 1.08999 * 110.02978 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0584 -0.7554 1.2369 5 6 3.3136 -1.5008 0.7192 6 6 2.8875 -1.9407 -0.7034 7 1 2.2777 -2.8432 -0.6592 8 8 4.0363 -2.1545 -1.5259 9 6 4.4973 -3.4201 -1.6179 10 8 3.9377 -4.3167 -1.0148 11 6 5.6330 -3.7043 -2.4170 12 16 6.5530 -2.5231 -3.3390 13 6 7.6494 -3.7649 -3.9232 14 6 7.3197 -4.9556 -3.4342 15 6 6.2050 -4.9667 -2.5925 16 6 5.7089 -6.1313 -1.9827 17 1 5.1442 -6.0616 -1.0647 18 6 5.9472 -7.3850 -2.5665 19 7 6.4554 -7.4604 -3.7674 20 14 5.5376 -8.9462 -1.6261 21 1 4.1399 -9.3507 -1.9230 22 1 6.4648 -10.0304 -2.0386 23 1 5.6823 -8.6989 -0.1690 24 6 2.0571 -0.7536 -1.2337 25 1 -0.3633 -1.0274 0.0254 26 1 -0.3634 0.5357 0.8769 27 1 -0.3633 0.4917 -0.9025 28 1 2.3296 -0.0535 2.0255 29 1 1.3142 -1.4659 1.5967 30 1 3.5325 -2.3678 1.3424 31 1 4.1709 -0.8291 0.6752 32 1 8.4821 -3.5843 -4.5868 33 1 7.8746 -5.8514 -3.6705 34 1 6.6198 -8.3270 -4.1710 35 1 2.6867 -0.0955 -1.8324 36 1 1.2230 -1.1190 -1.8326 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870043351.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:47:56 Heat of formation + Delta-G solvation = -102.203906 kcal Electronic energy + Delta-G solvation = -19480.831346 eV Core-core repulsion = 16440.670746 eV Total energy + Delta-G solvation = -3040.160600 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.092 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.23301 -39.25435 -38.25035 -36.48756 -35.10786 -31.83341 -31.00320 -29.70580 -28.47976 -25.79721 -24.57736 -22.77001 -21.54644 -20.70147 -20.57561 -19.55316 -18.32058 -17.38350 -17.00200 -16.65798 -16.20620 -15.85663 -15.56850 -14.86385 -14.43996 -14.29257 -14.23133 -13.93331 -13.75831 -13.39537 -13.15261 -13.01587 -12.89640 -12.74620 -12.57262 -12.23186 -12.05223 -11.88642 -11.71419 -11.63316 -11.47951 -11.35166 -11.15464 -11.04952 -10.76034 -9.45656 -9.11578 -8.98985 -6.63647 0.04885 1.30555 1.32548 1.34856 1.47145 1.74097 1.87952 2.12390 2.28878 2.32276 3.19335 3.55570 3.58350 3.86652 4.20174 4.31732 4.38076 4.43617 4.46361 4.61374 4.66853 4.79547 4.86628 4.90116 4.95555 5.06246 5.08323 5.11802 5.23145 5.27021 5.30684 5.34632 5.52141 5.57098 5.72803 5.90634 6.29069 6.46303 6.62236 7.44144 7.93516 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.019541 B = 0.005162 C = 0.004290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.538799 B = 5422.814059 C = 6524.991113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.087 4.087 3 H 0.091 0.909 4 C -0.108 4.108 5 C -0.139 4.139 6 C 0.070 3.930 7 H 0.058 0.942 8 O -0.364 6.364 9 C 0.525 3.475 10 O -0.582 6.582 11 C -0.458 4.458 12 S 0.016 5.984 13 C -0.178 4.178 14 C -0.134 4.134 15 C 0.116 3.884 16 C -0.394 4.394 17 H 0.088 0.912 18 C 0.034 3.966 19 N -0.775 5.775 20 Si 0.995 3.005 21 H -0.263 1.263 22 H -0.243 1.243 23 H -0.262 1.262 24 C -0.113 4.113 25 H 0.049 0.951 26 H 0.072 0.928 27 H 0.062 0.938 28 H 0.091 0.909 29 H 0.072 0.928 30 H 0.051 0.949 31 H 0.072 0.928 32 H 0.183 0.817 33 H 0.146 0.854 34 H 0.307 0.693 35 H 0.073 0.927 36 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.275 7.359 3.590 9.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.105 4.105 3 H 0.109 0.891 4 C -0.145 4.145 5 C -0.177 4.177 6 C 0.014 3.986 7 H 0.076 0.924 8 O -0.283 6.283 9 C 0.383 3.617 10 O -0.482 6.482 11 C -0.573 4.573 12 S 0.272 5.728 13 C -0.313 4.313 14 C -0.167 4.167 15 C 0.105 3.895 16 C -0.424 4.424 17 H 0.106 0.894 18 C -0.188 4.188 19 N -0.399 5.399 20 Si 0.813 3.187 21 H -0.188 1.188 22 H -0.166 1.166 23 H -0.186 1.186 24 C -0.150 4.150 25 H 0.068 0.932 26 H 0.091 0.909 27 H 0.081 0.919 28 H 0.109 0.891 29 H 0.090 0.910 30 H 0.070 0.930 31 H 0.091 0.909 32 H 0.200 0.800 33 H 0.163 0.837 34 H 0.119 0.881 35 H 0.092 0.908 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.482 8.567 3.329 10.225 hybrid contribution -0.013 -2.363 0.361 2.390 sum -4.495 6.204 3.690 8.503 Atomic orbital electron populations 1.21879 0.93350 1.01905 1.02769 1.21689 0.96852 0.99499 0.92497 0.89101 1.22363 0.95248 0.99037 0.97857 1.22877 1.00089 1.00165 0.94585 1.23309 0.85772 0.98813 0.90736 0.92420 1.86227 1.45577 1.30725 1.65727 1.18451 0.83325 0.80004 0.79946 1.90644 1.61038 1.46860 1.49612 1.21458 1.10608 0.98427 1.26843 1.82921 1.28097 1.11785 1.49988 1.25731 1.04014 0.96026 1.05526 1.20540 0.98093 0.98257 0.99760 1.17375 0.90500 0.91676 0.89936 1.20260 1.24307 0.90776 1.07050 0.89399 1.27171 0.91775 1.04411 0.95475 1.69623 1.26712 1.30654 1.12893 0.85010 0.79700 0.74866 0.79115 1.18767 1.16614 1.18616 1.22339 0.98328 0.95264 0.99108 0.93230 0.90888 0.91869 0.89061 0.90953 0.93040 0.90894 0.79950 0.83662 0.88066 0.90820 0.90827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 8.85 71.98 0.64 -1.84 16 2 C -0.09 -1.88 3.50 -10.07 -0.04 -1.91 16 3 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 4 C -0.11 -2.49 6.36 31.67 0.20 -2.29 16 5 C -0.14 -4.56 6.62 31.89 0.21 -4.34 16 6 C 0.07 2.67 3.17 31.67 0.10 2.77 16 7 H 0.06 2.47 7.10 -2.38 -0.02 2.46 16 8 O -0.36 -17.23 9.58 -59.23 -0.57 -17.80 16 9 C 0.52 28.80 7.72 68.69 0.53 29.33 16 10 O -0.58 -34.28 13.55 19.22 0.26 -34.02 16 11 C -0.46 -25.04 6.36 23.49 0.15 -24.89 16 12 S 0.02 0.72 23.02 -56.49 -1.30 -0.58 16 13 C -0.18 -7.56 11.11 66.64 0.74 -6.82 16 14 C -0.13 -6.54 8.81 21.44 0.19 -6.35 16 15 C 0.12 6.42 5.53 -22.03 -0.12 6.30 16 16 C -0.39 -21.82 8.41 23.33 0.20 -21.63 16 17 H 0.09 5.20 6.06 -2.91 -0.02 5.18 16 18 C 0.03 1.62 5.37 85.38 0.46 2.08 16 19 N -0.78 -36.19 10.87 21.89 0.24 -35.96 16 20 Si 0.99 36.71 29.57 68.60 2.03 38.74 16 21 H -0.26 -9.68 7.11 99.48 0.71 -8.98 16 22 H -0.24 -7.81 7.11 99.48 0.71 -7.10 16 23 H -0.26 -9.95 7.11 99.48 0.71 -9.25 16 24 C -0.11 -3.28 6.22 31.32 0.19 -3.08 16 25 H 0.05 0.94 8.12 -2.38 -0.02 0.92 16 26 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.07 1.62 7.84 -2.39 -0.02 1.60 16 30 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 32 H 0.18 6.03 8.06 -2.91 -0.02 6.01 16 33 H 0.15 6.90 6.38 -2.91 -0.02 6.88 16 34 H 0.31 12.40 8.29 -92.71 -0.77 11.63 16 35 H 0.07 2.17 8.07 -2.39 -0.02 2.15 16 36 H 0.07 2.04 7.67 -2.39 -0.02 2.02 16 Total: -1.00 -64.45 312.37 5.19 -59.26 By element: Atomic # 1 Polarization: 21.94 SS G_CDS: 1.08 Total: 23.03 kcal Atomic # 6 Polarization: -36.12 SS G_CDS: 3.45 Total: -32.67 kcal Atomic # 7 Polarization: -36.19 SS G_CDS: 0.24 Total: -35.96 kcal Atomic # 8 Polarization: -51.51 SS G_CDS: -0.31 Total: -51.82 kcal Atomic # 14 Polarization: 36.71 SS G_CDS: 2.03 Total: 38.74 kcal Atomic # 16 Polarization: 0.72 SS G_CDS: -1.30 Total: -0.58 kcal Total: -64.45 5.19 -59.26 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870043351.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.943 kcal (2) G-P(sol) polarization free energy of solvation -64.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds