Wall clock time and date at job start Tue Mar 31 2020 01:17:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30622 * 1 3 3 Si 1.86797 * 119.99796 * 2 1 4 4 H 1.48491 * 109.47483 * 239.99932 * 3 2 1 5 5 H 1.48506 * 109.47125 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46954 * 120.00005 * 3 2 1 7 7 C 1.40332 * 120.00013 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99919 * 169.95954 * 7 2 1 9 9 C 1.40506 * 120.00221 * 349.95768 * 7 2 1 10 10 C 1.39673 * 123.36293 * 334.82667 * 9 7 2 11 11 C 1.32868 * 115.28088 * 180.29619 * 10 9 7 12 12 S 1.75655 * 110.86641 * 359.72673 * 11 10 9 13 13 C 1.39700 * 123.36447 * 154.61149 * 9 7 2 14 14 C 1.41756 * 125.45412 * 359.97438 * 13 9 7 15 15 O 1.21690 * 120.00054 * 359.72706 * 14 13 9 16 16 O 1.34996 * 119.99945 * 179.72360 * 14 13 9 17 17 C 1.42910 * 116.99958 * 180.02562 * 16 14 13 18 18 C 1.53006 * 109.46837 * 179.97438 * 17 16 14 19 19 C 1.53000 * 109.46616 * 179.97438 * 18 17 16 20 20 C 1.53777 * 113.61513 * 274.13660 * 19 18 17 21 21 C 1.53951 * 87.02101 * 220.05310 * 20 19 18 22 22 C 1.53779 * 113.61123 * 176.52693 * 19 18 17 23 23 H 0.97000 * 120.00061 * 0.02562 * 1 2 3 24 24 H 1.08007 * 122.36358 * 0.02562 * 10 9 7 25 25 H 1.07999 * 124.57164 * 179.76248 * 11 10 9 26 26 H 1.08995 * 109.46773 * 59.99829 * 17 16 14 27 27 H 1.08999 * 109.46711 * 299.99917 * 17 16 14 28 28 H 1.09000 * 109.47106 * 299.99888 * 18 17 16 29 29 H 1.08995 * 109.47030 * 60.00061 * 18 17 16 30 30 H 1.08997 * 112.85131 * 45.33660 * 19 18 17 31 31 H 1.09005 * 113.61270 * 334.56800 * 20 19 18 32 32 H 1.09000 * 113.61691 * 105.46914 * 20 19 18 33 33 H 1.09003 * 113.53697 * 270.81325 * 21 20 19 34 34 H 1.09002 * 113.67319 * 139.93300 * 21 20 19 35 35 H 1.08998 * 113.61869 * 254.52975 * 22 19 18 36 36 H 1.09007 * 113.61427 * 25.35185 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2401 1.6177 0.0000 4 1 3.0939 1.6965 -1.2124 5 1 1.2751 2.7465 0.0006 6 1 3.0939 1.6964 1.2125 7 6 2.0079 -1.2153 -0.0005 8 1 3.0756 -1.2224 -0.1636 9 6 1.3215 -2.4229 0.2111 10 6 0.1139 -2.5082 0.9077 11 6 -0.3922 -3.7317 1.0181 12 16 0.6396 -4.9098 0.2226 13 6 1.7766 -3.6577 -0.2579 14 6 2.9672 -3.8681 -0.9980 15 8 3.6846 -2.9257 -1.2773 16 8 3.3052 -5.1140 -1.3928 17 6 4.5188 -5.2526 -2.1346 18 6 4.7334 -6.7251 -2.4908 19 6 6.0324 -6.8733 -3.2855 20 6 5.8592 -6.6468 -4.7966 21 6 6.8312 -7.8228 -5.0028 22 6 6.3857 -8.3317 -3.6217 23 1 -0.4850 0.8400 -0.0004 24 1 -0.3719 -1.6413 1.3308 25 1 -1.3141 -3.9698 1.5278 26 1 5.3554 -4.8992 -1.5319 27 1 4.4550 -4.6628 -3.0490 28 1 4.7973 -7.3145 -1.5761 29 1 3.8969 -7.0788 -3.0933 30 1 6.8603 -6.3124 -2.8520 31 1 4.8495 -6.8470 -5.1553 32 1 6.2504 -5.6900 -5.1424 33 1 7.8779 -7.5210 -5.0401 34 1 6.5507 -8.4837 -5.8230 35 1 7.2013 -8.7332 -3.0204 36 1 5.5203 -8.9937 -3.6571 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870043689.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:17:08 Heat of formation + Delta-G solvation = -63.702936 kcal Electronic energy + Delta-G solvation = -18948.617872 eV Core-core repulsion = 15910.126799 eV Total energy + Delta-G solvation = -3038.491072 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.092 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.33737 -38.69329 -36.77426 -35.00604 -33.24494 -31.51116 -29.14331 -26.94462 -25.72743 -24.90432 -22.68550 -21.47193 -20.48684 -19.42056 -18.81309 -17.50482 -16.35310 -15.84158 -15.58828 -15.38085 -15.10742 -14.46860 -14.01263 -13.69506 -13.51242 -12.55406 -12.51213 -12.50126 -12.31738 -11.95306 -11.78034 -11.51635 -11.27231 -11.19800 -10.96752 -10.88170 -10.63679 -10.50412 -10.30099 -10.22781 -10.17985 -9.69096 -9.55301 -9.27900 -8.78752 -7.54941 -7.24154 -7.16863 -4.67770 1.93479 2.92065 2.93452 2.97094 3.15630 3.60708 3.73158 3.77970 3.91197 4.25135 4.55686 4.59430 4.73508 4.81217 5.15151 5.32008 5.50051 5.55006 5.63900 5.68738 5.76300 5.80021 5.87604 5.90905 6.05849 6.13373 6.23309 6.35128 6.49320 6.69889 6.88463 7.03291 7.16901 7.47611 7.55453 7.79854 8.23494 8.43302 8.55854 9.38251 9.71835 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.020436 B = 0.004252 C = 0.003607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.801162 B = 6583.273517 C = 7760.450130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.065 3.935 3 Si 0.929 3.071 4 H -0.257 1.257 5 H -0.274 1.274 6 H -0.257 1.257 7 C -0.364 4.364 8 H 0.112 0.888 9 C 0.142 3.858 10 C -0.109 4.109 11 C -0.201 4.201 12 S -0.013 6.013 13 C -0.413 4.413 14 C 0.533 3.467 15 O -0.551 6.551 16 O -0.371 6.371 17 C 0.075 3.925 18 C -0.107 4.107 19 C -0.108 4.108 20 C -0.140 4.140 21 C -0.143 4.143 22 C -0.135 4.135 23 H 0.292 0.708 24 H 0.144 0.856 25 H 0.140 0.860 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.066 0.934 33 H 0.077 0.923 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.588 -7.479 -3.631 10.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.390 5.390 2 C -0.158 4.158 3 Si 0.752 3.248 4 H -0.181 1.181 5 H -0.199 1.199 6 H -0.182 1.182 7 C -0.395 4.395 8 H 0.130 0.870 9 C 0.131 3.869 10 C -0.141 4.141 11 C -0.336 4.336 12 S 0.243 5.757 13 C -0.529 4.529 14 C 0.390 3.610 15 O -0.448 6.448 16 O -0.290 6.290 17 C -0.001 4.001 18 C -0.144 4.144 19 C -0.126 4.126 20 C -0.177 4.177 21 C -0.181 4.181 22 C -0.173 4.173 23 H 0.103 0.897 24 H 0.162 0.838 25 H 0.158 0.842 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.109 0.891 31 H 0.101 0.899 32 H 0.085 0.915 33 H 0.096 0.904 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 5.521 -8.653 -3.932 10.991 hybrid contribution 0.291 2.261 0.113 2.282 sum 5.812 -6.392 -3.818 9.445 Atomic orbital electron populations 1.69661 1.08169 1.30900 1.30231 1.26449 0.95023 1.02804 0.91550 0.85987 0.79982 0.77952 0.80916 1.18080 1.19889 1.18160 1.20168 0.97910 0.88959 1.32424 0.86983 1.16914 0.90267 0.91569 0.88190 1.20589 0.96707 0.96596 1.00242 1.25263 1.03717 0.97357 1.07249 1.83207 1.19103 1.12581 1.60793 1.21031 1.05896 0.96483 1.29488 1.18259 0.85161 0.79482 0.78131 1.90706 1.53579 1.42009 1.58487 1.86182 1.40980 1.33816 1.68025 1.22262 0.86161 0.96296 0.95336 1.21529 0.96953 0.95425 1.00534 1.22476 0.97735 0.97143 0.95290 1.23043 0.99977 0.98616 0.96069 1.22839 0.99436 0.98320 0.97477 1.22926 1.01196 0.96278 0.96863 0.89672 0.83814 0.84214 0.92811 0.92657 0.91075 0.91082 0.89132 0.89938 0.91489 0.90401 0.91651 0.91626 0.90007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.09 10.86 55.57 0.60 -17.48 16 2 C 0.07 1.55 5.37 -17.28 -0.09 1.45 16 3 Si 0.93 18.00 29.57 -169.99 -5.03 12.97 16 4 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 5 H -0.27 -4.99 7.11 56.52 0.40 -4.59 16 6 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 7 C -0.36 -9.72 8.40 -37.94 -0.32 -10.04 16 8 H 0.11 3.12 6.07 -52.48 -0.32 2.80 16 9 C 0.14 3.80 5.53 -107.96 -0.60 3.21 16 10 C -0.11 -2.65 8.81 -40.90 -0.36 -3.01 16 11 C -0.20 -4.42 11.11 28.88 0.32 -4.10 16 12 S -0.01 -0.30 23.02 -107.50 -2.47 -2.78 16 13 C -0.41 -10.98 6.36 -37.69 -0.24 -11.22 16 14 C 0.53 14.05 7.73 32.08 0.25 14.30 16 15 O -0.55 -15.40 14.11 -19.41 -0.27 -15.67 16 16 O -0.37 -8.49 9.87 -41.31 -0.41 -8.89 16 17 C 0.07 1.38 5.37 37.16 0.20 1.58 16 18 C -0.11 -1.51 5.41 -26.73 -0.14 -1.65 16 19 C -0.11 -1.24 3.64 -89.81 -0.33 -1.57 16 20 C -0.14 -1.51 7.65 -25.83 -0.20 -1.70 16 21 C -0.14 -1.31 8.09 -25.83 -0.21 -1.52 16 22 C -0.14 -1.31 7.65 -25.92 -0.20 -1.51 16 23 H 0.29 6.13 8.29 -40.82 -0.34 5.79 16 24 H 0.14 3.43 6.37 -52.48 -0.33 3.09 16 25 H 0.14 2.56 8.06 -52.49 -0.42 2.13 16 26 H 0.05 0.99 8.13 -51.93 -0.42 0.57 16 27 H 0.06 1.03 8.13 -51.93 -0.42 0.61 16 28 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 29 H 0.07 1.00 7.87 -51.93 -0.41 0.59 16 30 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.08 0.90 7.92 -51.93 -0.41 0.49 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.08 0.77 8.10 -51.92 -0.42 0.35 16 LS Contribution 317.64 15.07 4.79 4.79 Total: -1.00 -28.71 317.64 -9.54 -38.25 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -4.83 Total: 4.61 kcal Atomic # 6 Polarization: -13.87 SS G_CDS: -1.92 Total: -15.79 kcal Atomic # 7 Polarization: -18.09 SS G_CDS: 0.60 Total: -17.48 kcal Atomic # 8 Polarization: -23.89 SS G_CDS: -0.68 Total: -24.57 kcal Atomic # 14 Polarization: 18.00 SS G_CDS: -5.03 Total: 12.97 kcal Atomic # 16 Polarization: -0.30 SS G_CDS: -2.47 Total: -2.78 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -28.71 -9.54 -38.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870043689.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.453 kcal (2) G-P(sol) polarization free energy of solvation -28.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds