Wall clock time and date at job start Tue Mar 31 2020 01:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30622 * 1 3 3 Si 1.86797 * 119.99796 * 2 1 4 4 H 1.48491 * 109.47483 * 239.99932 * 3 2 1 5 5 H 1.48506 * 109.47125 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46954 * 120.00005 * 3 2 1 7 7 C 1.40332 * 120.00013 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99919 * 169.95954 * 7 2 1 9 9 C 1.40506 * 120.00221 * 349.95768 * 7 2 1 10 10 C 1.39673 * 123.36293 * 334.82667 * 9 7 2 11 11 C 1.32868 * 115.28088 * 180.29619 * 10 9 7 12 12 S 1.75655 * 110.86641 * 359.72673 * 11 10 9 13 13 C 1.39700 * 123.36447 * 154.61149 * 9 7 2 14 14 C 1.41756 * 125.45412 * 359.97438 * 13 9 7 15 15 O 1.21690 * 120.00054 * 359.72706 * 14 13 9 16 16 O 1.34996 * 119.99945 * 179.72360 * 14 13 9 17 17 C 1.42910 * 116.99958 * 180.02562 * 16 14 13 18 18 C 1.53006 * 109.46837 * 179.97438 * 17 16 14 19 19 C 1.53000 * 109.46616 * 179.97438 * 18 17 16 20 20 C 1.53777 * 113.61513 * 274.13660 * 19 18 17 21 21 C 1.53951 * 87.02101 * 220.05310 * 20 19 18 22 22 C 1.53779 * 113.61123 * 176.52693 * 19 18 17 23 23 H 0.97000 * 120.00061 * 0.02562 * 1 2 3 24 24 H 1.08007 * 122.36358 * 0.02562 * 10 9 7 25 25 H 1.07999 * 124.57164 * 179.76248 * 11 10 9 26 26 H 1.08995 * 109.46773 * 59.99829 * 17 16 14 27 27 H 1.08999 * 109.46711 * 299.99917 * 17 16 14 28 28 H 1.09000 * 109.47106 * 299.99888 * 18 17 16 29 29 H 1.08995 * 109.47030 * 60.00061 * 18 17 16 30 30 H 1.08997 * 112.85131 * 45.33660 * 19 18 17 31 31 H 1.09005 * 113.61270 * 334.56800 * 20 19 18 32 32 H 1.09000 * 113.61691 * 105.46914 * 20 19 18 33 33 H 1.09003 * 113.53697 * 270.81325 * 21 20 19 34 34 H 1.09002 * 113.67319 * 139.93300 * 21 20 19 35 35 H 1.08998 * 113.61869 * 254.52975 * 22 19 18 36 36 H 1.09007 * 113.61427 * 25.35185 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2401 1.6177 0.0000 4 1 3.0939 1.6965 -1.2124 5 1 1.2751 2.7465 0.0006 6 1 3.0939 1.6964 1.2125 7 6 2.0079 -1.2153 -0.0005 8 1 3.0756 -1.2224 -0.1636 9 6 1.3215 -2.4229 0.2111 10 6 0.1139 -2.5082 0.9077 11 6 -0.3922 -3.7317 1.0181 12 16 0.6396 -4.9098 0.2226 13 6 1.7766 -3.6577 -0.2579 14 6 2.9672 -3.8681 -0.9980 15 8 3.6846 -2.9257 -1.2773 16 8 3.3052 -5.1140 -1.3928 17 6 4.5188 -5.2526 -2.1346 18 6 4.7334 -6.7251 -2.4908 19 6 6.0324 -6.8733 -3.2855 20 6 5.8592 -6.6468 -4.7966 21 6 6.8312 -7.8228 -5.0028 22 6 6.3857 -8.3317 -3.6217 23 1 -0.4850 0.8400 -0.0004 24 1 -0.3719 -1.6413 1.3308 25 1 -1.3141 -3.9698 1.5278 26 1 5.3554 -4.8992 -1.5319 27 1 4.4550 -4.6628 -3.0490 28 1 4.7973 -7.3145 -1.5761 29 1 3.8969 -7.0788 -3.0933 30 1 6.8603 -6.3124 -2.8520 31 1 4.8495 -6.8470 -5.1553 32 1 6.2504 -5.6900 -5.1424 33 1 7.8779 -7.5210 -5.0401 34 1 6.5507 -8.4837 -5.8230 35 1 7.2013 -8.7332 -3.0204 36 1 5.5203 -8.9937 -3.6571 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870043689.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:17:07 Heat of formation + Delta-G solvation = -77.224760 kcal Electronic energy + Delta-G solvation = -18949.204222 eV Core-core repulsion = 15910.126799 eV Total energy + Delta-G solvation = -3039.077423 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.092 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.05778 -39.78433 -38.61576 -36.90980 -35.10942 -32.83631 -31.01028 -28.80128 -26.62002 -26.14334 -24.43495 -22.74213 -22.28933 -20.70213 -20.31362 -19.35289 -18.26381 -17.40645 -17.33481 -16.83972 -16.45680 -15.74917 -15.48631 -15.29931 -15.01767 -14.27988 -14.04097 -13.84060 -13.55892 -13.31691 -13.26426 -13.18018 -12.97905 -12.83050 -12.34468 -12.23210 -12.16059 -12.05684 -11.52937 -11.46538 -11.35074 -11.20434 -11.08074 -11.00939 -10.75460 -9.45874 -9.11506 -8.99020 -6.64074 0.04645 1.31562 1.33886 1.35799 1.45388 1.73917 1.87926 2.12578 2.24390 2.31027 3.19149 3.63116 3.71343 3.84184 3.96238 4.09013 4.27002 4.36943 4.39020 4.53467 4.69629 4.84963 4.87212 4.88708 4.94463 5.01588 5.10094 5.11490 5.13009 5.18975 5.33321 5.39058 5.56457 5.61771 5.68674 5.85622 6.28281 6.45812 6.61631 7.40925 7.93270 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.020436 B = 0.004252 C = 0.003607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.801162 B = 6583.273517 C = 7760.450130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.775 5.775 2 C 0.034 3.966 3 Si 0.995 3.005 4 H -0.269 1.269 5 H -0.246 1.246 6 H -0.253 1.253 7 C -0.395 4.395 8 H 0.089 0.911 9 C 0.117 3.883 10 C -0.135 4.135 11 C -0.178 4.178 12 S 0.017 5.983 13 C -0.459 4.459 14 C 0.523 3.477 15 O -0.583 6.583 16 O -0.373 6.373 17 C 0.069 3.931 18 C -0.095 4.095 19 C -0.113 4.113 20 C -0.147 4.147 21 C -0.134 4.134 22 C -0.128 4.128 23 H 0.308 0.692 24 H 0.147 0.853 25 H 0.184 0.816 26 H 0.049 0.951 27 H 0.047 0.953 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.090 0.910 31 H 0.079 0.921 32 H 0.062 0.938 33 H 0.087 0.913 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.133 -7.832 -3.569 10.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.189 4.189 3 Si 0.813 3.187 4 H -0.193 1.193 5 H -0.169 1.169 6 H -0.177 1.177 7 C -0.424 4.424 8 H 0.107 0.893 9 C 0.106 3.894 10 C -0.167 4.167 11 C -0.312 4.312 12 S 0.273 5.727 13 C -0.575 4.575 14 C 0.382 3.618 15 O -0.483 6.483 16 O -0.292 6.292 17 C -0.006 4.006 18 C -0.132 4.132 19 C -0.132 4.132 20 C -0.184 4.184 21 C -0.171 4.171 22 C -0.165 4.165 23 H 0.120 0.880 24 H 0.164 0.836 25 H 0.201 0.799 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.093 0.907 29 H 0.091 0.909 30 H 0.109 0.891 31 H 0.098 0.902 32 H 0.080 0.920 33 H 0.105 0.895 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 5.041 -9.044 -3.869 11.053 hybrid contribution 0.380 2.339 0.081 2.371 sum 5.421 -6.705 -3.788 9.418 Atomic orbital electron populations 1.69619 1.08942 1.32804 1.28439 1.27179 0.95905 1.05077 0.90692 0.85049 0.78991 0.74307 0.80316 1.19343 1.16877 1.17698 1.20261 0.97262 0.90796 1.34129 0.89345 1.17360 0.91552 0.91914 0.88568 1.20545 0.96698 0.97770 1.01708 1.25738 1.04208 0.96121 1.05155 1.82914 1.17966 1.11319 1.60452 1.21460 1.07237 0.98177 1.30619 1.18461 0.85215 0.80052 0.78116 1.90660 1.54640 1.43080 1.59893 1.86153 1.42749 1.31991 1.68263 1.22613 0.84359 0.99336 0.94277 1.21521 0.98593 0.91956 1.01141 1.22539 0.96205 0.99150 0.95260 1.23098 1.00498 0.99380 0.95463 1.22814 0.99425 0.97309 0.97552 1.22915 1.01742 0.94707 0.97176 0.88020 0.83613 0.79902 0.93291 0.93500 0.90668 0.90879 0.89148 0.90228 0.91966 0.89489 0.90439 0.90477 0.89566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -36.04 10.86 21.89 0.24 -35.80 16 2 C 0.03 1.61 5.37 85.38 0.46 2.07 16 3 Si 0.99 36.52 29.57 68.60 2.03 38.55 16 4 H -0.27 -10.33 7.11 99.48 0.71 -9.62 16 5 H -0.25 -7.86 7.11 99.48 0.71 -7.15 16 6 H -0.25 -9.06 7.11 99.48 0.71 -8.35 16 7 C -0.39 -21.80 8.40 23.33 0.20 -21.60 16 8 H 0.09 5.20 6.07 -2.91 -0.02 5.18 16 9 C 0.12 6.45 5.53 -22.03 -0.12 6.33 16 10 C -0.14 -6.54 8.81 21.44 0.19 -6.35 16 11 C -0.18 -7.49 11.11 66.64 0.74 -6.75 16 12 S 0.02 0.78 23.02 -56.49 -1.30 -0.52 16 13 C -0.46 -25.09 6.36 23.49 0.15 -24.94 16 14 C 0.52 28.76 7.73 68.69 0.53 29.29 16 15 O -0.58 -34.39 14.11 19.21 0.27 -34.12 16 16 O -0.37 -17.60 9.87 -59.14 -0.58 -18.18 16 17 C 0.07 2.62 5.37 71.98 0.39 3.01 16 18 C -0.09 -2.65 5.41 30.60 0.17 -2.49 16 19 C -0.11 -2.51 3.64 -10.27 -0.04 -2.55 16 20 C -0.15 -3.05 7.65 31.18 0.24 -2.81 16 21 C -0.13 -2.16 8.09 31.18 0.25 -1.91 16 22 C -0.13 -2.21 7.65 31.12 0.24 -1.97 16 23 H 0.31 12.40 8.29 -92.71 -0.77 11.63 16 24 H 0.15 6.89 6.37 -2.91 -0.02 6.87 16 25 H 0.18 6.00 8.06 -2.91 -0.02 5.97 16 26 H 0.05 1.88 8.13 -2.39 -0.02 1.86 16 27 H 0.05 1.84 8.13 -2.39 -0.02 1.82 16 28 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.07 2.01 7.87 -2.39 -0.02 2.00 16 30 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.08 1.69 7.92 -2.38 -0.02 1.67 16 32 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.09 1.43 8.10 -2.38 -0.02 1.41 16 Total: -1.00 -63.79 317.64 5.12 -58.67 By element: Atomic # 1 Polarization: 21.00 SS G_CDS: 1.08 Total: 22.08 kcal Atomic # 6 Polarization: -34.06 SS G_CDS: 3.39 Total: -30.67 kcal Atomic # 7 Polarization: -36.04 SS G_CDS: 0.24 Total: -35.80 kcal Atomic # 8 Polarization: -51.99 SS G_CDS: -0.31 Total: -52.31 kcal Atomic # 14 Polarization: 36.52 SS G_CDS: 2.03 Total: 38.55 kcal Atomic # 16 Polarization: 0.78 SS G_CDS: -1.30 Total: -0.52 kcal Total: -63.79 5.12 -58.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870043689.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.557 kcal (2) G-P(sol) polarization free energy of solvation -63.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds