Wall clock time and date at job start Tue Mar 31 2020 01:17:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30620 * 1 3 3 Si 1.86804 * 119.99870 * 2 1 4 4 H 1.48505 * 109.47113 * 83.17278 * 3 2 1 5 5 H 1.48494 * 109.47236 * 203.17304 * 3 2 1 6 6 H 1.48496 * 109.47166 * 323.17557 * 3 2 1 7 7 C 1.40338 * 120.00507 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99520 * 17.55376 * 7 2 1 9 9 C 1.40499 * 120.00283 * 197.54854 * 7 2 1 10 10 C 1.39673 * 123.36532 * 24.92065 * 9 7 2 11 11 C 1.32866 * 115.28173 * 179.76112 * 10 9 7 12 12 S 1.75652 * 110.86477 * 0.49123 * 11 10 9 13 13 C 1.39699 * 123.36168 * 205.21645 * 9 7 2 14 14 C 1.41752 * 125.45495 * 359.97438 * 13 9 7 15 15 O 1.21686 * 120.00448 * 0.02562 * 14 13 9 16 16 O 1.35007 * 119.99985 * 180.02562 * 14 13 9 17 17 C 1.42900 * 117.00049 * 179.97438 * 16 14 13 18 18 C 1.53000 * 109.47320 * 179.97438 * 17 16 14 19 19 C 1.52994 * 109.47488 * 180.02562 * 18 17 16 20 20 C 1.53000 * 109.47488 * 179.97438 * 19 18 17 21 21 C 1.52991 * 117.50115 * 243.74645 * 20 19 18 22 22 C 1.52994 * 117.49944 * 175.08544 * 20 19 18 23 23 H 0.97000 * 119.99917 * 173.08296 * 1 2 3 24 24 H 1.08001 * 122.35651 * 359.97438 * 10 9 7 25 25 H 1.07999 * 124.57231 * 180.21341 * 11 10 9 26 26 H 1.08994 * 109.47213 * 300.00006 * 17 16 14 27 27 H 1.09005 * 109.47023 * 59.99610 * 17 16 14 28 28 H 1.09003 * 109.47142 * 300.00104 * 18 17 16 29 29 H 1.09005 * 109.47109 * 60.00008 * 18 17 16 30 30 H 1.09003 * 109.46849 * 300.00081 * 19 18 17 31 31 H 1.08997 * 109.47289 * 59.99472 * 19 18 17 32 32 H 1.09001 * 115.54327 * 29.41473 * 20 19 18 33 33 H 1.09000 * 117.49619 * 359.97438 * 21 20 19 34 34 H 1.09001 * 117.50472 * 145.01762 * 21 20 19 35 35 H 1.09005 * 117.49632 * 214.98216 * 22 20 19 36 36 H 1.09001 * 117.50012 * 359.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2402 1.6178 0.0000 4 1 2.3435 2.1297 1.3902 5 1 3.6023 1.4030 -0.5509 6 1 1.5171 2.6068 -0.8391 7 6 2.0080 -1.2153 0.0005 8 1 1.5057 -2.1290 -0.2812 9 6 3.3640 -1.2434 0.3674 10 6 3.9556 -0.2870 1.1957 11 6 5.2480 -0.4717 1.4427 12 16 5.8449 -1.9016 0.6154 13 6 4.2565 -2.2274 -0.0647 14 6 3.9332 -3.3147 -0.9147 15 8 2.7969 -3.4456 -1.3299 16 8 4.8861 -4.2052 -1.2638 17 6 4.4897 -5.2763 -2.1226 18 6 5.6948 -6.1751 -2.4065 19 6 5.2707 -7.3216 -3.3265 20 6 6.4760 -8.2200 -3.6109 21 6 6.9648 -8.3093 -5.0579 22 6 6.2318 -9.4935 -4.4229 23 1 -0.4850 -0.8339 -0.1012 24 1 3.4008 0.5422 1.6092 25 1 5.8514 0.1731 2.0644 26 1 3.7069 -5.8598 -1.6381 27 1 4.1116 -4.8691 -3.0604 28 1 6.4774 -5.5913 -2.8912 29 1 6.0733 -6.5823 -1.4688 30 1 4.4880 -7.9055 -2.8422 31 1 4.8924 -6.9141 -4.2641 32 1 7.2273 -8.2622 -2.8223 33 1 6.4275 -7.7282 -5.8073 34 1 8.0377 -8.4105 -5.2214 35 1 6.8228 -10.3735 -4.1688 36 1 5.2124 -9.6915 -4.7542 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870044069.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:17:10 Heat of formation + Delta-G solvation = -61.734718 kcal Electronic energy + Delta-G solvation = -18738.729600 eV Core-core repulsion = 15700.323876 eV Total energy + Delta-G solvation = -3038.405724 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.092 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.24724 -37.88745 -37.04345 -35.21393 -33.55476 -32.90536 -29.36282 -27.49992 -26.07778 -22.60993 -22.41262 -21.60820 -20.94880 -20.46938 -19.26513 -17.77124 -16.81505 -16.05710 -15.71177 -15.42607 -14.96495 -14.60390 -14.23563 -13.88371 -13.54782 -13.34640 -12.61216 -12.34409 -12.19475 -11.93053 -11.81575 -11.68892 -11.47083 -11.35496 -11.03058 -10.94732 -10.79021 -10.37473 -10.21261 -10.04388 -10.00894 -9.67595 -9.64851 -9.40376 -8.85213 -7.92362 -7.66267 -7.39764 -4.79565 1.67525 2.84238 2.91215 3.13094 3.28312 3.43898 3.47861 3.59671 3.73544 3.82768 4.17207 4.57744 4.75620 4.77670 4.97978 5.05746 5.18791 5.38467 5.44471 5.58917 5.72071 5.73918 5.76492 5.78428 5.84978 5.92384 6.08450 6.15982 6.28436 6.32195 6.75103 6.78519 7.13680 7.16094 7.30249 7.67555 7.93348 8.27571 8.45147 9.28627 9.58039 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.027120 B = 0.003749 C = 0.003414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.210047 B = 7467.632008 C = 8200.388886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.033 3.967 3 Si 1.066 2.934 4 H -0.270 1.270 5 H -0.254 1.254 6 H -0.280 1.280 7 C -0.410 4.410 8 H 0.111 0.889 9 C 0.111 3.889 10 C -0.168 4.168 11 C -0.174 4.174 12 S 0.017 5.983 13 C -0.415 4.415 14 C 0.532 3.468 15 O -0.549 6.549 16 O -0.371 6.371 17 C 0.073 3.927 18 C -0.113 4.113 19 C -0.087 4.087 20 C -0.149 4.149 21 C -0.182 4.182 22 C -0.184 4.184 23 H 0.297 0.703 24 H 0.125 0.875 25 H 0.148 0.852 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.105 0.895 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.555 -7.467 -3.559 12.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.390 5.390 2 C -0.192 4.192 3 Si 0.890 3.110 4 H -0.196 1.196 5 H -0.178 1.178 6 H -0.206 1.206 7 C -0.440 4.440 8 H 0.129 0.871 9 C 0.101 3.899 10 C -0.202 4.202 11 C -0.309 4.309 12 S 0.275 5.725 13 C -0.531 4.531 14 C 0.388 3.612 15 O -0.445 6.445 16 O -0.290 6.290 17 C -0.002 4.002 18 C -0.151 4.151 19 C -0.124 4.124 20 C -0.167 4.167 21 C -0.219 4.219 22 C -0.221 4.221 23 H 0.110 0.890 24 H 0.143 0.857 25 H 0.166 0.834 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.123 0.877 33 H 0.112 0.888 34 H 0.110 0.890 35 H 0.110 0.890 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 10.335 -6.683 -3.717 12.857 hybrid contribution -1.426 -1.177 0.019 1.849 sum 8.909 -7.860 -3.698 12.443 Atomic orbital electron populations 1.70397 1.08218 1.34486 1.25939 1.27798 0.95764 1.05092 0.90585 0.83756 0.76506 0.72462 0.78263 1.19643 1.17816 1.20627 1.21224 0.93955 0.97777 1.31073 0.87119 1.16889 0.93075 0.89606 0.90344 1.20281 0.95081 1.01774 1.03016 1.25269 0.98637 1.02183 1.04814 1.83288 1.13756 1.24025 1.51446 1.20863 0.95715 1.11270 1.25237 1.18202 0.82392 0.80916 0.79700 1.90727 1.21544 1.75390 1.56873 1.86164 1.42766 1.36883 1.63175 1.22283 0.96782 0.87529 0.93650 1.21504 0.97788 0.95707 1.00081 1.21084 0.96156 0.95375 0.99799 1.22323 1.00569 0.99066 0.94741 1.23052 1.00442 1.02290 0.96111 1.22976 1.01752 0.92392 1.04987 0.89032 0.85730 0.83413 0.92696 0.92656 0.91000 0.91088 0.91320 0.91572 0.87662 0.88771 0.88988 0.88983 0.88845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -19.46 13.64 55.57 0.76 -18.70 16 2 C 0.03 0.82 5.48 -17.28 -0.09 0.73 16 3 Si 1.07 22.04 24.91 -169.99 -4.23 17.80 16 4 H -0.27 -5.08 6.81 56.52 0.38 -4.69 16 5 H -0.25 -5.25 6.57 56.52 0.37 -4.88 16 6 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 7 C -0.41 -11.09 8.79 -37.94 -0.33 -11.43 16 8 H 0.11 3.29 6.24 -52.48 -0.33 2.96 16 9 C 0.11 2.87 5.16 -107.96 -0.56 2.31 16 10 C -0.17 -3.75 7.24 -40.90 -0.30 -4.05 16 11 C -0.17 -3.45 11.11 28.88 0.32 -3.13 16 12 S 0.02 0.36 23.02 -107.50 -2.47 -2.12 16 13 C -0.41 -10.64 6.36 -37.69 -0.24 -10.88 16 14 C 0.53 13.78 7.73 32.07 0.25 14.03 16 15 O -0.55 -15.42 14.10 -19.41 -0.27 -15.70 16 16 O -0.37 -8.28 9.87 -41.34 -0.41 -8.68 16 17 C 0.07 1.31 5.38 37.16 0.20 1.51 16 18 C -0.11 -1.55 5.54 -26.73 -0.15 -1.70 16 19 C -0.09 -0.97 5.50 -26.73 -0.15 -1.12 16 20 C -0.15 -1.47 5.73 -90.63 -0.52 -1.99 16 21 C -0.18 -1.63 10.18 -26.70 -0.27 -1.90 16 22 C -0.18 -1.60 10.25 -26.70 -0.27 -1.87 16 23 H 0.30 7.40 8.73 -40.82 -0.36 7.05 16 24 H 0.13 2.57 4.51 -52.49 -0.24 2.33 16 25 H 0.15 2.31 8.06 -52.49 -0.42 1.89 16 26 H 0.05 1.00 8.13 -51.93 -0.42 0.57 16 27 H 0.06 1.01 8.13 -51.93 -0.42 0.59 16 28 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 29 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.07 0.73 7.87 -51.93 -0.41 0.32 16 32 H 0.11 1.01 8.08 -51.93 -0.42 0.59 16 33 H 0.09 0.83 8.03 -51.93 -0.42 0.42 16 34 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 317.10 15.07 4.78 4.78 Total: -1.00 -29.00 317.10 -8.78 -37.78 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -4.81 Total: 4.32 kcal Atomic # 6 Polarization: -17.38 SS G_CDS: -2.11 Total: -19.49 kcal Atomic # 7 Polarization: -19.46 SS G_CDS: 0.76 Total: -18.70 kcal Atomic # 8 Polarization: -23.70 SS G_CDS: -0.68 Total: -24.38 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.23 Total: 17.80 kcal Atomic # 16 Polarization: 0.36 SS G_CDS: -2.47 Total: -2.12 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -29.00 -8.78 -37.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870044069.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.951 kcal (2) G-P(sol) polarization free energy of solvation -29.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds